Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05225

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS21850 and HER17_RS21910 overlap by 80 nucleotidesHER17_RS21910 and HER17_RS05220 overlap by 4 nucleotidesHER17_RS05220 and HER17_RS05225 overlap by 17 nucleotidesHER17_RS05225 and HER17_RS05230 overlap by 10 nucleotidesHER17_RS05230 and HER17_RS05235 overlap by 1 nucleotidesHER17_RS05235 and HER17_RS05240 are separated by 91 nucleotides HER17_RS21850: HER17_RS21850 - Rz1-like lysis system protein LysC, at 1,166,313 to 1,166,603 _RS21850 HER17_RS21910: HER17_RS21910 - Rz-like lysis system protein LysB, at 1,166,524 to 1,166,883 _RS21910 HER17_RS05220: HER17_RS05220 - lysozyme, at 1,166,880 to 1,167,389 _RS05220 HER17_RS05225: HER17_RS05225 - HP1 family phage holin, at 1,167,373 to 1,167,594 _RS05225 HER17_RS05230: HER17_RS05230 - tail protein X, at 1,167,585 to 1,167,788 _RS05230 HER17_RS05235: HER17_RS05235 - head completion/stabilization protein, at 1,167,788 to 1,168,291 _RS05235 HER17_RS05240: HER17_RS05240 - terminase endonuclease subunit, at 1,168,383 to 1,169,042 _RS05240 Position (kb) 1167 1168Strain fitness (log2 ratio) -2 -1 0 1at 1166.415 kb on + strand, within HER17_RS21850at 1166.415 kb on + strand, within HER17_RS21850at 1166.415 kb on + strand, within HER17_RS21850at 1166.503 kb on + strand, within HER17_RS21850at 1166.507 kb on + strand, within HER17_RS21850at 1166.768 kb on - strand, within HER17_RS21910at 1166.786 kb on - strand, within HER17_RS21910at 1166.817 kb on + strand, within HER17_RS21910at 1166.825 kb on + strand, within HER17_RS21910at 1166.825 kb on + strand, within HER17_RS21910at 1166.826 kb on - strand, within HER17_RS21910at 1166.826 kb on - strand, within HER17_RS21910at 1166.864 kb on - strandat 1166.878 kb on - strandat 1166.878 kb on - strandat 1166.895 kb on - strandat 1166.895 kb on - strandat 1166.944 kb on - strand, within HER17_RS05220at 1167.027 kb on - strand, within HER17_RS05220at 1167.082 kb on + strand, within HER17_RS05220at 1167.110 kb on + strand, within HER17_RS05220at 1167.250 kb on + strand, within HER17_RS05220at 1167.259 kb on - strand, within HER17_RS05220at 1167.393 kb on + strandat 1167.415 kb on - strand, within HER17_RS05225at 1167.421 kb on + strand, within HER17_RS05225at 1167.422 kb on - strand, within HER17_RS05225at 1167.422 kb on - strand, within HER17_RS05225at 1167.425 kb on - strand, within HER17_RS05225at 1167.425 kb on - strand, within HER17_RS05225at 1167.447 kb on - strand, within HER17_RS05225at 1167.447 kb on - strand, within HER17_RS05225at 1167.450 kb on - strand, within HER17_RS05225at 1167.450 kb on - strand, within HER17_RS05225at 1167.548 kb on - strand, within HER17_RS05225at 1167.582 kb on + strandat 1167.918 kb on + strand, within HER17_RS05235at 1167.936 kb on + strand, within HER17_RS05235at 1167.936 kb on + strand, within HER17_RS05235at 1167.975 kb on + strand, within HER17_RS05235at 1167.975 kb on + strand, within HER17_RS05235at 1168.037 kb on - strand, within HER17_RS05235at 1168.105 kb on + strand, within HER17_RS05235at 1168.178 kb on + strand, within HER17_RS05235at 1168.178 kb on + strand, within HER17_RS05235at 1168.178 kb on + strand, within HER17_RS05235at 1168.454 kb on + strand, within HER17_RS05240

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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1,166,415 + HER17_RS21850 0.35 +0.3
1,166,415 + HER17_RS21850 0.35 -1.4
1,166,415 + HER17_RS21850 0.35 +1.2
1,166,503 + HER17_RS21850 0.65 +1.6
1,166,507 + HER17_RS21850 0.67 +1.1
1,166,768 - HER17_RS21910 0.68 +0.4
1,166,786 - HER17_RS21910 0.73 -0.8
1,166,817 + HER17_RS21910 0.81 +0.2
1,166,825 + HER17_RS21910 0.84 +0.7
1,166,825 + HER17_RS21910 0.84 -2.0
1,166,826 - HER17_RS21910 0.84 -0.2
1,166,826 - HER17_RS21910 0.84 +0.9
1,166,864 - -0.7
1,166,878 - +0.6
1,166,878 - +0.2
1,166,895 - +0.5
1,166,895 - +0.3
1,166,944 - HER17_RS05220 0.13 -0.2
1,167,027 - HER17_RS05220 0.29 +0.3
1,167,082 + HER17_RS05220 0.40 +0.8
1,167,110 + HER17_RS05220 0.45 +1.1
1,167,250 + HER17_RS05220 0.73 +1.1
1,167,259 - HER17_RS05220 0.74 +1.0
1,167,393 + -0.5
1,167,415 - HER17_RS05225 0.19 -0.6
1,167,421 + HER17_RS05225 0.22 -0.8
1,167,422 - HER17_RS05225 0.22 -0.2
1,167,422 - HER17_RS05225 0.22 -0.2
1,167,425 - HER17_RS05225 0.23 -0.5
1,167,425 - HER17_RS05225 0.23 +0.6
1,167,447 - HER17_RS05225 0.33 +0.7
1,167,447 - HER17_RS05225 0.33 +1.4
1,167,450 - HER17_RS05225 0.35 -0.1
1,167,450 - HER17_RS05225 0.35 +0.8
1,167,548 - HER17_RS05225 0.79 -0.8
1,167,582 + +0.0
1,167,918 + HER17_RS05235 0.26 -0.5
1,167,936 + HER17_RS05235 0.29 -0.5
1,167,936 + HER17_RS05235 0.29 -0.1
1,167,975 + HER17_RS05235 0.37 -0.2
1,167,975 + HER17_RS05235 0.37 +1.0
1,168,037 - HER17_RS05235 0.49 -0.9
1,168,105 + HER17_RS05235 0.63 -0.6
1,168,178 + HER17_RS05235 0.77 +0.0
1,168,178 + HER17_RS05235 0.77 -0.4
1,168,178 + HER17_RS05235 0.77 +0.4
1,168,454 + HER17_RS05240 0.11 +0.6

Or see this region's nucleotide sequence