Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21340 and HER17_RS21345 are separated by 221 nucleotides HER17_RS21345 and HER17_RS21350 are separated by 181 nucleotides
HER17_RS21340: HER17_RS21340 - NAD(P)/FAD-dependent oxidoreductase, at 4,781,126 to 4,782,328
_RS21340
HER17_RS21345: HER17_RS21345 - AraC family transcriptional regulator, at 4,782,550 to 4,783,506
_RS21345
HER17_RS21350: HER17_RS21350 - EAL domain-containing protein, at 4,783,688 to 4,785,292
_RS21350
Position (kb) 4782
4783
4784 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4781.559 kb on + strand, within HER17_RS21340 at 4781.560 kb on - strand, within HER17_RS21340 at 4781.560 kb on - strand, within HER17_RS21340 at 4781.710 kb on + strand, within HER17_RS21340 at 4781.739 kb on + strand, within HER17_RS21340 at 4781.739 kb on + strand, within HER17_RS21340 at 4781.740 kb on - strand, within HER17_RS21340 at 4781.740 kb on - strand, within HER17_RS21340 at 4781.740 kb on - strand, within HER17_RS21340 at 4781.864 kb on + strand, within HER17_RS21340 at 4781.865 kb on - strand, within HER17_RS21340 at 4782.216 kb on - strand at 4782.240 kb on + strand at 4782.240 kb on + strand at 4782.241 kb on - strand at 4782.241 kb on - strand at 4782.260 kb on + strand at 4782.262 kb on + strand at 4782.262 kb on + strand at 4782.263 kb on - strand at 4782.263 kb on - strand at 4782.318 kb on + strand at 4782.329 kb on + strand at 4782.329 kb on + strand at 4782.329 kb on + strand at 4782.329 kb on + strand at 4782.333 kb on + strand at 4782.336 kb on - strand at 4782.336 kb on - strand at 4782.346 kb on + strand at 4782.346 kb on + strand at 4782.374 kb on + strand at 4782.374 kb on + strand at 4782.374 kb on + strand at 4782.410 kb on + strand at 4782.410 kb on + strand at 4782.410 kb on + strand at 4782.410 kb on + strand at 4782.410 kb on + strand at 4782.411 kb on - strand at 4782.411 kb on - strand at 4782.491 kb on + strand at 4782.491 kb on + strand at 4782.491 kb on + strand at 4782.492 kb on - strand at 4782.492 kb on - strand at 4782.522 kb on + strand at 4782.522 kb on + strand at 4782.523 kb on - strand at 4782.523 kb on - strand at 4782.523 kb on - strand at 4782.523 kb on - strand at 4782.527 kb on + strand at 4782.527 kb on + strand at 4782.528 kb on - strand at 4782.528 kb on - strand at 4782.550 kb on - strand at 4782.567 kb on + strand at 4782.567 kb on + strand at 4782.666 kb on + strand, within HER17_RS21345 at 4782.666 kb on + strand, within HER17_RS21345 at 4782.666 kb on + strand, within HER17_RS21345 at 4782.666 kb on + strand, within HER17_RS21345 at 4782.667 kb on - strand, within HER17_RS21345 at 4782.667 kb on - strand, within HER17_RS21345 at 4782.720 kb on + strand, within HER17_RS21345 