Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07020

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,554,984	-		HER17_RS07010	0.81	-0.4
1,554,984	-		HER17_RS07010	0.81	+0.6
1,554,984	-		HER17_RS07010	0.81	+0.1
1,555,028	+		HER17_RS07010	0.86	+1.5
1,555,029	-		HER17_RS07010	0.86	+0.8
1,555,029	-		HER17_RS07010	0.86	-0.5
1,555,151	+				+0.0
1,555,152	-				-1.5
1,555,152	-				-0.1
1,555,181	+				-0.8
1,555,181	+				+0.6
1,555,181	+				-0.2
1,555,185	+				+0.2
1,555,185	+				+1.3
1,555,226	+				-0.8
1,555,226	+				-0.8
1,555,226	+				-0.3
1,555,247	+				+0.4
1,555,247	+				-0.9
1,555,247	+				+0.9
1,555,247	+				+0.4
1,555,248	-				-0.0
1,555,283	+				-1.0
1,555,283	+				-0.4
1,555,284	-				-0.5
1,555,286	+				-1.2
1,555,287	-				-0.9
1,555,287	-				-0.1
1,555,326	+				-1.6
1,555,326	+				-0.1
1,555,326	+				-0.5
1,555,327	-				+0.3
1,555,327	-				+0.0
1,555,380	+				-0.2
1,555,380	+				+2.3
1,555,406	+				-0.9
1,555,436	+				-0.2
1,555,436	+				-0.5
1,555,436	+				-0.1
1,555,436	+				+0.2
1,555,437	-				-1.6
1,555,441	+				-0.4
1,555,441	+				+0.2
1,555,442	-				-1.6
1,555,442	-				-1.0
1,555,462	+				-0.1
1,555,463	-				-1.1
1,555,463	-				-2.2
1,555,463	-				-1.4
1,555,539	-		HER17_RS07015	0.18	-1.2
1,555,576	+		HER17_RS07015	0.26	-0.0
1,555,576	+		HER17_RS07015	0.26	+1.2
1,555,577	-		HER17_RS07015	0.26	-1.0
1,555,585	+		HER17_RS07015	0.28	-0.8
1,555,681	-		HER17_RS07015	0.47	-1.0
1,555,681	-		HER17_RS07015	0.47	-1.8
1,555,690	+		HER17_RS07015	0.49	-0.5
1,555,690	+		HER17_RS07015	0.49	+0.3
1,555,691	-		HER17_RS07015	0.49	-0.6
1,555,691	-		HER17_RS07015	0.49	-2.1
1,555,691	-		HER17_RS07015	0.49	-1.2
1,555,691	-		HER17_RS07015	0.49	-1.6
1,555,698	+		HER17_RS07015	0.50	-0.1
1,555,698	+		HER17_RS07015	0.50	+0.4
1,555,698	+		HER17_RS07015	0.50	-1.1
1,555,698	+		HER17_RS07015	0.50	-1.0
1,555,699	-		HER17_RS07015	0.50	-2.0
1,555,809	+		HER17_RS07015	0.72	-0.3
1,555,809	+		HER17_RS07015	0.72	-0.4
1,555,857	-		HER17_RS07015	0.82	-1.7
1,555,874	-		HER17_RS07015	0.85	-0.7
1,555,874	-		HER17_RS07015	0.85	-1.9
1,555,874	-		HER17_RS07015	0.85	-0.4
1,555,874	-		HER17_RS07015	0.85	-1.2
1,555,874	-		HER17_RS07015	0.85	-2.3
1,555,875	+		HER17_RS07015	0.85	+0.1
1,555,875	+		HER17_RS07015	0.85	-1.7
1,555,875	+		HER17_RS07015	0.85	+0.4
1,555,876	-		HER17_RS07015	0.86	-2.6
1,555,876	-		HER17_RS07015	0.86	-1.6
1,555,876	-		HER17_RS07015	0.86	-2.3
1,555,935	-				-3.4
1,556,088	+				-1.5
1,556,159	+		HER17_RS07020	0.13	-2.4
1,556,160	-		HER17_RS07020	0.13	-0.6
1,556,160	-		HER17_RS07020	0.13	-1.7
1,556,236	+		HER17_RS07020	0.18	-2.2
1,556,236	+		HER17_RS07020	0.18	-3.5
