Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18735

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,210,855	-				-0.1
4,210,861	-				-0.4
4,211,019	+				+0.1
4,211,019	+				+1.0
4,211,020	-				+0.3
4,211,020	-				-0.8
4,211,020	-				+1.7
4,211,021	+				+0.4
4,211,021	+				+0.3
4,211,022	-				-2.2
4,211,056	+				+0.2
4,211,067	+				-0.2
4,211,068	-				+0.4
4,211,075	+				+2.5
4,211,085	+				-0.3
4,211,086	-				+0.4
4,211,134	+				+0.2
4,211,135	-				-0.2
4,211,135	-				+0.5
4,211,135	-				-1.3
4,211,137	+				+0.6
4,211,138	-				+1.0
4,211,138	-				-0.8
4,211,157	-				-0.2
4,211,171	+				-0.0
4,211,200	-				-1.6
4,211,223	-		HER17_RS18730	0.11	+0.5
4,211,233	+		HER17_RS18730	0.12	-0.2
4,211,234	-		HER17_RS18730	0.12	-0.6
4,211,234	-		HER17_RS18730	0.12	+0.5
4,211,237	+		HER17_RS18730	0.13	+0.2
4,211,237	+		HER17_RS18730	0.13	+0.0
4,211,237	+		HER17_RS18730	0.13	-0.3
4,211,237	+		HER17_RS18730	0.13	+0.0
4,211,241	-		HER17_RS18730	0.13	+0.4
4,211,350	+		HER17_RS18730	0.29	+0.2
4,211,358	+		HER17_RS18730	0.31	-0.3
4,211,358	+		HER17_RS18730	0.31	-0.3
4,211,363	+		HER17_RS18730	0.31	+0.4
4,211,364	-		HER17_RS18730	0.31	+0.4
4,211,407	+		HER17_RS18730	0.38	+0.7
4,211,407	+		HER17_RS18730	0.38	-0.0
4,211,407	+		HER17_RS18730	0.38	+0.1
4,211,407	+		HER17_RS18730	0.38	+0.2
4,211,407	+		HER17_RS18730	0.38	+0.5
4,211,407	+		HER17_RS18730	0.38	-0.6
4,211,408	-		HER17_RS18730	0.38	-0.2
4,211,408	-		HER17_RS18730	0.38	+0.6
4,211,408	-		HER17_RS18730	0.38	+0.3
4,211,408	-		HER17_RS18730	0.38	+0.5
4,211,408	-		HER17_RS18730	0.38	+0.4
4,211,409	+		HER17_RS18730	0.38	-0.5
4,211,410	-		HER17_RS18730	0.38	+1.4
4,211,476	+		HER17_RS18730	0.48	+0.2
4,211,476	+		HER17_RS18730	0.48	-0.1
4,211,477	-		HER17_RS18730	0.48	-0.4
4,211,528	+		HER17_RS18730	0.55	+0.0
4,211,528	+		HER17_RS18730	0.55	+0.3
4,211,528	+		HER17_RS18730	0.55	+1.2
4,211,561	+		HER17_RS18730	0.60	+0.7
4,211,562	-		HER17_RS18730	0.60	+1.1
4,211,616	+		HER17_RS18730	0.68	+0.2
4,211,643	-		HER17_RS18730	0.72	+1.1
4,211,643	-		HER17_RS18730	0.72	+1.5
4,211,646	+		HER17_RS18730	0.73	-0.0
4,211,646	+		HER17_RS18730	0.73	-1.4
4,211,646	+		HER17_RS18730	0.73	+0.2
4,211,647	-		HER17_RS18730	0.73	-0.7
4,211,699	-		HER17_RS18730	0.80	-0.1
4,211,788	-				+0.7
4,211,811	+				+0.5
4,211,830	+				+0.6
4,211,830	+				-0.4
4,211,831	-				-0.5
4,211,831	-				+0.3
4,211,851	+				-0.4
4,211,888	-		HER17_RS18735	0.13	+0.3
4,211,960	+		HER17_RS18735	0.32	-0.0
4,211,960	+		HER17_RS18735	0.32	+0.5
4,211,960	+		HER17_RS18735	0.32	+0.3
4,211,960	+		HER17_RS18735	0.32	+0.1
4,211,961	-		HER17_RS18735	0.32	+0.0
4,211,961	-		HER17_RS18735	0.32	+1.4
4,211,961	-		HER17_RS18735	0.32	-0.2