at 4782.726 kb on + strand, within HER17_RS21345 at 4782.726 kb on + strand, within HER17_RS21345 at 4782.726 kb on + strand, within HER17_RS21345 at 4782.726 kb on + strand, within HER17_RS21345 at 4782.726 kb on + strand, within HER17_RS21345 at 4782.727 kb on - strand, within HER17_RS21345 at 4782.727 kb on - strand, within HER17_RS21345 at 4782.727 kb on - strand, within HER17_RS21345 at 4782.741 kb on + strand, within HER17_RS21345 at 4782.742 kb on - strand, within HER17_RS21345 at 4782.793 kb on + strand, within HER17_RS21345 at 4782.794 kb on - strand, within HER17_RS21345 at 4782.799 kb on + strand, within HER17_RS21345 at 4782.800 kb on - strand, within HER17_RS21345 at 4782.818 kb on + strand, within HER17_RS21345 at 4782.908 kb on + strand, within HER17_RS21345 at 4782.909 kb on - strand, within HER17_RS21345 at 4782.969 kb on + strand, within HER17_RS21345 at 4782.970 kb on - strand, within HER17_RS21345 at 4782.970 kb on - strand, within HER17_RS21345 at 4782.970 kb on - strand, within HER17_RS21345 at 4782.970 kb on - strand, within HER17_RS21345 at 4783.008 kb on - strand, within HER17_RS21345 at 4783.076 kb on + strand, within HER17_RS21345 at 4783.130 kb on + strand, within HER17_RS21345 at 4783.130 kb on + strand, within HER17_RS21345 at 4783.201 kb on + strand, within HER17_RS21345 at 4783.302 kb on - strand, within HER17_RS21345 at 4783.307 kb on - strand, within HER17_RS21345 at 4783.394 kb on - strand, within HER17_RS21345 at 4783.394 kb on - strand, within HER17_RS21345 at 4783.433 kb on + strand at 4783.458 kb on + strand at 4783.496 kb on + strand at 4783.496 kb on + strand at 4783.497 kb on - strand at 4783.497 kb on - strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.509 kb on + strand at 4783.510 kb on - strand at 4783.510 kb on - strand at 4783.541 kb on + strand at 4783.541 kb on + strand at 4783.542 kb on - strand at 4783.559 kb on - strand at 4783.567 kb on + strand at 4783.594 kb on + strand at 4783.594 kb on + strand at 4783.594 kb on + strand at 4783.595 kb on - strand at 4783.600 kb on + strand at 4783.600 kb on + strand at 4783.601 kb on - strand at 4783.601 kb on - strand at 4783.601 kb on - strand at 4783.602 kb on + strand at 4783.602 kb on + strand at 4783.602 kb on + strand at 4783.602 kb on + strand at 4783.603 kb on - strand at 4783.603 kb on - strand at 4783.603 kb on - strand at 4783.603 kb on - strand at 4783.603 kb on - strand at 4783.605 kb on + strand at 4783.654 kb on + strand at 4783.655 kb on - strand at 4783.655 kb on - strand at 4783.655 kb on - strand at 4783.655 kb on - strand at 4783.658 kb on + strand at 4783.658 kb on + strand at 4783.658 kb on + strand at 4783.658 kb on + strand at 4783.658 kb on + strand at 4783.659 kb