Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20790

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,658,569	+		HER17_RS20785	0.18	-0.5
4,658,582	-		HER17_RS20785	0.19	+1.1
4,658,719	+		HER17_RS20785	0.32	-0.5
4,658,737	+		HER17_RS20785	0.34	+0.1
4,658,741	-		HER17_RS20785	0.34	+0.7
4,658,958	+		HER17_RS20785	0.54	-0.5
4,658,966	+		HER17_RS20785	0.55	+1.1
4,658,966	+		HER17_RS20785	0.55	-1.5
4,658,970	+		HER17_RS20785	0.55	-0.2
4,658,970	+		HER17_RS20785	0.55	-0.5
4,658,970	+		HER17_RS20785	0.55	+1.1
4,658,970	+		HER17_RS20785	0.55	-0.5
4,658,971	-		HER17_RS20785	0.55	+1.1
4,658,971	-		HER17_RS20785	0.55	-0.8
4,659,064	+		HER17_RS20785	0.64	-1.2
4,659,064	+		HER17_RS20785	0.64	-0.5
4,659,210	+		HER17_RS20785	0.77	-1.6
4,659,235	+		HER17_RS20785	0.79	-0.9
4,659,235	+		HER17_RS20785	0.79	-0.9
4,659,235	+		HER17_RS20785	0.79	-1.1
4,659,235	+		HER17_RS20785	0.79	+0.4
4,659,235	+		HER17_RS20785	0.79	+0.3
4,659,235	+		HER17_RS20785	0.79	+0.4
4,659,236	-		HER17_RS20785	0.80	+0.1
4,659,277	-		HER17_RS20785	0.83	+0.2
4,659,330	+		HER17_RS20785	0.88	-1.3
4,659,331	-		HER17_RS20785	0.88	-0.2
4,659,379	+				+0.3
4,659,379	+				-0.6
4,659,380	-				+1.1
4,659,382	+				+0.1
4,659,382	+				-1.7
4,659,382	+				+0.2
4,659,382	+				-0.1
4,659,382	+				-0.1
4,659,382	+				-0.4
4,659,382	+				+0.3
4,659,385	+				-0.1
4,659,385	+				-0.3
4,659,386	-				+1.1
4,659,461	+				+1.0
4,659,462	-				-0.5
4,659,462	-				-0.9
4,659,462	-				-1.6
4,659,467	+				-0.2
4,659,468	-				-0.9
4,659,468	-				+0.7
4,659,502	+				+0.5
4,659,503	-				-0.6
4,659,518	+				+1.1
4,659,518	+				-0.7
4,659,519	-				-1.2
4,659,617	+				+1.1
4,659,617	+				+0.1
4,659,652	+		HER17_RS20790	0.11	+1.1
4,659,802	-		HER17_RS20790	0.23	+1.1
4,659,816	+		HER17_RS20790	0.24	+0.1
4,659,816	+		HER17_RS20790	0.24	+1.1
4,659,817	-		HER17_RS20790	0.24	-0.5
4,659,899	+		HER17_RS20790	0.30	+2.1
4,659,900	-		HER17_RS20790	0.31	+1.1
4,659,920	-		HER17_RS20790	0.32	-0.9
4,659,920	-		HER17_RS20790	0.32	+1.1
4,659,940	+		HER17_RS20790	0.34	+1.1
4,659,985	+		HER17_RS20790	0.37	+1.1
4,659,986	-		HER17_RS20790	0.37	+2.1
4,659,986	-		HER17_RS20790	0.37	+0.1
4,660,078	+		HER17_RS20790	0.45	+1.1
4,660,078	+		HER17_RS20790	0.45	+1.1
4,660,078	+		HER17_RS20790	0.45	+0.1
4,660,078	+		HER17_RS20790	0.45	+0.1
4,660,078	+		HER17_RS20790	0.45	+1.1
4,660,079	-		HER17_RS20790	0.45	+1.1
4,660,106	+		HER17_RS20790	0.47	+1.1
4,660,107	-		HER17_RS20790	0.47	+1.1
4,660,107	-		HER17_RS20790	0.47	+1.1
4,660,108	+		HER17_RS20790	0.47	+1.1
4,660,115	+		HER17_RS20790	0.48	+0.1
4,660,115	+		HER17_RS20790	0.48	+0.1
4,660,157	+		HER17_RS20790	0.51	+1.7
4,660,208	+		HER17_RS20790	0.55	+0.1
4,660,211	-		HER17_RS20790	0.55	+1.1
4,660,211	-		HER17_RS20790	0.55	+1.1
4,660,275	-		HER17_RS20790	0.61	+1.1
4,660,294	+		HER17_RS20790	0.62	+1.1
4,660,307	-		HER17_RS20790	0.63	+1.1
4,660,329	+		HER17_RS20790	0.65	+1.1
4,660,391	-		HER17_RS20790	0.70	-1.7
4,660,469	+		HER17_RS20790	0.76	+0.1
4,660,470	-		HER17_RS20790	0.76	+1.1
4,660,534	+		HER17_RS20790	0.81	+0.1
4,660,534	+		HER17_RS20790	0.81	-0.9
4,660,534	+		HER17_RS20790	0.81	+1.1
4,660,599	-		HER17_RS20790	0.87	+0.1
4,660,617	+		HER17_RS20790	0.88	+1.1
4,660,618	-		HER17_RS20790	0.88	+1.1
4,660,622	-		HER17_RS20790	0.88	+1.1
4,660,628	+		HER17_RS20790	0.89	+3.1
4,660,629	-		HER17_RS20790	0.89	+1.1
4,660,709	+				-0.1
4,660,709	+				+0.1
4,660,709	+				+0.8
