Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12750

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,835,753	+				-0.6
2,835,918	-		HER17_RS12745	0.34	+0.8
2,836,372	-				+0.3
2,836,401	-				+0.7
2,836,472	-				+0.2
2,836,474	-				+0.6
2,836,474	-				+0.5
2,836,475	+				-1.1
2,836,475	+				-0.2
2,836,540	+				+0.6
2,836,540	+				+0.4
2,836,553	-				-0.4
2,836,700	-				+0.2
2,836,703	-				-0.8
2,836,753	+				+0.2
2,836,804	+				+0.2
2,836,822	-				-0.3
2,836,831	+				-0.8
2,836,985	+		HER17_RS12750	0.14	+0.0
2,836,985	+		HER17_RS12750	0.14	+0.4
2,836,985	+		HER17_RS12750	0.14	-3.2
2,836,985	+		HER17_RS12750	0.14	+0.7
2,837,000	+		HER17_RS12750	0.15	+0.1
2,837,152	+		HER17_RS12750	0.23	+2.9
2,837,432	+		HER17_RS12750	0.39	-0.0
2,837,510	-		HER17_RS12750	0.44	+0.5
2,837,512	-		HER17_RS12750	0.44	+0.9
2,837,546	-		HER17_RS12750	0.46	+0.3
2,837,546	-		HER17_RS12750	0.46	-0.6
2,837,561	-		HER17_RS12750	0.46	-0.6
2,837,683	+		HER17_RS12750	0.53	+0.4
2,837,701	-		HER17_RS12750	0.54	+0.3
2,837,707	+		HER17_RS12750	0.55	-1.2
2,837,780	-		HER17_RS12750	0.59	+0.8
2,837,823	+		HER17_RS12750	0.61	-0.6
2,837,847	-		HER17_RS12750	0.63	-0.9
2,837,852	-		HER17_RS12750	0.63	-1.1
2,837,853	+		HER17_RS12750	0.63	-0.8
2,837,854	-		HER17_RS12750	0.63	+0.6
2,837,854	-		HER17_RS12750	0.63	+1.0
2,837,854	-		HER17_RS12750	0.63	+0.9
2,837,857	+		HER17_RS12750	0.63	-0.8
2,837,858	-		HER17_RS12750	0.63	+0.6
2,837,858	-		HER17_RS12750	0.63	+2.0
2,837,934	+		HER17_RS12750	0.68	+0.3
2,837,972	-		HER17_RS12750	0.70	+0.7
2,837,990	+		HER17_RS12750	0.71	+0.2
2,837,991	-		HER17_RS12750	0.71	+0.5
2,838,007	+		HER17_RS12750	0.72	+1.5
2,838,008	-		HER17_RS12750	0.72	+1.0
2,838,008	-		HER17_RS12750	0.72	-0.9
2,838,029	+		HER17_RS12750	0.73	-0.3
2,838,062	-		HER17_RS12750	0.75	+0.2
2,838,062	-		HER17_RS12750	0.75	-0.5
2,838,124	+		HER17_RS12750	0.79	-1.4
2,838,139	+		HER17_RS12750	0.79	+0.5
2,838,139	+		HER17_RS12750	0.79	+0.2
2,838,139	+		HER17_RS12750	0.79	+0.8
2,838,140	-		HER17_RS12750	0.79	-0.0
2,838,140	-		HER17_RS12750	0.79	+0.7
2,838,141	+		HER17_RS12750	0.80	+0.5
2,838,141	+		HER17_RS12750	0.80	-0.2
2,838,141	+		HER17_RS12750	0.80	-0.7
2,838,142	-		HER17_RS12750	0.80	+0.1
2,838,143	+		HER17_RS12750	0.80	+0.3
2,838,144	-		HER17_RS12750	0.80	-0.3
2,838,179	+		HER17_RS12750	0.82	-0.4
2,838,180	-		HER17_RS12750	0.82	+0.0
2,838,185	+		HER17_RS12750	0.82	+0.5
2,838,194	+		HER17_RS12750	0.83	-2.4
2,838,194	+		HER17_RS12750	0.83	+1.0
2,838,194	+		HER17_RS12750	0.83	-2.2
