Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05655

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS05645 and HER17_RS05650 are separated by 2 nucleotidesHER17_RS05650 and HER17_RS05655 are separated by 121 nucleotidesHER17_RS05655 and HER17_RS05660 are separated by 189 nucleotides HER17_RS05645: HER17_RS05645 - vitamin B12 ABC transporter substrate-binding protein BtuF, at 1,245,551 to 1,246,381 _RS05645 HER17_RS05650: HER17_RS05650 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 1,246,384 to 1,247,082 _RS05650 HER17_RS05655: HER17_RS05655 - dGTPase, at 1,247,204 to 1,248,715 _RS05655 HER17_RS05660: HER17_RS05660 - serine endoprotease DegP, at 1,248,905 to 1,250,344 _RS05660 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -3 -2 -1 0 1at 1246.273 kb on - strand, within HER17_RS05645at 1246.327 kb on - strandat 1246.356 kb on - strandat 1247.107 kb on - strandat 1247.121 kb on + strandat 1247.121 kb on + strandat 1247.122 kb on - strandat 1247.136 kb on + strandat 1247.136 kb on + strandat 1247.137 kb on - strandat 1247.137 kb on - strandat 1247.180 kb on + strandat 1247.203 kb on + strandat 1247.203 kb on + strandat 1247.204 kb on - strandat 1247.204 kb on - strandat 1247.246 kb on + strandat 1247.260 kb on + strandat 1247.261 kb on - strandat 1247.317 kb on + strandat 1247.320 kb on + strandat 1247.320 kb on + strandat 1247.321 kb on - strandat 1247.321 kb on - strandat 1247.321 kb on - strandat 1247.324 kb on - strandat 1247.324 kb on - strandat 1247.324 kb on - strandat 1247.324 kb on - strandat 1247.347 kb on - strandat 1247.373 kb on + strand, within HER17_RS05655at 1247.380 kb on + strand, within HER17_RS05655at 1247.380 kb on + strand, within HER17_RS05655at 1247.381 kb on - strand, within HER17_RS05655at 1247.381 kb on - strand, within HER17_RS05655at 1247.600 kb on - strand, within HER17_RS05655at 1247.633 kb on + strand, within HER17_RS05655at 1247.633 kb on + strand, within HER17_RS05655at 1247.671 kb on + strand, within HER17_RS05655at 1247.671 kb on + strand, within HER17_RS05655at 1247.671 kb on + strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.672 kb on - strand, within HER17_RS05655at 1247.680 kb on + strand, within HER17_RS05655at 1247.782 kb on + strand, within HER17_RS05655at 1247.782 kb on + strand, within HER17_RS05655at 1247.782 kb on + strand, within HER17_RS05655at 1247.782 kb on + strand, within HER17_RS05655at 1247.782 kb on + strand, within HER17_RS05655at 1247.783 kb on - strand, within HER17_RS05655at 1247.783 kb on - strand, within HER17_RS05655at 1247.808 kb on - strand, within HER17_RS05655at 1247.849 kb on + strand, within HER17_RS05655at 1247.876 kb on + strand, within HER17_RS05655at 1247.882 kb on + strand, within HER17_RS05655at 1247.882 kb on + strand, within HER17_RS05655at 1247.883 kb on - strand, within HER17_RS05655at 1247.883 kb on - strand, within HER17_RS05655at 1247.883 kb on - strand, within HER17_RS05655at 1247.903 kb on + strand, within HER17_RS05655at 1247.904 kb on - strand, within HER17_RS05655at 1247.904 kb on - strand, within HER17_RS05655at 1247.906 kb on + strand, within HER17_RS05655at 1247.906 kb on + strand, within HER17_RS05655at 1247.906 kb on + strand, within HER17_RS05655at 1247.907 kb on - strand, within HER17_RS05655at 