Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11570

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,569,115	+				-0.2
2,569,115	+				+1.6
2,569,116	-				-3.0
2,569,116	-				-0.1
2,569,154	+				-0.1
2,569,206	+				-1.1
2,569,214	-				-0.4
2,569,260	+				+0.1
2,569,278	+				+0.3
2,569,279	-				+1.0
2,569,375	+				+1.0
2,569,430	+		HER17_RS11565	0.11	-0.1
2,569,431	-		HER17_RS11565	0.11	+0.9
2,569,431	-		HER17_RS11565	0.11	-0.1
2,569,431	-		HER17_RS11565	0.11	+0.4
2,569,434	+		HER17_RS11565	0.12	-1.0
2,569,434	+		HER17_RS11565	0.12	+0.6
2,569,435	-		HER17_RS11565	0.12	+1.2
2,569,435	-		HER17_RS11565	0.12	+0.4
2,569,435	-		HER17_RS11565	0.12	+0.5
2,569,484	+		HER17_RS11565	0.19	-0.4
2,569,509	-		HER17_RS11565	0.22	+0.0
2,569,509	-		HER17_RS11565	0.22	-0.8
2,569,509	-		HER17_RS11565	0.22	+0.4
2,569,542	+		HER17_RS11565	0.26	-0.6
2,569,578	-		HER17_RS11565	0.31	+0.2
2,569,578	-		HER17_RS11565	0.31	+0.2
2,569,610	+		HER17_RS11565	0.35	+0.4
2,569,611	-		HER17_RS11565	0.35	+0.8
2,569,613	+		HER17_RS11565	0.36	+0.5
2,569,613	+		HER17_RS11565	0.36	+0.6
2,569,614	-		HER17_RS11565	0.36	+0.4
2,569,614	-		HER17_RS11565	0.36	+0.4
2,569,617	+		HER17_RS11565	0.36	+0.4
2,569,618	-		HER17_RS11565	0.36	+0.2
2,569,639	-		HER17_RS11565	0.39	+0.8
2,569,662	+		HER17_RS11565	0.42	+1.0
2,569,662	+		HER17_RS11565	0.42	+0.5
2,569,663	-		HER17_RS11565	0.42	+0.2
2,569,787	+		HER17_RS11565	0.59	+0.9
2,569,794	+		HER17_RS11565	0.60	+1.0
2,569,803	-		HER17_RS11565	0.61	+0.6
2,569,847	+		HER17_RS11565	0.67	-0.6
2,569,847	+		HER17_RS11565	0.67	+1.6
2,569,848	-		HER17_RS11565	0.67	-0.7
2,569,868	+		HER17_RS11565	0.70	-0.0
2,569,875	+		HER17_RS11565	0.71	+0.0
2,569,876	-		HER17_RS11565	0.71	+0.2
2,569,894	-		HER17_RS11565	0.73	-0.6
2,569,962	+		HER17_RS11565	0.82	+0.2
2,569,962	+		HER17_RS11565	0.82	+0.0
2,569,963	-		HER17_RS11565	0.82	-0.6
2,570,016	+		HER17_RS11565	0.89	+1.8
2,570,016	+		HER17_RS11565	0.89	+0.3
2,570,019	+		HER17_RS11565	0.90	-0.4
2,570,020	-				+0.2
2,570,020	-				+0.0
2,570,042	+				-0.2
2,570,042	+				-1.0
2,570,042	+				-0.6
2,570,082	+				-0.1
2,570,083	-				-0.2
2,570,174	+				+0.2
2,570,191	+				-0.2
2,570,197	+				+0.4
2,570,197	+				+0.0
2,570,228	+				-0.2
2,570,228	+				-0.9
2,570,246	-				+0.2
2,570,289	-		HER17_RS11570	0.11	-0.1
2,570,289	-		HER17_RS11570	0.11	-0.6
2,570,289	-		HER17_RS11570	0.11	-1.0
2,570,432	+		HER17_RS11570	0.20	-0.0
2,570,432	+		HER17_RS11570	0.20	+0.3
2,570,469	+		HER17_RS11570	0.22	-0.0
2,570,470	-		HER17_RS11570	0.22	-1.1
2,570,488	+		HER17_RS11570	0.23	+1.5
2,570,493	+		HER17_RS11570	0.23	+0.3
2,570,494	-		HER17_RS11570	0.23	+0.0
2,570,512	+		HER17_RS11570	0.24	+0.2
2,570,512	+		HER17_RS11570	0.24	+0.4
2,570,513	-		HER17_RS11570	0.24	+2.5
2,570,513	-		HER17_RS11570	0.24	-0.1
2,570,524	-		HER17_RS11570	0.25	+0.9
2,570,524	-		HER17_RS11570	0.25	+1.8
2,570,524	-		HER17_RS11570	0.25	-0.3
2,570,558	+		HER17_RS11570	0.27	-1.2
2,570,560	+		HER17_RS11570	0.27	-0.7
2,570,561	-		HER17_RS11570	0.27	+0.4
2,570,561	-		HER17_RS11570	0.27	+0.3