on - strand at 4783.659 kb on - strand at 4783.711 kb on + strand at 4783.712 kb on - strand at 4783.722 kb on + strand at 4783.722 kb on + strand at 4783.722 kb on + strand at 4783.722 kb on + strand at 4783.723 kb on - strand at 4783.723 kb on - strand at 4783.723 kb on - strand at 4783.732 kb on - strand at 4783.767 kb on + strand at 4783.801 kb on - strand at 4783.801 kb on - strand at 4783.801 kb on - strand at 4783.852 kb on + strand, within HER17_RS21350 at 4783.853 kb on - strand, within HER17_RS21350 at 4783.985 kb on - strand, within HER17_RS21350 at 4783.985 kb on - strand, within HER17_RS21350 at 4783.987 kb on + strand, within HER17_RS21350 at 4783.987 kb on + strand, within HER17_RS21350 at 4783.987 kb on + strand, within HER17_RS21350 at 4783.987 kb on + strand, within HER17_RS21350 at 4783.988 kb on - strand, within HER17_RS21350 at 4783.988 kb on - strand, within HER17_RS21350 at 4783.997 kb on + strand, within HER17_RS21350 at 4783.997 kb on + strand, within HER17_RS21350 at 4783.997 kb on + strand, within HER17_RS21350 at 4783.997 kb on + strand, within HER17_RS21350 at 4783.998 kb on - strand, within HER17_RS21350 at 4783.998 kb on - strand, within HER17_RS21350 at 4784.017 kb on + strand, within HER17_RS21350 at 4784.018 kb on - strand, within HER17_RS21350 at 4784.070 kb on - strand, within HER17_RS21350 at 4784.070 kb on - strand, within HER17_RS21350 at 4784.070 kb on - strand, within HER17_RS21350 at 4784.070 kb on - strand, within HER17_RS21350 at 4784.107 kb on + strand, within HER17_RS21350 at 4784.108 kb on - strand, within HER17_RS21350 at 4784.112 kb on + strand, within HER17_RS21350 at 4784.190 kb on - strand, within HER17_RS21350 at 4784.190 kb on - strand, within HER17_RS21350 at 4784.216 kb on - strand, within HER17_RS21350 at 4784.239 kb on + strand, within HER17_RS21350 at 4784.239 kb on + strand, within HER17_RS21350 at 4784.240 kb on - strand, within HER17_RS21350 at 4784.287 kb on + strand, within HER17_RS21350 at 4784.304 kb on + strand, within HER17_RS21350 at 4784.305 kb on - strand, within HER17_RS21350 at 4784.312 kb on - strand, within HER17_RS21350 at 4784.350 kb on + strand, within HER17_RS21350 at 4784.359 kb on + strand, within HER17_RS21350 at 4784.360 kb on - strand, within HER17_RS21350 at 4784.429 kb on - strand, within HER17_RS21350 at 4784.429 kb on - strand, within HER17_RS21350 at 4784.429 kb on - strand, within HER17_RS21350 at 4784.431 kb on + strand, within HER17_RS21350 at 4784.431 kb on + strand, within HER17_RS21350 at 4784.480 kb on - strand, within HER17_RS21350 at 4784.485 kb on - strand, within HER17_RS21350 at 4784.485 kb on - strand, within HER17_RS21350 at 4784.485 kb on - strand, within HER17_RS21350