1247.907 kb on - strand, within HER17_RS05655at 1247.984 kb on + strand, within HER17_RS05655at 1247.984 kb on + strand, within HER17_RS05655at 1247.984 kb on + strand, within HER17_RS05655at 1247.984 kb on + strand, within HER17_RS05655at 1247.985 kb on - strand, within HER17_RS05655at 1247.985 kb on - strand, within HER17_RS05655at 1247.985 kb on - strand, within HER17_RS05655at 1247.985 kb on - strand, within HER17_RS05655at 1248.015 kb on - strand, within HER17_RS05655at 1248.053 kb on - strand, within HER17_RS05655at 1248.074 kb on + strand, within HER17_RS05655at 1248.074 kb on + strand, within HER17_RS05655at 1248.074 kb on + strand, within HER17_RS05655at 1248.075 kb on - strand, within HER17_RS05655at 1248.075 kb on - strand, within HER17_RS05655at 1248.275 kb on + strand, within HER17_RS05655at 1248.275 kb on + strand, within HER17_RS05655at 1248.275 kb on + strand, within HER17_RS05655at 1248.276 kb on - strand, within HER17_RS05655at 1248.357 kb on + strand, within HER17_RS05655at 1248.370 kb on + strand, within HER17_RS05655at 1248.371 kb on - strand, within HER17_RS05655at 1248.399 kb on + strand, within HER17_RS05655at 1248.399 kb on + strand, within HER17_RS05655at 1248.400 kb on - strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.437 kb on + strand, within HER17_RS05655at 1248.438 kb on - strand, within HER17_RS05655at 1248.438 kb on - strand, within HER17_RS05655at 1248.438 kb on - strand, within HER17_RS05655at 1248.438 kb on - strand, within HER17_RS05655at 1248.438 kb on - strand, within HER17_RS05655at 1248.485 kb on - strand, within HER17_RS05655at 1248.493 kb on + strand, within HER17_RS05655at 1248.620 kb on + strandat 1248.621 kb on - strandat 1248.623 kb on + strandat 1248.623 kb on + strandat 1248.623 kb on + strandat 1248.624 kb on - strandat 1248.650 kb on + strandat 1248.650 kb on + strandat 1248.651 kb on - strandat 1248.651 kb on - strandat 1248.672 kb on + strandat 1248.673 kb on - strandat 1248.681 kb on - strandat 1248.751 kb on + strandat 1248.812 kb on + strandat 1248.812 kb on + strandat 1248.812 kb on + strandat 1248.813 kb on - strandat 1248.813 kb on - strandat 1248.816 kb on + strandat 1248.816 kb on + strandat 1248.816 kb on + strandat 1248.816 kb on + strandat 1248.816 kb on + strandat 1248.817 kb on - strandat 1248.817 kb on - strandat 1248.817 kb on - strandat 1248.817 kb on - strandat 1248.823 kb on + strandat 1248.824 kb on - strandat 1248.886 kb on + strandat 1248.886 kb on + strandat 1248.889 kb on + strandat 1248.889 kb on + strandat 1248.889 kb on + strandat 1248.889 kb on + strandat 1248.889 kb on + strandat 1248.889 kb on + strandat 1248.904 kb on + strandat 1249.020 kb on + strandat 1249.021 kb on - strandat 1249.037 kb on - strandat 1249.073 kb on + strand, within HER17_RS05660at 1249.073 kb on + strand, within HER17_RS05660at 1249.073 kb on + strand, within HER17_RS05660at 1249.074 kb on - strand, within HER17_RS05660at 1249.074 kb on - strand, within HER17_RS05660at 1249.074 kb on - strand, within HER17_RS05660at 1249.074 kb on - strand, within HER17_RS05660at 1249.087 kb on + strand, within HER17_RS05660at 1249.087 kb on + strand, within HER17_RS05660at 1249.087 kb on + strand, within HER17_RS05660at 1249.088 kb on - strand, within HER17_RS05660at 