2,838,195	-		HER17_RS12750	0.83	-0.5
2,838,217	+		HER17_RS12750	0.84	+0.0
2,838,242	+		HER17_RS12750	0.85	+0.5
2,838,242	+		HER17_RS12750	0.85	-0.7
2,838,256	-		HER17_RS12750	0.86	-1.0
2,838,256	-		HER17_RS12750	0.86	-0.1
2,838,256	-		HER17_RS12750	0.86	+0.2
2,838,256	-		HER17_RS12750	0.86	-0.3
2,838,257	+		HER17_RS12750	0.86	-0.0
2,838,275	+		HER17_RS12750	0.87	+0.1
2,838,276	-		HER17_RS12750	0.87	-0.5
2,838,279	-		HER17_RS12750	0.87	+0.6
2,838,279	-		HER17_RS12750	0.87	+0.7
2,838,302	-		HER17_RS12750	0.89	+0.2
2,838,389	+				+0.1
2,838,390	-				-1.3
2,838,393	-				+0.5
2,838,480	+				+0.7
2,838,480	+				+0.7
2,838,480	+				-0.5
2,838,481	-				-0.2
2,838,481	-				+0.6
2,838,481	-				-0.4
2,838,486	+				+0.6
2,838,487	-				+1.2
2,838,487	-				-0.2
2,838,499	+				-0.2
2,838,499	+				+1.1
2,838,499	+				+0.7
2,838,500	-				-1.1
2,838,500	-				-0.4
2,838,500	-				-0.4
2,838,500	-				-0.3
2,838,503	+				-0.3
2,838,503	+				+0.6
2,838,503	+				+1.6
2,838,503	+				-0.0
2,838,503	+				-0.2
2,838,503	+				-1.8
2,838,503	+				-0.3
2,838,503	+				+0.6
2,838,504	-				-0.4
2,838,504	-				-0.4
2,838,504	-				-0.1
2,838,504	-				+2.5
2,838,504	-				+0.2
2,838,504	-				-0.0
2,838,504	-				+1.2
2,838,504	-				-0.4
2,838,504	-				+1.5
2,838,504	-				+0.8
2,838,505	+				+0.7
2,838,528	+				+0.1
2,838,528	+				-0.8
2,838,528	+				-0.6
2,838,528	+				+0.3
2,838,528	+				+0.2
2,838,529	-				+0.5
2,838,529	-				+0.9
2,838,529	-				+1.2
2,838,529	-				-0.0
2,838,529	-				+0.0
2,838,531	-				+1.5
2,838,533	+				+0.0
2,838,561	+				-1.1
2,838,562	-				-0.8
2,838,567	+				-0.6
2,838,568	-				-2.2
2,838,703	-		HER17_RS12755	0.12	+2.3
2,838,840	-		HER17_RS12755	0.23	+0.8
2,838,869	+		HER17_RS12755	0.25	+0.1
2,838,869	+		HER17_RS12755	0.25	-0.3
2,838,869	+		HER17_RS12755	0.25	-0.2
2,838,869	+		HER17_RS12755	0.25	+1.2
2,838,869	+		HER17_RS12755	0.25	+0.8
2,838,870	-		HER17_RS12755	0.25	+0.6
2,838,870	-		HER17_RS12755	0.25	-0.0
2,838,870	-		HER17_RS12755	0.25	-0.1
2,838,870	-		HER17_RS12755	0.25	-0.8
2,838,945	-		HER17_RS12755	0.31	+0.6
2,838,985	+		HER17_RS12755	0.34	+1.2
2,839,025	-		HER17_RS12755	0.37	+0.7
2,839,047	+		HER17_RS12755	0.39	-0.1
2,839,047	+		HER17_RS12755	0.39	-0.5
2,839,048	-		HER17_RS12755	0.39	-1.4
2,839,119	-		HER17_RS12755	0.44	+0.4
2,839,200	+		HER17_RS12755	0.50	+0.6
2,839,200	+		HER17_RS12755	0.50	+0.5
2,839,233	-		HER17_RS12755	0.53	+0.8
2,839,238	+		HER17_RS12755	0.53	+0.2
2,839,417	-		HER17_RS12755	0.67	+0.6
2,839,429	+		HER17_RS12755	0.68	+0.0
2,839,435	+		HER17_RS12755	0.68	-0.3