Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01915

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01910 and HER17_RS01915 are separated by 158 nucleotidesHER17_RS01915 and HER17_RS01920 are separated by 373 nucleotidesHER17_RS01920 and HER17_RS01925 are separated by 38 nucleotides HER17_RS01910: HER17_RS01910 - aspartate aminotransferase family protein, at 448,705 to 449,931 _RS01910 HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722 _RS01915 HER17_RS01920: HER17_RS01920 - OsmC family protein, at 451,096 to 451,503 _RS01920 HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411 _RS01925 Position (kb) 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 449.116 kb on + strand, within HER17_RS01910at 449.116 kb on + strand, within HER17_RS01910at 449.116 kb on + strand, within HER17_RS01910at 449.169 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.194 kb on - strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.375 kb on + strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.417 kb on + strand, within HER17_RS01910at 449.417 kb on + strand, within HER17_RS01910at 449.440 kb on - strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.544 kb on - strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.558 kb on - strand, within HER17_RS01910at 449.558 kb on - strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.610 kb on + strand, within HER17_RS01910at 449.624 kb on + strand, within HER17_RS01910at 449.624 kb on + strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.697 kb on - strand, within HER17_RS01910at 449.803 kb on - strand, within HER17_RS01910at 449.803 kb on - strand, within HER17_RS01910at 449.841 kb on - strandat 449.868 kb on + strandat 449.933 kb on + strandat 449.934 kb on - strandat 449.934 kb on - strandat 449.934 kb on - strandat 449.965 kb on + strandat 449.966 kb on - strandat 450.065 kb on - strandat 450.071 kb on - strandat 450.075 kb on + strandat 450.760 kb on - strandat 450.792 kb on - strandat 450.840 kb on - strandat 450.842 kb on - strandat 450.842 kb on - strandat 450.856 kb on - strandat 450.856 kb on - strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.906 kb on - strandat 450.906 kb on - strandat 450.908 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.959 kb on + strandat 450.960 kb on - strandat 450.976 kb on - strandat 451.214 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.429 kb on + strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.488 kb on + strandat 451.501 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.594 kb on - strandat 451.594 kb on - strandat 451.652 kb on + strand, within HER17_RS01925at 451.652 kb on + strand, within HER17_RS01925at 451.653 kb on - strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.687 kb on + strand, within HER17_RS01925at 451.693 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.695 kb on - strand, within HER17_RS01925

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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449,116 + HER17_RS01910 0.33 -1.3
449,116 + HER17_RS01910 0.33 -3.3
449,116 + HER17_RS01910 0.33 -2.9
449,169 + HER17_RS01910 0.38 -3.6
449,173 + HER17_RS01910 0.38 -1.2
449,173 + HER17_RS01910 0.38 -2.0
449,173 + HER17_RS01910 0.38 -3.1
449,174 - HER17_RS01910 0.38 -2.3
449,174 - HER17_RS01910 0.38 -1.9
449,174 - HER17_RS01910 0.38 -1.9
449,174 - HER17_RS01910 0.38 -2.3
449,174 - HER17_RS01910 0.38 -3.0
449,194 - HER17_RS01910 0.40 -1.3
449,262 + HER17_RS01910 0.45 -2.1
449,262 + HER17_RS01910 0.45 -1.0
449,262 + HER17_RS01910 0.45 -1.9
449,262 + HER17_RS01910 0.45 -3.1
449,262 + HER17_RS01910 0.45 -3.8
449,262 + HER17_RS01910 0.45 -1.7
449,263 - HER17_RS01910 0.45 -2.6
449,263 - HER17_RS01910 0.45 -2.6
449,263 - HER17_RS01910 0.45 -4.6
449,263 - HER17_RS01910 0.45 -1.8
449,375 + HER17_RS01910 0.55 -3.1
449,376 - HER17_RS01910 0.55 -3.1
449,376 - HER17_RS01910 0.55 -2.3
449,376 - HER17_RS01910 0.55 -2.9
449,417 + HER17_RS01910 0.58 -2.0
449,417 + HER17_RS01910 0.58 -1.6
449,440 - HER17_RS01910 0.60 -4.1
449,442 + HER17_RS01910 0.60 -1.3
449,442 + HER17_RS01910 0.60 -2.8
449,442 + HER17_RS01910 0.60 -2.9
449,544 - HER17_RS01910 0.68 -1.7
449,557 + HER17_RS01910 0.69 -2.8
449,557 + HER17_RS01910 0.69 -1.8
449,557 + HER17_RS01910 0.69 -3.6
449,557 + HER17_RS01910 0.69 -1.3
449,558 - HER17_RS01910 0.70 -2.3
449,558 - HER17_RS01910 0.70 -2.8
449,607 + HER17_RS01910 0.74 -2.0
449,607 + HER17_RS01910 0.74 -3.2
449,607 + HER17_RS01910 0.74 -2.2
449,607 + HER17_RS01910 0.74 -1.7
449,608 - HER17_RS01910 0.74 -2.4
449,608 - HER17_RS01910 0.74 -2.3
449,608 - HER17_RS01910 0.74 -2.4
449,608 - HER17_RS01910 0.74 -2.8
449,610 + HER17_RS01910 0.74 -2.6
449,624 + HER17_RS01910 0.75 -2.9
449,624 + HER17_RS01910 0.75 -4.2
449,625 - HER17_RS01910 0.75 -2.8
449,625 - HER17_RS01910 0.75 -1.8
449,625 - HER17_RS01910 0.75 -2.4
449,697 - HER17_RS01910 0.81 -3.4
449,803 - HER17_RS01910 0.89 -4.0
449,803 - HER17_RS01910 0.89 -2.3
449,841 - -2.3
449,868 + -2.1
449,933 + +0.2
449,934 - -0.2
449,934 - -0.3
449,934 - +0.4
449,965 + -1.5
449,966 - -0.2
450,065 - +0.2
450,071 - +0.9
450,075 + -0.1
450,760 - +0.2
450,792 - +0.7
450,840 - -1.3
450,842 - +0.2
450,842 - +0.9
450,856 - -0.7
450,856 - -1.1
450,905 + -1.0
450,905 + -1.8
450,905 + -0.8
450,906 - +0.9
450,906 - -0.3
450,908 - -0.4
450,920 - +1.2
450,920 - -0.2
450,920 - -0.4
450,959 + -0.2
450,960 - +0.4
450,976 - -0.2
451,214 + HER17_RS01920 0.29 -0.2
451,341 + HER17_RS01920 0.60 +0.3
451,341 + HER17_RS01920 0.60 +0.6
451,429 + HER17_RS01920 0.82 +1.0
451,430 - HER17_RS01920 0.82 +0.2
451,430 - HER17_RS01920 0.82 -0.1
451,430 - HER17_RS01920 0.82 +0.2
451,488 + -0.4
451,501 + -0.0
451,593 + +1.0
451,593 + +0.5
451,593 + +0.6
451,593 + -0.5
451,594 - -0.1
451,594 - -0.2
451,652 + HER17_RS01925 0.13 -4.4
451,652 + HER17_RS01925 0.13 -0.4
451,653 - HER17_RS01925 0.13 +0.5
451,681 + HER17_RS01925 0.16 -0.5
451,681 + HER17_RS01925 0.16 +0.1
451,681 + HER17_RS01925 0.16 -0.3
451,687 + HER17_RS01925 0.17 -0.1
451,693 + HER17_RS01925 0.17 -0.3
451,694 + HER17_RS01925 0.17 -0.2
451,694 + HER17_RS01925 0.17 -0.6
451,695 - HER17_RS01925 0.18 +0.2

Or see this region's nucleotide sequence