1249.111 kb on + strand, within HER17_RS05660at 1249.270 kb on + strand, within HER17_RS05660at 1249.270 kb on + strand, within HER17_RS05660at 1249.271 kb on - strand, within HER17_RS05660at 1249.286 kb on + strand, within HER17_RS05660at 1249.286 kb on + strand, within HER17_RS05660at 1249.286 kb on + strand, within HER17_RS05660at 1249.286 kb on + strand, within HER17_RS05660at 1249.315 kb on + strand, within HER17_RS05660at 1249.358 kb on + strand, within HER17_RS05660at 1249.384 kb on + strand, within HER17_RS05660at 1249.385 kb on - strand, within HER17_RS05660at 1249.385 kb on - strand, within HER17_RS05660at 1249.385 kb on - strand, within HER17_RS05660at 1249.397 kb on - strand, within HER17_RS05660at 1249.441 kb on + strand, within HER17_RS05660at 1249.442 kb on - strand, within HER17_RS05660at 1249.479 kb on - strand, within HER17_RS05660at 1249.480 kb on + strand, within HER17_RS05660at 1249.480 kb on + strand, within HER17_RS05660at 1249.496 kb on - strand, within HER17_RS05660at 1249.586 kb on - strand, within HER17_RS05660

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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1,246,273 - HER17_RS05645 0.87 -0.2
1,246,327 - -1.5
1,246,356 - -0.0
1,247,107 - +0.2
1,247,121 + -0.6
1,247,121 + +0.5
1,247,122 - -1.4
1,247,136 + -0.7
1,247,136 + +0.4
1,247,137 - -0.0
1,247,137 - +0.6
1,247,180 + -0.0
1,247,203 + +1.3
1,247,203 + +0.4
1,247,204 - +0.5
1,247,204 - +0.0
1,247,246 + +0.3
1,247,260 + -0.2
1,247,261 - -0.1
1,247,317 + +0.1
1,247,320 + +0.7
1,247,320 + -0.8
1,247,321 - -0.5
1,247,321 - +0.1
1,247,321 - +0.8
1,247,324 - +0.5
1,247,324 - +0.6
1,247,324 - -0.2
1,247,324 - +0.3
1,247,347 - -0.1
1,247,373 + HER17_RS05655 0.11 +1.3
1,247,380 + HER17_RS05655 0.12 +0.3
1,247,380 + HER17_RS05655 0.12 +0.3
1,247,381 - HER17_RS05655 0.12 -1.1
1,247,381 - HER17_RS05655 0.12 +0.2
1,247,600 - HER17_RS05655 0.26 -1.3
1,247,633 + HER17_RS05655 0.28 +0.9
1,247,633 + HER17_RS05655 0.28 -0.2
1,247,671 + HER17_RS05655 0.31 -1.5
1,247,671 + HER17_RS05655 0.31 +0.3
1,247,671 + HER17_RS05655 0.31 +0.5
1,247,672 - HER17_RS05655 0.31 +0.4
1,247,672 - HER17_RS05655 0.31 +0.3
1,247,672 - HER17_RS05655 0.31 +0.9
1,247,672 - HER17_RS05655 0.31 +0.4
1,247,672 - HER17_RS05655 0.31 +0.3
1,247,672 - HER17_RS05655 0.31 +0.8
1,247,680 + HER17_RS05655 0.31 +0.7
1,247,782 + HER17_RS05655 0.38 +0.4
1,247,782 + HER17_RS05655 0.38 +0.6
1,247,782 + HER17_RS05655 0.38 +1.2
1,247,782 + HER17_RS05655 0.38 +0.6
1,247,782 + HER17_RS05655 0.38 -0.3
1,247,783 - HER17_RS05655 0.38 +1.1
1,247,783 - HER17_RS05655 0.38 -0.9
1,247,808 - HER17_RS05655 0.40 +0.1
1,247,849 + HER17_RS05655 0.43 +0.1
1,247,876 + HER17_RS05655 0.44 +0.2
1,247,882 + HER17_RS05655 0.45 +1.1
1,247,882 + HER17_RS05655 0.45 +0.2
1,247,883 - HER17_RS05655 0.45 +0.5
1,247,883 - HER17_RS05655 0.45 -0.5
1,247,883 - HER17_RS05655 0.45 -1.5
1,247,903 + HER17_RS05655 0.46 -0.7
1,247,904 - HER17_RS05655 0.46 -0.2
1,247,904 - HER17_RS05655 0.46 +0.2
1,247,906 + HER17_RS05655 0.46 +0.5
1,247,906 + HER17_RS05655 0.46 -0.0
1,247,906 + HER17_RS05655 0.46 +0.3
1,247,907 - HER17_RS05655 0.46 +0.2
1,247,907 - HER17_RS05655 0.46 -0.8
1,247,984 + HER17_RS05655 0.52 -1.0
1,247,984 + HER17_RS05655 0.52 +0.0
1,247,984 + HER17_RS05655 0.52 -2.8