1,556,236	+		HER17_RS07020	0.18	-0.6
1,556,236	+		HER17_RS07020	0.18	-1.2
1,556,237	-		HER17_RS07020	0.18	-1.2
1,556,237	-		HER17_RS07020	0.18	-1.3
1,556,237	-		HER17_RS07020	0.18	-2.9
1,556,241	+		HER17_RS07020	0.18	-3.3
1,556,241	+		HER17_RS07020	0.18	-2.3
1,556,470	+		HER17_RS07020	0.33	-2.9
1,556,471	-		HER17_RS07020	0.33	-2.7
1,556,471	-		HER17_RS07020	0.33	-2.6
1,556,581	+		HER17_RS07020	0.40	-3.4
1,556,581	+		HER17_RS07020	0.40	-0.6
1,556,581	+		HER17_RS07020	0.40	-2.3
1,556,581	+		HER17_RS07020	0.40	-1.4
1,556,582	-		HER17_RS07020	0.40	-1.5
1,556,583	+		HER17_RS07020	0.40	-2.2
1,556,583	+		HER17_RS07020	0.40	-3.3
1,556,583	+		HER17_RS07020	0.40	-2.2
1,556,583	+		HER17_RS07020	0.40	-1.9
1,556,583	+		HER17_RS07020	0.40	-1.6
1,556,583	+		HER17_RS07020	0.40	-2.6
1,556,583	+		HER17_RS07020	0.40	-2.4
1,556,583	+		HER17_RS07020	0.40	-1.9
1,556,584	-		HER17_RS07020	0.41	-1.0
1,556,584	-		HER17_RS07020	0.41	-1.1
1,556,584	-		HER17_RS07020	0.41	-3.9
1,556,584	-		HER17_RS07020	0.41	-4.7
1,556,584	-		HER17_RS07020	0.41	-2.5
1,556,584	-		HER17_RS07020	0.41	-3.2
1,556,584	-		HER17_RS07020	0.41	-2.9
1,556,662	+		HER17_RS07020	0.46	-3.5
1,556,662	+		HER17_RS07020	0.46	-1.1
1,556,662	+		HER17_RS07020	0.46	-3.9
1,556,663	-		HER17_RS07020	0.46	-3.3
1,556,663	-		HER17_RS07020	0.46	-2.5
1,556,663	-		HER17_RS07020	0.46	-1.6
1,556,737	+		HER17_RS07020	0.51	-2.7
1,556,737	+		HER17_RS07020	0.51	-2.9
1,556,738	-		HER17_RS07020	0.51	-2.9
1,556,743	+		HER17_RS07020	0.51	-2.9
1,556,744	-		HER17_RS07020	0.51	-1.4
1,556,744	-		HER17_RS07020	0.51	-1.6
1,556,744	-		HER17_RS07020	0.51	-2.2
1,556,974	-		HER17_RS07020	0.66	-1.2
1,556,974	-		HER17_RS07020	0.66	-3.1
1,557,015	+		HER17_RS07020	0.69	-3.2
1,557,016	-		HER17_RS07020	0.69	-1.2
1,557,016	-		HER17_RS07020	0.69	-2.9
1,557,088	-		HER17_RS07020	0.74	-0.2
1,557,143	-		HER17_RS07020	0.77	-3.4
1,557,250	-		HER17_RS07020	0.84	-3.4
1,557,318	+		HER17_RS07020	0.89	-2.5
1,557,364	+				-3.1
1,557,391	+				-1.4
1,557,392	-				-1.0
1,557,442	-				-0.8
1,557,491	+				-0.0
1,557,491	+				-0.2
1,557,491	+				+1.1
1,557,492	-				-0.1
1,557,492	-				-1.4
1,557,503	-				-0.0
1,557,503	-				-0.3
1,557,510	+				-0.5
1,557,551	+				+0.3
1,557,551	+				+1.0
1,557,551	+				-0.3
1,557,552	-				-0.4
1,557,552	-				+0.1
1,557,552	-				+0.2
1,557,552	-				-0.5
1,557,552	-				-0.2
1,557,555	+				-1.4
1,557,555	+				+0.1
1,557,569	+				-1.7
1,557,569	+				+0.5
1,557,570	-				+0.5
1,557,570	-				-1.2
1,557,573	+				+0.4
1,557,676	+				-0.4
1,557,676	+				+1.3
1,558,327	-				-0.2
1,558,378	-				+0.7
1,558,389	+				+0.4
1,558,424	-				+0.0
1,558,427	+				-0.2