4,660,710	-				-0.6
4,660,710	-				+0.8
4,660,721	-				-0.7
4,660,721	-				+1.1
4,660,721	-				+0.7
4,660,721	-				+0.5
4,660,721	-				+1.1
4,660,721	-				-0.4
4,660,727	+				+0.1
4,660,727	+				-0.5
4,660,727	+				-0.1
4,660,764	+				+0.9
4,660,764	+				+0.1
4,660,764	+				+0.6
4,660,764	+				-0.1
4,660,765	-				-1.6
4,660,765	-				-0.1
4,660,765	-				-0.1
4,660,765	-				-1.3
4,660,765	-				-0.2
4,660,765	-				-0.2
4,660,768	+				-0.1
4,660,768	+				+0.4
4,660,769	-				+1.8
4,660,790	-				-2.3
4,660,790	-				-0.5
4,660,880	+				+0.9
4,660,881	-				-0.8
4,660,881	-				+0.3
4,660,886	+				+0.4
4,660,887	-				-1.9
4,660,900	+				-1.3
4,660,907	+				+0.8
4,660,981	+				+1.9
4,661,010	-		HER17_RS20795	0.13	+0.7
4,661,010	-		HER17_RS20795	0.13	-0.9
4,661,036	+		HER17_RS20795	0.16	-0.9
4,661,036	+		HER17_RS20795	0.16	+0.4
4,661,045	-		HER17_RS20795	0.17	+0.6
4,661,045	-		HER17_RS20795	0.17	+0.9
4,661,076	+		HER17_RS20795	0.21	-0.5
4,661,076	+		HER17_RS20795	0.21	+0.1
4,661,131	-		HER17_RS20795	0.28	+0.1
4,661,131	-		HER17_RS20795	0.28	+0.6
4,661,131	-		HER17_RS20795	0.28	-0.1
4,661,145	+		HER17_RS20795	0.30	-0.4
4,661,148	-		HER17_RS20795	0.31	-0.1
4,661,148	-		HER17_RS20795	0.31	-0.9
4,661,177	+		HER17_RS20795	0.34	-0.9
4,661,213	+		HER17_RS20795	0.39	+0.4
4,661,213	+		HER17_RS20795	0.39	-1.0
4,661,214	-		HER17_RS20795	0.39	-0.2
4,661,245	-		HER17_RS20795	0.43	-0.8
4,661,325	+		HER17_RS20795	0.53	+0.1
4,661,340	+		HER17_RS20795	0.55	-0.4
4,661,347	-		HER17_RS20795	0.56	-1.0
4,661,348	+		HER17_RS20795	0.56	+0.3
4,661,348	+		HER17_RS20795	0.56	-0.9
4,661,348	+		HER17_RS20795	0.56	+0.3
4,661,349	-		HER17_RS20795	0.57	+0.7
4,661,349	-		HER17_RS20795	0.57	-0.1
4,661,349	-		HER17_RS20795	0.57	-0.0
4,661,349	-		HER17_RS20795	0.57	+1.2
4,661,349	-		HER17_RS20795	0.57	-0.7
4,661,380	-		HER17_RS20795	0.61	+0.2
4,661,404	+		HER17_RS20795	0.64	-1.0
4,661,404	+		HER17_RS20795	0.64	-0.8
4,661,404	+		HER17_RS20795	0.64	-0.2
4,661,404	+		HER17_RS20795	0.64	+0.1
4,661,404	+		HER17_RS20795	0.64	-0.6
4,661,405	-		HER17_RS20795	0.64	-1.1
4,661,416	+		HER17_RS20795	0.65	+0.4
4,661,416	+		HER17_RS20795	0.65	+0.8
4,661,417	-		HER17_RS20795	0.65	-0.6
4,661,420	-		HER17_RS20795	0.66	-0.3
4,661,425	+		HER17_RS20795	0.66	-0.1
4,661,426	-		HER17_RS20795	0.67	+0.1
4,661,426	-		HER17_RS20795	0.67	-0.1
4,661,426	-		HER17_RS20795	0.67	+1.7
4,661,464	+		HER17_RS20795	0.71	-0.3
4,661,465	-		HER17_RS20795	0.72	+0.4
4,661,465	-		HER17_RS20795	0.72	-0.2
4,661,465	-		HER17_RS20795	0.72	-0.3
4,661,470	-		HER17_RS20795	0.72	-0.6
4,661,470	-		HER17_RS20795	0.72	-0.5
4,661,470	-		HER17_RS20795	0.72	-0.9
4,661,470	-		HER17_RS20795	0.72	-0.6
4,661,534	+		HER17_RS20795	0.80	-0.0
4,661,540	+		HER17_RS20795	0.81	-0.1
4,661,541	-		HER17_RS20795	0.81	-0.3
4,661,541	-		HER17_RS20795	0.81	-0.2
4,661,557	+		HER17_RS20795	0.83	+0.9
4,661,557	+		HER17_RS20795	0.83	+0.7
4,661,608	+				+0.8
4,661,618	+				-0.1
4,661,619	-				-0.9
4,661,622	-				-0.6
4,661,632	-				+0.4
4,661,642	+				+0.2
4,661,646	+				+1.1
4,661,646	+				+0.5
4,661,647	-				-0.8
4,661,647	-				+1.7
4,661,647	-				-0.1
4,661,647	-				+1.0
4,661,672	+				-1.3
4,661,674	+				+0.1
4,661,674	+				-0.9
4,661,674	+				+0.5
4,661,675	-				+0.4
4,661,675	-				+0.8
4,661,708	+				-0.1
4,661,709	-				+0.6
4,661,709	-				-0.2
4,661,709	-				-0.4
4,661,730	-				-0.6
4,661,731	+				-0.0
4,661,761	+				+0.7
4,661,761	+				-0.9