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 4,781,559 + HER17_RS21340 0.36 +0.5 4,781,560 - HER17_RS21340 0.36 +0.1 4,781,560 - HER17_RS21340 0.36 +0.1 4,781,710 + HER17_RS21340 0.49 +3.2 4,781,739 + HER17_RS21340 0.51 -0.0 4,781,739 + HER17_RS21340 0.51 -0.2 4,781,740 - HER17_RS21340 0.51 -0.8 4,781,740 - HER17_RS21340 0.51 +0.6 4,781,740 - HER17_RS21340 0.51 -1.9 4,781,864 + HER17_RS21340 0.61 -0.6 4,781,865 - HER17_RS21340 0.61 +0.1 4,782,216 - +0.8 4,782,240 + +0.3 4,782,240 + +0.3 4,782,241 - +0.1 4,782,241 - +0.3 4,782,260 + -0.1 4,782,262 + -0.5 4,782,262 + -0.5 4,782,263 - +0.1 4,782,263 - +0.1 4,782,318 + -0.2 4,782,329 + -2.7 4,782,329 + -0.6 4,782,329 + -0.5 4,782,329 + -0.2 4,782,333 + +0.8 4,782,336 - +0.7 4,782,336 - -0.5 4,782,346 + +0.3 4,782,346 + +0.3 4,782,374 + -0.8 4,782,374 + +0.1 4,782,374 + -2.0 4,782,410 + +0.3 4,782,410 + +0.4 4,782,410 + -0.5 4,782,410 + -0.0 4,782,410 + -0.7 4,782,411 - +0.2 4,782,411 - +0.3 4,782,491 + +0.3 4,782,491 + +0.5 4,782,491 + +0.8 4,782,492 - +1.6 4,782,492 - -0.3 4,782,522 + +0.3 4,782,522 + -0.3 4,782,523 - +0.2 4,782,523 - -0.4 4,782,523 - +0.5 4,782,523 - -0.3 4,782,527 + +0.8 4,782,527 + +0.1 4,782,528 - +0.9 4,782,528 - +0.2 4,782,550 - -0.8 4,782,567 + +0.3 4,782,567 + -0.8 4,782,666 + HER17_RS21345 0.12 +0.1 4,782,666 + HER17_RS21345 0.12 +0.5 4,782,666 + HER17_RS21345 0.12 -0.2 4,782,666 + HER17_RS21345 0.12 +0.3 4,782,667 - HER17_RS21345 0.12 -0.4 4,782,667 - HER17_RS21345 0.12 +1.4 4,782,720 + HER17_RS21345 0.18 -0.2 4,782,726 + HER17_RS21345 0.18 +0.0 4,782,726 + HER17_RS21345 0.18 -1.1 4,782,726 + HER17_RS21345 0.18 -1.2 4,782,726 + HER17_RS21345 0.18 -0.1 4,782,726 + HER17_RS21345 0.18 -0.6 4,782,727 - HER17_RS21345 0.18 -1.2 4,782,727 - HER17_RS21345 0.18 +0.9 4,782,727 - HER17_RS21345 0.18 +0.1 4,782,741 + HER17_RS21345 0.20 +0.7 4,782,742 - HER17_RS21345 0.20 +1.1 4,782,793 + HER17_RS21345 0.25 -0.6 4,782,794 - HER17_RS21345 0.25 +0.9 4,782,799 + HER17_RS21345 0.26 -1.0 4,782,800 - HER17_RS21345 0.26 +0.4 4,782,818 + HER17_RS21345 0.28 +0.1 4,782,908 + HER17_RS21345 0.37 +0.7 4,782,909 - HER17_RS21345 0.38 +0.6 4,782,969 + HER17_RS21345 0.44 -0.2 4,782,970 - HER17_RS21345 0.44 +0.7 4,782,970 - HER17_RS21345 0.44 +0.3 4,782,970 - HER17_RS21345 0.44 +0.1 4,782,970 - HER17_RS21345 0.44 -0.0 4,783,008 - HER17_RS21345 0.48 -0.1 4,783,076 + HER17_RS21345 0.55 -0.6 4,783,130 + HER17_RS21345 0.61 +0.7 4,783,130 + HER17_RS21345 0.61 +0.6 4,783,201 + HER17_RS21345 0.68 -0.4 4,783,302 - HER17_RS21345 0.79 +0.3 4,783,307 - HER17_RS21345 0.79 +0.1 4,783,394 - HER17_RS21345 0.88 +0.1 4,783,394 - HER17_RS21345 0.88 +0.1 4,783,433 + -0.5 4,783,458 + -0.0 4,783,496 + -0.0 4,783,496 + +1.0 4,783,497 - -0.0 4,783,497 - -0.2 4,783,509 + +0.6 