Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00105 and HER17_RS00110 overlap by 1 nucleotides HER17_RS00110 and HER17_RS00115 overlap by 4 nucleotides HER17_RS00115 and HER17_RS00120 are separated by 39 nucleotides
HER17_RS00105: HER17_RS00105 - nucleoside hydrolase, at 22,306 to 23,295
_RS00105
HER17_RS00110: HER17_RS00110 - ABC transporter permease, at 23,295 to 24,272
_RS00110
HER17_RS00115: HER17_RS00115 - ABC transporter permease, at 24,269 to 25,177
_RS00115
HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022
_RS00120
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.304 kb on + strand at 23.348 kb on + strand at 23.348 kb on + strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.349 kb on - strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.368 kb on + strand at 23.369 kb on - strand at 23.369 kb on - strand at 23.377 kb on - strand at 23.388 kb on - strand at 23.399 kb on + strand, within HER17_RS00110 at 23.534 kb on + strand, within HER17_RS00110 at 23.541 kb on - strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.646 kb on + strand, within HER17_RS00110 at 23.647 kb on - strand, within HER17_RS00110 at 23.712 kb on - strand, within HER17_RS00110 at 23.873 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.949 kb on + strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 23.950 kb on - strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.096 kb on + strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.097 kb on - strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.168 kb on + strand, within HER17_RS00110 at 24.203 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.225 kb on + strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.226 kb on - strand at 24.280 kb on + strand at 24.281 kb on - strand at 24.281 kb on - strand at 24.285 kb on + strand at 24.286 kb on - strand at 24.513 kb on - strand, within HER17_RS00115 at 24.563 kb on + strand, within HER17_RS00115 at 24.644 kb on - strand, within HER17_RS00115 at 24.650 kb on + strand, within HER17_RS00115 at 24.651 kb on - strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.703 kb on + strand, within HER17_RS00115 at 24.704 kb on - strand, within HER17_RS00115 at 24.800 kb on + strand, within HER17_RS00115 at 24.800 kb on + strand, within HER17_RS00115 at 24.801 kb on - strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.803 kb on + strand, within HER17_RS00115 at 24.851 kb on + strand, within HER17_RS00115 at 24.852 kb on - strand, within HER17_RS00115 at 24.907 kb on + strand, within HER17_RS00115 at 24.907 kb on + strand, within HER17_RS00115 at 24.913 kb on - strand, within HER17_RS00115 at 24.963 kb on - strand, within HER17_RS00115 at 25.059 kb on - strand, within HER17_RS00115 at 25.076 kb on + strand, within HER17_RS00115 at 25.175 kb on + strand at 25.200 kb on + strand at 25.201 kb on - strand at 25.231 kb on + strand at 25.231 kb on + strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.232 kb on - strand at 25.462 kb on + strand, within HER17_RS00120 at 25.558 kb on + strand, within HER17_RS00120 at 25.810 kb on - strand, within HER17_RS00120 at 25.810 kb on - strand, within HER17_RS00120 at 25.904 kb on + strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.905 kb on - strand, within HER17_RS00120 at 25.967 kb on + strand, within HER17_RS00120 at 25.967 kb on + strand, within HER17_RS00120 at 25.968 kb on - strand, within HER17_RS00120 at 25.996 kb on + strand, within HER17_RS00120 at 25.997 kb on - strand, within HER17_RS00120 at 26.093 kb on - strand, within HER17_RS00120