1,247,984 + HER17_RS05655 0.52 +0.5
1,247,985 - HER17_RS05655 0.52 -0.9
1,247,985 - HER17_RS05655 0.52 +0.4
1,247,985 - HER17_RS05655 0.52 -1.1
1,247,985 - HER17_RS05655 0.52 +0.4
1,248,015 - HER17_RS05655 0.54 -0.3
1,248,053 - HER17_RS05655 0.56 +0.3
1,248,074 + HER17_RS05655 0.58 +0.2
1,248,074 + HER17_RS05655 0.58 +0.5
1,248,074 + HER17_RS05655 0.58 -0.2
1,248,075 - HER17_RS05655 0.58 +0.5
1,248,075 - HER17_RS05655 0.58 +1.1
1,248,275 + HER17_RS05655 0.71 -1.8
1,248,275 + HER17_RS05655 0.71 +0.3
1,248,275 + HER17_RS05655 0.71 -0.7
1,248,276 - HER17_RS05655 0.71 -0.4
1,248,357 + HER17_RS05655 0.76 +0.2
1,248,370 + HER17_RS05655 0.77 +0.9
1,248,371 - HER17_RS05655 0.77 +0.5
1,248,399 + HER17_RS05655 0.79 -0.5
1,248,399 + HER17_RS05655 0.79 -0.0
1,248,400 - HER17_RS05655 0.79 -0.0
1,248,437 + HER17_RS05655 0.82 +0.8
1,248,437 + HER17_RS05655 0.82 +1.1
1,248,437 + HER17_RS05655 0.82 -0.1
1,248,437 + HER17_RS05655 0.82 +0.5
1,248,437 + HER17_RS05655 0.82 -0.5
1,248,437 + HER17_RS05655 0.82 +0.5
1,248,437 + HER17_RS05655 0.82 -0.5
1,248,437 + HER17_RS05655 0.82 +0.2
1,248,438 - HER17_RS05655 0.82 +0.4
1,248,438 - HER17_RS05655 0.82 -1.1
1,248,438 - HER17_RS05655 0.82 +0.0
1,248,438 - HER17_RS05655 0.82 -0.4
1,248,438 - HER17_RS05655 0.82 -0.5
1,248,485 - HER17_RS05655 0.85 -0.5
1,248,493 + HER17_RS05655 0.85 -0.5
1,248,620 + +0.2
1,248,621 - +0.1
1,248,623 + +0.5
1,248,623 + +0.9
1,248,623 + -0.1
1,248,624 - -1.0
1,248,650 + +0.3
1,248,650 + +0.2
1,248,651 - +0.2
1,248,651 - -0.7
1,248,672 + +0.0
1,248,673 - -0.8
1,248,681 - -1.4
1,248,751 + -1.7
1,248,812 + +0.1
1,248,812 + -0.4
1,248,812 + -1.0
1,248,813 - +0.7
1,248,813 - -0.1
1,248,816 + -0.3
1,248,816 + +0.2
1,248,816 + +0.5
1,248,816 + -0.1
1,248,816 + -0.0
1,248,817 - -0.4
1,248,817 - +0.0
1,248,817 - +0.3
1,248,817 - +0.3
1,248,823 + +0.1
1,248,824 - +0.3
1,248,886 + +1.1
1,248,886 + +0.1
1,248,889 + +0.9
1,248,889 + -0.5
1,248,889 + -2.3
1,248,889 + +0.3
1,248,889 + +0.4
1,248,889 + -1.9
1,248,904 + -0.2
1,249,020 + +1.3
1,249,021 - -0.7
1,249,037 - -0.1
1,249,073 + HER17_RS05660 0.12 +0.5
1,249,073 + HER17_RS05660 0.12 +1.1
1,249,073 + HER17_RS05660 0.12 +0.4
1,249,074 - HER17_RS05660 0.12 -0.7
1,249,074 - HER17_RS05660 0.12 +0.1
1,249,074 - HER17_RS05660 0.12 +0.6
1,249,074 - HER17_RS05660 0.12 +1.3
1,249,087 + HER17_RS05660 0.13 +0.6
1,249,087 + HER17_RS05660 0.13 +0.7
1,249,087 + HER17_RS05660 0.13 -0.1
1,249,088 - HER17_RS05660 0.13 -0.7
1,249,111 + HER17_RS05660 0.14 -0.8
1,249,270 + HER17_RS05660 0.25 -0.4
1,249,270 + HER17_RS05660 0.25 -0.3
1,249,271 - HER17_RS05660 0.25 -0.1
1,249,286 + HER17_RS05660 0.26 -0.3
1,249,286 + HER17_RS05660 0.26 -1.0
1,249,286 + HER17_RS05660 0.26 -0.4
1,249,286 + HER17_RS05660 0.26 -1.2
1,249,315 + HER17_RS05660 0.28 -0.5
1,249,358 + HER17_RS05660 0.31 -0.6
1,249,384 + HER17_RS05660 0.33 +0.2
1,249,385 - HER17_RS05660 0.33 +0.6
1,249,385 - HER17_RS05660 0.33 -0.2
1,249,385 - HER17_RS05660 0.33 -0.9
1,249,397 - HER17_RS05660 0.34 +0.3
1,249,441 + HER17_RS05660 0.37 -0.7
1,249,442 - HER17_RS05660 0.37 -1.2
1,249,479 - HER17_RS05660 0.40 -1.5
1,249,480 + HER17_RS05660 0.40 -0.3
1,249,480 + HER17_RS05660 0.40 +0.4
1,249,496 - HER17_RS05660 0.41 +1.0
1,249,586 - HER17_RS05660 0.47 -1.3

Or see this region's nucleotide sequence