Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00350 and HER17_RS00355 are separated by 992 nucleotides HER17_RS00355 and HER17_RS00360 are separated by 6 nucleotides
HER17_RS00350: HER17_RS00350 - cellulose biosynthesis protein BcsC, at 79,742 to 83,311
_RS00350
HER17_RS00355: HER17_RS00355 - cellulase, at 84,304 to 85,419
_RS00355
HER17_RS00360: HER17_RS00360 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 85,426 to 87,753
_RS00360
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2
3 at 83.311 kb on + strand at 83.312 kb on - strand at 83.312 kb on - strand at 83.312 kb on - strand at 83.321 kb on + strand at 83.321 kb on + strand at 83.322 kb on - strand at 83.432 kb on - strand at 83.488 kb on + strand at 83.489 kb on - strand at 83.505 kb on + strand at 83.506 kb on - strand at 83.509 kb on + strand at 83.509 kb on + strand at 83.510 kb on - strand at 83.578 kb on + strand at 83.578 kb on + strand at 83.579 kb on - strand at 83.579 kb on - strand at 83.582 kb on + strand at 83.582 kb on + strand at 83.583 kb on - strand at 83.588 kb on + strand at 83.589 kb on - strand at 83.600 kb on + strand at 83.600 kb on + strand at 83.601 kb on - strand at 83.601 kb on - strand at 83.655 kb on - strand at 83.655 kb on - strand at 83.726 kb on - strand at 83.748 kb on + strand at 83.748 kb on + strand at 83.749 kb on - strand at 83.749 kb on - strand at 83.762 kb on - strand at 83.813 kb on - strand at 83.849 kb on + strand at 83.850 kb on - strand at 83.932 kb on - strand at 83.944 kb on + strand at 83.944 kb on + strand at 83.945 kb on - strand at 83.949 kb on - strand at 83.949 kb on - strand at 83.966 kb on + strand at 84.002 kb on + strand at 84.002 kb on + strand at 84.003 kb on - strand at 84.021 kb on + strand at 84.108 kb on - strand at 84.133 kb on + strand at 84.133 kb on + strand at 84.134 kb on - strand at 84.145 kb on + strand at 84.145 kb on + strand at 84.160 kb on - strand at 84.419 kb on + strand, within HER17_RS00355 at 84.420 kb on - strand, within HER17_RS00355 at 84.420 kb on - strand, within HER17_RS00355 at 84.491 kb on - strand, within HER17_RS00355 at 84.622 kb on + strand, within HER17_RS00355 at 84.622 kb on + strand, within HER17_RS00355 at 84.623 kb on - strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.690 kb on - strand, within HER17_RS00355 at 84.690 kb on - strand, within HER17_RS00355 at 84.869 kb on + strand, within HER17_RS00355 at 84.870 kb on - strand, within HER17_RS00355 at 84.925 kb on + strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 85.045 kb on - strand, within HER17_RS00355 at 85.046 kb on + strand, within HER17_RS00355 at 85.046 kb on + strand, within HER17_RS00355 at 85.047 kb on - strand, within HER17_RS00355 at 85.232 kb on - strand, within HER17_RS00355 at 85.238 kb on + strand, within HER17_RS00355 at 85.239 kb on - strand, within HER17_RS00355 at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.500 kb on + strand at 85.500 kb on + strand at 85.500 kb on + strand at 85.501 kb on - strand at 85.519 kb on + strand at 85.563 kb on + strand at 85.563 kb on + strand at 85.563 kb on + strand at 85.564 kb on - strand at 85.592 kb on + strand at 85.592 kb on + strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.595 kb on + strand at 85.595 kb on + strand at 85.596 kb on - strand at 85.596 kb on - strand at 85.617 kb on + strand at 85.617 kb on + strand at 85.617 kb on + strand at 85.618 kb on - strand at 85.618 kb on - strand at 85.704 kb on + strand, within HER17_RS00360 at 85.704 kb on + strand, within HER17_RS00360 at 85.704 kb on + strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.984 kb on - strand, within HER17_RS00360 at 85.984 kb on - strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 86.214 kb on + strand, within HER17_RS00360 at 86.259 kb on + strand, within HER17_RS00360 at 86.260 kb on - strand, within HER17_RS00360 at 86.260 kb on - strand, within HER17_RS00360 at 86.261 kb on + strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 83,311 + +1.2 83,312 - -0.4 83,312 - -0.8 83,312 - -0.2 83,321 + -1.1 83,321 + +0.1 83,322 - -0.8 83,432 - +1.4 83,488 + +0.1 83,489 - -0.0 83,505 + -1.0 83,506 - -1.2 83,509 + +0.2 83,509 + -0.2 83,510 - -0.3 83,578 + +0.2 83,578 + -0.2 83,579 - -0.3 83,579 - +0.1 83,582 + -0.2 83,582 + -0.8 83,583 - +0.7 83,588 + +0.3 83,589 - +0.1 83,600 + +0.9 83,600 + +0.2 83,601 - -0.1 83,601 - -0.3 83,655 - +2.9 83,655 - -0.8 83,726 - +0.6 83,748 + -0.4 83,748 + -0.8 83,749 - +0.4 83,749 - -0.2 83,762 - -0.2 83,813 - +0.7 83,849 + -0.1 83,850 - +0.7 83,932 - +0.3 83,944 + -0.0 83,944 + +0.2 83,945 - -0.9 83,949 - +0.2 83,949 - +0.5 83,966 + -0.7 84,002 + -0.2 84,002 + -0.3 84,003 - -0.3 84,021 + +0.8 84,108 - +1.3 84,133 + +0.1 84,133 + -0.2 84,134 - -0.7 84,145 + +1.5 84,145 + +0.3 84,160 - +0.3 84,419 + HER17_RS00355 0.10 +0.5 84,420 - HER17_RS00355 0.10 -0.5 84,420 - HER17_RS00355 0.10 +1.6 84,491 - HER17_RS00355 0.17 -0.9 84,622 + HER17_RS00355 0.28 +0.1 84,622 + HER17_RS00355 0.28 +0.0 84,623 - HER17_RS00355 0.29 +0.9 84,689 + HER17_RS00355 0.34 -0.4 84,689 + HER17_RS00355 0.34 +1.0 84,689 + HER17_RS00355 0.34 +0.2 84,690 - HER17_RS00355 0.35 +0.4 84,690 - HER17_RS00355 0.35 +0.1 84,869 + HER17_RS00355 0.51 -0.4 84,870 - HER17_RS00355 0.51 +1.0 84,925 + HER17_RS00355 0.56 -1.0 84,926 - HER17_RS00355 0.56 -0.1 84,926 - HER17_RS00355 0.56 -1.2 84,926 - HER17_RS00355 0.56 -0.5 85,045 - HER17_RS00355 0.66 -0.2 85,046 + HER17_RS00355 0.66 -0.8 85,046 + HER17_RS00355 0.66 -0.3 85,047 - HER17_RS00355 0.67 +0.2 85,232 - HER17_RS00355 0.83 -0.1 85,238 + HER17_RS00355 0.84 -0.2 85,239 - HER17_RS00355 0.84 -0.3 85,310 + +0.0 85,310 + -0.7 85,310 + +0.5 85,310 + +1.1 85,310 + -0.1 85,310 + -0.5 85,311 - +0.6 85,311 - +0.0 85,311 - +0.9 85,311 - +0.1 85,311 - +0.3 85,311 - -0.2 85,322 + +0.5 85,322 + +0.4 85,322 + +0.8 85,322 + +0.6 85,500 + +0.2 85,500 + +0.4 85,500 + -0.4 85,501 - -1.4 85,519 + +0.3 85,563 + +0.3 85,563 + +0.5 85,563 + +0.1 85,564 - +0.6 85,592 + -0.2 85,592 + +1.1 85,593 - +0.0 85,593 - -0.1 85,593 - +0.2 85,593 - +1.6 85,595 + +0.5 85,595 + +0.1 85,596 - -0.5 85,596 - +0.9 85,617 + -1.6 85,617 + -0.3 85,617 + +0.6 85,618 - -0.9 85,618 - -0.1 85,704 + HER17_RS00360 0.12 -0.0 85,704 + HER17_RS00360 0.12 +0.5 85,704 + HER17_RS00360 0.12 +0.1 85,705 - HER17_RS00360 0.12 +0.0 85,705 - HER17_RS00360 0.12 +1.0 85,705 - HER17_RS00360 0.12 -0.2 85,705 - HER17_RS00360 0.12 -0.3 85,705 - HER17_RS00360 0.12 -0.1 85,983 + HER17_RS00360 0.24 +0.8 85,983 + HER17_RS00360 0.24 -0.2 85,983 + HER17_RS00360 0.24 -0.2 85,983 + HER17_RS00360 0.24 +0.6 85,984 - HER17_RS00360 0.24 -0.6 85,984 - HER17_RS00360 0.24 +0.0 85,987 + HER17_RS00360 0.24 +1.1 85,987 + HER17_RS00360 0.24 +0.3 85,987 + HER17_RS00360 0.24 +0.4 85,987 + HER17_RS00360 0.24 +0.3 85,987 + HER17_RS00360 0.24 +0.1 85,988 - HER17_RS00360 0.24 +0.7 85,988 - HER17_RS00360 0.24 +0.3 85,988 - HER17_RS00360 0.24 -0.6 85,988 - HER17_RS00360 0.24 +0.1 85,988 - HER17_RS00360 0.24 +0.3 86,214 + HER17_RS00360 0.34 -0.8 86,259 + HER17_RS00360 0.36 +0.2 86,260 - HER17_RS00360 0.36 -0.2 86,260 - HER17_RS00360 0.36 +0.1 86,261 + HER17_RS00360 0.36 +0.9 86,307 - HER17_RS00360 0.38 +0.5 86,307 - HER17_RS00360 0.38 +0.4 86,307 - HER17_RS00360 0.38 +0.5
Or see this region's nucleotide sequence