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 23,304 + -0.1 23,348 + -0.1 23,348 + +0.4 23,349 - +0.3 23,349 - +1.1 23,349 - -0.6 23,368 + -0.5 23,368 + +0.7 23,368 + +0.1 23,368 + -0.2 23,368 + -0.2 23,369 - +0.6 23,369 - -0.3 23,377 - +0.2 23,388 - -0.3 23,399 + HER17_RS00110 0.11 +0.1 23,534 + HER17_RS00110 0.24 -0.2 23,541 - HER17_RS00110 0.25 +0.6 23,646 + HER17_RS00110 0.36 -0.6 23,646 + HER17_RS00110 0.36 -0.0 23,646 + HER17_RS00110 0.36 +0.5 23,647 - HER17_RS00110 0.36 -0.0 23,712 - HER17_RS00110 0.43 -1.6 23,873 + HER17_RS00110 0.59 -1.4 23,949 + HER17_RS00110 0.67 +0.1 23,949 + HER17_RS00110 0.67 +0.4 23,949 + HER17_RS00110 0.67 -0.8 23,949 + HER17_RS00110 0.67 -0.7 23,949 + HER17_RS00110 0.67 +0.9 23,949 + HER17_RS00110 0.67 -0.6 23,950 - HER17_RS00110 0.67 +1.0 23,950 - HER17_RS00110 0.67 +0.1 23,950 - HER17_RS00110 0.67 -2.6 23,950 - HER17_RS00110 0.67 -0.6 24,096 + HER17_RS00110 0.82 +0.4 24,096 + HER17_RS00110 0.82 -0.0 24,096 + HER17_RS00110 0.82 +0.7 24,096 + HER17_RS00110 0.82 -0.3 24,097 - HER17_RS00110 0.82 +1.2 24,097 - HER17_RS00110 0.82 -0.3 24,168 + HER17_RS00110 0.89 +1.1 24,168 + HER17_RS00110 0.89 +0.6 24,203 + +0.1 24,225 + -0.1 24,225 + -0.4 24,225 + +0.9 24,225 + +0.4 24,225 + +0.4 24,226 - +0.4 24,226 - -0.4 24,226 - +0.9 24,280 + +0.6 24,281 - +0.5 24,281 - +1.0 24,285 + -1.6 24,286 - +0.6 24,513 - HER17_RS00115 0.27 -0.1 24,563 + HER17_RS00115 0.32 +0.6 24,644 - HER17_RS00115 0.41 +1.6 24,650 + HER17_RS00115 0.42 +0.6 24,651 - HER17_RS00115 0.42 -0.2 24,703 + HER17_RS00115 0.48 -0.2 24,703 + HER17_RS00115 0.48 -0.5 24,703 + HER17_RS00115 0.48 +0.1 24,703 + HER17_RS00115 0.48 -0.6 24,703 + HER17_RS00115 0.48 +0.7 24,704 - HER17_RS00115 0.48 -0.0 24,800 + HER17_RS00115 0.58 -1.4 24,800 + HER17_RS00115 0.58 +0.0 24,801 - HER17_RS00115 0.59 +0.4 24,803 + HER17_RS00115 0.59 +0.4 24,803 + HER17_RS00115 0.59 +0.3 24,803 + HER17_RS00115 0.59 +0.2 24,851 + HER17_RS00115 0.64 -0.7 24,852 - HER17_RS00115 0.64 -0.0 24,907 + HER17_RS00115 0.70 -0.5 24,907 + HER17_RS00115 0.70 -0.7 24,913 - HER17_RS00115 0.71 +0.2 24,963 - HER17_RS00115 0.76 +0.4 25,059 - HER17_RS00115 0.87 +0.6 25,076 + HER17_RS00115 0.89 +0.3 25,175 + +0.3 25,200 + +1.0 25,201 - +0.4 25,231 + +0.1 25,231 + -0.4 25,232 - +0.4 25,232 - -0.2 25,232 - -0.1 25,232 - +0.5 25,232 - -1.2 25,462 + HER17_RS00120 0.14 +0.6 25,558 + HER17_RS00120 0.19 +0.0 25,810 - HER17_RS00120 0.33 +0.7 25,810 - HER17_RS00120 0.33 +0.9 25,904 + HER17_RS00120 0.38 -0.6 25,905 - HER17_RS00120 0.38 -0.2 25,905 - HER17_RS00120 0.38 +0.8 25,905 - HER17_RS00120 0.38 +0.0 25,905 - HER17_RS00120 0.38 +0.4 25,905 - HER17_RS00120 0.38 -0.6 25,905 - HER17_RS00120 0.38 -0.3 25,905 - HER17_RS00120 0.38 +0.1 25,905 - HER17_RS00120 0.38 +0.1 25,905 - HER17_RS00120 0.38 +0.3 25,967 + HER17_RS00120 0.42 +0.1 25,967 + HER17_RS00120 0.42 -0.6 25,968 - HER17_RS00120 0.42 -0.1 25,996 + HER17_RS00120 0.43 -0.4 25,997 - HER17_RS00120 0.43 -0.6 26,093 - HER17_RS00120 0.49 +0.9
Or see this region's nucleotide sequence