4,783,509 + -0.2 4,783,509 + -0.1 4,783,509 + -1.7 4,783,509 + +0.7 4,783,509 + +0.3 4,783,509 + +0.3 4,783,509 + +0.5 4,783,510 - -1.2 4,783,510 - +0.2 4,783,541 + +0.3 4,783,541 + +0.2 4,783,542 - +0.0 4,783,559 - -0.2 4,783,567 + -0.4 4,783,594 + -0.1 4,783,594 + +0.0 4,783,594 + +0.5 4,783,595 - -0.3 4,783,600 + +0.0 4,783,600 + -2.7 4,783,601 - -0.3 4,783,601 - -0.5 4,783,601 - +0.7 4,783,602 + -2.0 4,783,602 + +0.0 4,783,602 + -0.2 4,783,602 + -0.3 4,783,603 - +0.1 4,783,603 - +1.2 4,783,603 - +0.1 4,783,603 - -0.1 4,783,603 - -0.3 4,783,605 + -0.3 4,783,654 + +0.0 4,783,655 - -0.6 4,783,655 - +0.1 4,783,655 - -0.6 4,783,655 - +0.3 4,783,658 + +1.1 4,783,658 + +0.3 4,783,658 + -0.2 4,783,658 + -0.0 4,783,658 + -0.5 4,783,659 - +1.4 4,783,659 - +0.0 4,783,711 + -0.3 4,783,712 - +0.3 4,783,722 + +0.1 4,783,722 + -0.1 4,783,722 + -1.1 4,783,722 + +0.2 4,783,723 - -0.1 4,783,723 - +0.3 4,783,723 - -0.3 4,783,732 - -0.1 4,783,767 + +0.2 4,783,801 - +1.4 4,783,801 - -0.7 4,783,801 - -1.7 4,783,852 + HER17_RS21350 0.10 +0.4 4,783,853 - HER17_RS21350 0.10 +0.7 4,783,985 - HER17_RS21350 0.19 +0.0 4,783,985 - HER17_RS21350 0.19 +0.3 4,783,987 + HER17_RS21350 0.19 -1.0 4,783,987 + HER17_RS21350 0.19 -0.9 4,783,987 + HER17_RS21350 0.19 -0.3 4,783,987 + HER17_RS21350 0.19 +0.3 4,783,988 - HER17_RS21350 0.19 +0.5 4,783,988 - HER17_RS21350 0.19 -0.4 4,783,997 + HER17_RS21350 0.19 -0.6 4,783,997 + HER17_RS21350 0.19 +0.6 4,783,997 + HER17_RS21350 0.19 -0.8 4,783,997 + HER17_RS21350 0.19 -0.6 4,783,998 - HER17_RS21350 0.19 +2.5 4,783,998 - HER17_RS21350 0.19 +0.7 4,784,017 + HER17_RS21350 0.20 +0.8 4,784,018 - HER17_RS21350 0.21 +0.1 4,784,070 - HER17_RS21350 0.24 +0.0 4,784,070 - HER17_RS21350 0.24 -0.6 4,784,070 - HER17_RS21350 0.24 +0.1 4,784,070 - HER17_RS21350 0.24 +1.3 4,784,107 + HER17_RS21350 0.26 +0.3 4,784,108 - HER17_RS21350 0.26 -0.2 4,784,112 + HER17_RS21350 0.26 +0.6 4,784,190 - HER17_RS21350 0.31 +1.8 4,784,190 - HER17_RS21350 0.31 +0.7 4,784,216 - HER17_RS21350 0.33 -0.6 4,784,239 + HER17_RS21350 0.34 -0.9 4,784,239 + HER17_RS21350 0.34 +0.4 4,784,240 - HER17_RS21350 0.34 +0.3 4,784,287 + HER17_RS21350 0.37 +0.4 4,784,304 + HER17_RS21350 0.38 -0.3 4,784,305 - HER17_RS21350 0.38 -0.4 4,784,312 - HER17_RS21350 0.39 +0.8 4,784,350 + HER17_RS21350 0.41 +0.2 4,784,359 + HER17_RS21350 0.42 +0.5 4,784,360 - HER17_RS21350 0.42 +1.0 4,784,429 - HER17_RS21350 0.46 -0.4 4,784,429 - HER17_RS21350 0.46 -2.0 4,784,429 - HER17_RS21350 0.46 +0.2 4,784,431 + HER17_RS21350 0.46 -0.2 4,784,431 + HER17_RS21350 0.46 +0.1 4,784,480 - HER17_RS21350 0.49 +0.2 4,784,485 - HER17_RS21350 0.50 -0.1 4,784,485 - HER17_RS21350 0.50 +0.2 4,784,485 - HER17_RS21350 0.50 +0.6
Or see this region's nucleotide sequence