2,570,589	+		HER17_RS11570	0.29	-0.6
2,570,592	-		HER17_RS11570	0.29	-0.0
2,570,625	-		HER17_RS11570	0.31	+0.2
2,570,625	-		HER17_RS11570	0.31	-2.2
2,570,626	+		HER17_RS11570	0.31	-0.1
2,570,626	+		HER17_RS11570	0.31	+0.2
2,570,682	-		HER17_RS11570	0.34	-0.5
2,570,687	+		HER17_RS11570	0.34	+0.9
2,570,687	+		HER17_RS11570	0.34	-1.8
2,570,687	+		HER17_RS11570	0.34	+0.5
2,570,687	+		HER17_RS11570	0.34	-0.4
2,570,687	+		HER17_RS11570	0.34	+0.4
2,570,688	-		HER17_RS11570	0.34	+0.0
2,570,738	+		HER17_RS11570	0.37	+0.4
2,570,765	+		HER17_RS11570	0.39	+1.0
2,570,766	-		HER17_RS11570	0.39	+0.4
2,570,857	+		HER17_RS11570	0.44	+2.0
2,570,857	+		HER17_RS11570	0.44	-0.1
2,570,858	-		HER17_RS11570	0.44	-0.2
2,570,861	+		HER17_RS11570	0.44	+0.9
2,570,862	-		HER17_RS11570	0.44	-2.2
2,570,862	-		HER17_RS11570	0.44	+0.0
2,570,868	-		HER17_RS11570	0.45	-2.3
2,570,884	+		HER17_RS11570	0.45	-0.4
2,571,047	+		HER17_RS11570	0.55	+0.0
2,571,048	-		HER17_RS11570	0.55	+1.3
2,571,050	-		HER17_RS11570	0.55	-1.2
2,571,170	+		HER17_RS11570	0.62	+1.2
2,571,170	+		HER17_RS11570	0.62	-2.0
2,571,171	-		HER17_RS11570	0.62	-0.2
2,571,287	+		HER17_RS11570	0.68	+0.4
2,571,288	-		HER17_RS11570	0.69	+0.0
2,571,343	-		HER17_RS11570	0.72	+0.3
2,571,367	-		HER17_RS11570	0.73	-0.8
2,571,367	-		HER17_RS11570	0.73	+0.4
2,571,367	-		HER17_RS11570	0.73	+0.5
2,571,458	-		HER17_RS11570	0.78	+0.5
2,571,488	+		HER17_RS11570	0.80	-1.0
2,571,590	+		HER17_RS11570	0.86	+0.3
2,571,644	+		HER17_RS11570	0.89	+0.6
2,571,655	+		HER17_RS11570	0.90	-0.8
2,571,659	+		HER17_RS11570	0.90	+0.1
2,571,659	+		HER17_RS11570	0.90	+0.8
2,571,660	-		HER17_RS11570	0.90	-0.5
2,571,736	-				+0.8
2,571,736	-				+0.0
2,571,736	-				-0.3
2,571,931	+				+0.8
2,571,931	+				-0.8
2,571,932	-				-1.2
2,571,974	+				-0.2
2,571,975	-				-0.1
2,571,975	-				-0.2
2,572,000	+				-0.8
2,572,001	-				-0.0
2,572,008	+				+0.0
2,572,009	-				+0.3
2,572,009	-				-0.2
2,572,017	-				+1.1
2,572,029	+				+1.0
2,572,122	+				+0.6
2,572,174	+				+0.0
2,572,174	+				-1.7
2,572,265	-		HER17_RS11575	0.12	-1.8
2,572,272	-		HER17_RS11575	0.13	+0.5
2,572,272	-		HER17_RS11575	0.13	-0.4
2,572,343	+		HER17_RS11575	0.16	+0.2
2,572,343	+		HER17_RS11575	0.16	+0.7
2,572,344	-		HER17_RS11575	0.16	+0.5
2,572,344	-		HER17_RS11575	0.16	+1.3
2,572,344	-		HER17_RS11575	0.16	+0.0
2,572,344	-		HER17_RS11575	0.16	+0.3
2,572,348	-		HER17_RS11575	0.16	+0.7
2,572,361	+		HER17_RS11575	0.17	+0.6
2,572,361	+		HER17_RS11575	0.17	+0.0
2,572,362	-		HER17_RS11575	0.17	+0.9
2,572,362	-		HER17_RS11575	0.17	+0.2
2,572,386	-		HER17_RS11575	0.18	+0.5
2,572,449	-		HER17_RS11575	0.21	-0.4
2,572,449	-		HER17_RS11575	0.21	+1.2
2,572,466	+		HER17_RS11575	0.22	+0.5
2,572,467	-		HER17_RS11575	0.22	-0.6
2,572,631	+		HER17_RS11575	0.29	+0.6
2,572,631	+		HER17_RS11575	0.29	-0.5
2,572,632	-		HER17_RS11575	0.29	+0.0
2,572,717	+		HER17_RS11575	0.33	+0.9
2,572,718	-		HER17_RS11575	0.33	-0.2
2,572,718	-		HER17_RS11575	0.33	+1.5
2,572,718	-		HER17_RS11575	0.33	-0.4
2,572,745	-		HER17_RS11575	0.34	+1.0