Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04660

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,056,201	+				+0.0
1,056,222	+				-0.5
1,056,223	-				-1.2
1,056,228	-				-1.7
1,056,267	+				-1.6
1,056,267	+				+1.2
1,056,268	-				-0.2
1,056,268	-				+0.8
1,056,314	-		HER17_RS04655	0.16	+0.3
1,056,319	-		HER17_RS04655	0.16	+0.9
1,056,324	+		HER17_RS04655	0.17	-0.4
1,056,357	+		HER17_RS04655	0.21	-0.4
1,056,367	+		HER17_RS04655	0.23	-0.7
1,056,397	+		HER17_RS04655	0.27	-1.4
1,056,398	-		HER17_RS04655	0.27	+1.0
1,056,408	+		HER17_RS04655	0.28	+1.9
1,056,408	+		HER17_RS04655	0.28	+0.9
1,056,409	-		HER17_RS04655	0.28	-0.0
1,056,465	+		HER17_RS04655	0.36	-0.5
1,056,465	+		HER17_RS04655	0.36	+0.2
1,056,466	-		HER17_RS04655	0.36	+0.8
1,056,478	+		HER17_RS04655	0.38	+0.3
1,056,478	+		HER17_RS04655	0.38	+0.4
1,056,478	+		HER17_RS04655	0.38	+0.4
1,056,478	+		HER17_RS04655	0.38	-0.8
1,056,480	+		HER17_RS04655	0.38	-2.2
1,056,480	+		HER17_RS04655	0.38	+0.5
1,056,480	+		HER17_RS04655	0.38	-0.6
1,056,480	+		HER17_RS04655	0.38	+0.2
1,056,480	+		HER17_RS04655	0.38	-0.1
1,056,480	+		HER17_RS04655	0.38	+0.8
1,056,480	+		HER17_RS04655	0.38	-0.5
1,056,480	+		HER17_RS04655	0.38	-0.1
1,056,480	+		HER17_RS04655	0.38	+0.7
1,056,480	+		HER17_RS04655	0.38	-0.3
1,056,480	+		HER17_RS04655	0.38	-0.6
1,056,481	-		HER17_RS04655	0.38	+0.1
1,056,481	-		HER17_RS04655	0.38	-0.4
1,056,481	-		HER17_RS04655	0.38	+0.4
1,056,498	+		HER17_RS04655	0.41	+0.4
1,056,498	+		HER17_RS04655	0.41	+0.0
1,056,499	-		HER17_RS04655	0.41	-0.4
1,056,499	-		HER17_RS04655	0.41	-0.3
1,056,537	+		HER17_RS04655	0.46	-0.4
1,056,562	+		HER17_RS04655	0.49	+0.4
1,056,562	+		HER17_RS04655	0.49	+1.4
1,056,563	-		HER17_RS04655	0.49	+0.5
1,056,567	+		HER17_RS04655	0.50	-0.4
1,056,568	-		HER17_RS04655	0.50	+0.9
1,056,568	-		HER17_RS04655	0.50	+0.1
1,056,603	+		HER17_RS04655	0.55	+0.1
1,056,689	+		HER17_RS04655	0.67	+0.2
1,056,690	-		HER17_RS04655	0.67	-0.0
1,056,702	+		HER17_RS04655	0.68	+0.2
1,056,706	+		HER17_RS04655	0.69	-1.0
1,056,707	-		HER17_RS04655	0.69	-0.2
1,056,707	-		HER17_RS04655	0.69	-0.2
1,056,718	-		HER17_RS04655	0.70	+0.9
1,056,795	+		HER17_RS04655	0.81	+0.0
1,056,795	+		HER17_RS04655	0.81	+0.7
1,056,796	-		HER17_RS04655	0.81	-0.6
1,056,810	-		HER17_RS04655	0.83	+1.1
1,056,812	+		HER17_RS04655	0.83	+1.8
1,056,812	+		HER17_RS04655	0.83	+1.1
1,056,813	-		HER17_RS04655	0.83	-0.2
1,056,813	-		HER17_RS04655	0.83	-0.0
1,056,813	-		HER17_RS04655	0.83	+0.6
1,056,813	-		HER17_RS04655	0.83	+0.1
1,056,824	+		HER17_RS04655	0.85	+0.6
1,056,825	-		HER17_RS04655	0.85	+0.5
1,056,936	-				-0.9
1,056,936	-				+0.5
1,056,936	-				+0.1
1,056,951	-				+0.3
1,056,963	+				+0.1
1,056,963	+				-0.0
1,056,964	-				-0.7
1,056,964	-				-0.3
1,057,027	+				+0.2
1,057,028	-				+0.4
1,057,028	-				+0.1
1,057,028	-				-0.0
1,057,029	+				+0.5
1,057,030	-				-0.0
1,057,031	+				+0.2
1,057,032	-				+1.4
1,057,032	-				-0.0
1,057,032	-				+0.2
1,057,032	-				+1.0
1,057,032	-				-0.4
1,057,032	-				+0.3