4,211,965	+		HER17_RS18735	0.33	+0.7
4,211,965	+		HER17_RS18735	0.33	+0.9
4,211,966	-		HER17_RS18735	0.33	-1.0
4,211,966	-		HER17_RS18735	0.33	-0.0
4,211,966	-		HER17_RS18735	0.33	+0.5
4,211,966	-		HER17_RS18735	0.33	+0.3
4,212,009	+		HER17_RS18735	0.44	-0.2
4,212,015	+		HER17_RS18735	0.45	-0.4
4,212,016	-		HER17_RS18735	0.46	-0.0
4,212,057	-		HER17_RS18735	0.56	-0.5
4,212,122	+		HER17_RS18735	0.72	-0.1
4,212,123	-		HER17_RS18735	0.73	-0.6
4,212,155	+		HER17_RS18735	0.81	+0.2
4,212,156	-		HER17_RS18735	0.81	-0.1
4,212,235	+				-0.1
4,212,244	-				+0.9
4,212,244	-				-0.3
4,212,259	-				-0.7
4,212,259	-				+0.3
4,212,259	-				+0.4
4,212,259	-				-0.8
4,212,271	+				-0.4
4,212,279	+		HER17_RS18740	0.11	+0.4
4,212,280	-		HER17_RS18740	0.11	+0.0
4,212,280	-		HER17_RS18740	0.11	+0.4
4,212,280	-		HER17_RS18740	0.11	-0.2
4,212,280	-		HER17_RS18740	0.11	-1.4
4,212,382	+		HER17_RS18740	0.36	+0.7
4,212,415	-		HER17_RS18740	0.44	-1.3
4,212,415	-		HER17_RS18740	0.44	-0.3
4,212,649	+				+0.5
4,212,649	+				+0.1
4,212,649	+				-0.1
4,212,649	+				+0.9
4,212,649	+				+0.4
4,212,649	+				-0.3
4,212,650	-				-0.6
4,212,650	-				-0.1
4,212,650	-				+0.2
4,212,650	-				-0.6
4,212,650	-				+0.2
4,212,662	+				+0.1
4,212,776	-				+0.0
4,212,776	-				+0.5
4,212,777	+				+0.3
4,212,777	+				-0.1
4,212,777	+				+0.4
4,212,778	-				-0.1
4,212,778	-				-0.4
4,212,778	-				+0.8
4,212,778	-				+0.0
4,212,781	+				-0.4
4,212,781	+				+1.1
4,212,781	+				-1.2
4,212,781	+				+0.5
4,212,794	+				+0.1
4,212,812	+				+0.1
4,212,812	+				-1.7
4,212,813	-				+0.9
4,212,813	-				+0.2
4,212,840	+				+2.5
4,212,844	+				+0.8
4,212,844	+				+0.4
4,212,845	-				+0.1
4,212,845	-				+0.4
4,212,845	-				+0.8
4,212,886	+		HER17_RS18745	0.23	+0.7
4,212,886	+		HER17_RS18745	0.23	-0.3
4,212,886	+		HER17_RS18745	0.23	-0.1
4,212,887	-		HER17_RS18745	0.23	+0.9
4,212,887	-		HER17_RS18745	0.23	+0.5
4,212,887	-		HER17_RS18745	0.23	+0.6
4,212,889	+		HER17_RS18745	0.24	-0.7
4,212,889	+		HER17_RS18745	0.24	-0.7
4,212,889	+		HER17_RS18745	0.24	-0.1
4,212,890	-		HER17_RS18745	0.24	-0.2
4,212,890	-		HER17_RS18745	0.24	+0.3
4,212,905	+		HER17_RS18745	0.29	+0.9
4,212,905	+		HER17_RS18745	0.29	+0.2
4,212,936	-		HER17_RS18745	0.39	+0.3
4,212,939	-		HER17_RS18745	0.40	+0.4
4,213,038	+		HER17_RS18745	0.73	+2.5
4,213,038	+		HER17_RS18745	0.73	+0.9
4,213,039	-		HER17_RS18745	0.73	+0.0
4,213,043	-		HER17_RS18745	0.74	+1.1
4,213,043	-		HER17_RS18745	0.74	-0.1
4,213,094	-				-0.5
4,213,120	-				+0.4
4,213,120	-				+0.4
4,213,120	-				-0.4
4,213,134	+				-1.1
4,213,135	-				-0.3
4,213,143	+				-0.2
4,213,144	-				-2.7
4,213,144	-				-0.2
4,213,212	+		HER17_RS18750	0.19	-0.1