1,057,046	+				-0.1
1,057,074	-				+0.7
1,057,074	-				+0.0
1,057,087	+				-0.7
1,057,087	+				+0.1
1,057,088	-				+0.0
1,057,088	-				+0.0
1,057,090	+				-0.4
1,057,209	+				-0.2
1,057,209	+				+0.0
1,057,209	+				-0.3
1,057,210	-				-0.3
1,057,210	-				+0.3
1,057,210	-				-0.1
1,057,210	-				-0.1
1,057,210	-				+0.6
1,057,217	+				+0.8
1,057,217	+				+0.8
1,057,217	+				-0.5
1,057,218	-				-0.9
1,057,218	-				-0.5
1,057,218	-				+0.4
1,057,218	-				+0.4
1,057,248	+				-0.4
1,057,263	+				+0.0
1,057,331	+		HER17_RS04660	0.18	-0.1
1,057,332	-		HER17_RS04660	0.18	+0.0
1,057,332	-		HER17_RS04660	0.18	-0.2
1,057,332	-		HER17_RS04660	0.18	+1.5
1,057,483	+		HER17_RS04660	0.38	-0.7
1,057,483	+		HER17_RS04660	0.38	+0.3
1,057,483	+		HER17_RS04660	0.38	-0.0
1,057,483	+		HER17_RS04660	0.38	+0.1
1,057,484	-		HER17_RS04660	0.38	-1.1
1,057,484	-		HER17_RS04660	0.38	+0.1
1,057,484	-		HER17_RS04660	0.38	+0.2
1,057,622	+		HER17_RS04660	0.56	+0.2
1,057,623	-		HER17_RS04660	0.56	+0.3
1,057,623	-		HER17_RS04660	0.56	+0.7
1,057,660	-		HER17_RS04660	0.61	+0.0
1,057,680	-		HER17_RS04660	0.63	-1.7
1,057,745	-		HER17_RS04660	0.72	-0.2
1,057,839	+		HER17_RS04660	0.84	+0.0
1,057,839	+		HER17_RS04660	0.84	-0.2
1,057,839	+		HER17_RS04660	0.84	+0.2
1,057,840	-		HER17_RS04660	0.84	+1.1
1,057,840	-		HER17_RS04660	0.84	+0.9
1,057,843	-		HER17_RS04660	0.85	+0.0
1,057,843	-		HER17_RS04660	0.85	-0.5
1,057,860	+		HER17_RS04660	0.87	-0.4
1,057,897	+				-0.1
1,057,898	-				-0.1
1,057,941	-				+1.3
1,057,941	-				+1.4
1,058,054	+				+1.1
1,058,054	+				+0.0
1,058,054	+				-0.7
1,058,054	+				+0.6
1,058,055	-				-0.4
1,058,055	-				-0.0
1,058,055	-				-0.2
1,058,056	+				+0.1
1,058,056	+				+0.6
1,058,056	+				+0.2
1,058,056	+				-0.8
1,058,056	+				+0.3
1,058,057	-				-0.2
1,058,076	+				-0.5
1,058,082	-				+0.1
1,058,082	-				+0.1
1,058,093	+				+0.7
1,058,102	-				-0.1
1,058,102	-				+0.0
1,058,102	-				-1.0
1,058,162	+				-0.4
1,058,163	-				+1.4
1,058,163	-				+0.3
1,058,163	-				+0.1
1,058,168	-				+0.7
1,058,192	+				-0.8
1,058,192	+				+0.0
1,058,192	+				+0.4
1,058,192	+				-0.2
1,058,193	-				+0.0
1,058,193	-				-1.0
1,058,193	-				+0.1
1,058,279	+		HER17_RS04665	0.11	-0.2
1,058,379	+		HER17_RS04665	0.23	+0.5
1,058,379	+		HER17_RS04665	0.23	+1.0
1,058,380	-		HER17_RS04665	0.23	+0.1
1,058,381	+		HER17_RS04665	0.23	-0.0
1,058,382	-		HER17_RS04665	0.24	+0.2
1,058,382	-		HER17_RS04665	0.24	+0.3
1,058,484	-		HER17_RS04665	0.36	-0.4
1,058,520	-		HER17_RS04665	0.41	+0.2
1,058,567	+		HER17_RS04665	0.47	-0.5
1,058,568	-		HER17_RS04665	0.47	+0.1
1,058,568	-		HER17_RS04665	0.47	+0.6
1,058,568	-		HER17_RS04665	0.47	-1.0
1,058,568	-		HER17_RS04665	0.47	+2.1
1,058,580	+		HER17_RS04665	0.48	+0.4
1,058,580	+		HER17_RS04665	0.48	-0.4
1,058,594	+		HER17_RS04665	0.50	-0.4
1,058,595	-		HER17_RS04665	0.50	-0.1
1,058,603	+		HER17_RS04665	0.51	-0.4
1,058,603	+		HER17_RS04665	0.51	+0.9
1,058,604	-		HER17_RS04665	0.51	+0.8
1,058,604	-		HER17_RS04665	0.51	-0.3
1,058,778	+		HER17_RS04665	0.73	-0.6