Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17200

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,871,565	-		HER17_RS17195	0.12	+0.3
3,871,565	-		HER17_RS17195	0.12	+1.2
3,871,596	+		HER17_RS17195	0.16	-0.8
3,871,796	-		HER17_RS17195	0.46	+0.2
3,871,796	-		HER17_RS17195	0.46	-0.6
3,871,821	-		HER17_RS17195	0.49	+0.2
3,871,821	-		HER17_RS17195	0.49	+0.0
3,871,867	+		HER17_RS17195	0.56	-0.7
3,871,873	+		HER17_RS17195	0.57	+0.6
3,871,873	+		HER17_RS17195	0.57	+0.8
3,871,873	+		HER17_RS17195	0.57	-0.1
3,871,873	+		HER17_RS17195	0.57	-0.9
3,871,873	+		HER17_RS17195	0.57	-0.3
3,871,874	-		HER17_RS17195	0.57	-0.5
3,871,874	-		HER17_RS17195	0.57	-0.1
3,871,874	-		HER17_RS17195	0.57	-0.7
3,871,874	-		HER17_RS17195	0.57	+0.1
3,871,874	-		HER17_RS17195	0.57	-0.5
3,871,874	-		HER17_RS17195	0.57	+0.6
3,871,875	+		HER17_RS17195	0.57	+0.3
3,871,875	+		HER17_RS17195	0.57	-0.8
3,871,875	+		HER17_RS17195	0.57	+0.5
3,871,875	+		HER17_RS17195	0.57	+0.2
3,871,875	+		HER17_RS17195	0.57	-1.7
3,871,875	+		HER17_RS17195	0.57	-0.3
3,871,876	-		HER17_RS17195	0.58	-0.7
3,871,876	-		HER17_RS17195	0.58	-0.5
3,871,876	-		HER17_RS17195	0.58	-0.8
3,871,876	-		HER17_RS17195	0.58	-0.1
3,871,876	-		HER17_RS17195	0.58	-0.1
3,871,876	-		HER17_RS17195	0.58	-0.6
3,871,876	-		HER17_RS17195	0.58	+0.4
3,871,939	+		HER17_RS17195	0.67	-0.9
3,871,939	+		HER17_RS17195	0.67	-0.6
3,871,939	+		HER17_RS17195	0.67	+1.0
3,871,939	+		HER17_RS17195	0.67	-0.1
3,871,939	+		HER17_RS17195	0.67	-0.2
3,871,939	+		HER17_RS17195	0.67	-0.1
3,871,940	-		HER17_RS17195	0.67	-1.4
3,871,940	-		HER17_RS17195	0.67	+0.2
3,871,940	-		HER17_RS17195	0.67	-0.5
3,871,940	-		HER17_RS17195	0.67	-0.1
3,872,031	+		HER17_RS17195	0.80	+0.4
3,872,031	+		HER17_RS17195	0.80	-0.5
3,872,032	-		HER17_RS17195	0.80	+1.4
3,872,032	-		HER17_RS17195	0.80	-0.9
3,872,109	+				-0.6
3,872,109	+				-0.1
3,872,135	+				-0.4
3,872,135	+				+0.6
3,872,135	+				-0.2
3,872,136	-				-0.4
3,872,136	-				+0.8
3,872,136	-				-0.2
3,872,153	+				-0.0
3,872,159	-				+0.2
3,872,165	-				+0.6
3,872,188	+				-1.1
3,872,188	+				-0.4
3,872,188	+				+0.4
3,872,189	-				+0.2
3,872,193	+				-0.2
3,872,193	+				-0.1
3,872,193	+				+0.9
3,872,193	+				+0.2
3,872,194	-				+0.1
3,872,194	-				-0.6
3,872,194	-				+0.5
3,872,197	+				-0.0
3,872,198	-				-0.4
3,872,237	+				-1.1
3,872,237	+				-0.3
3,872,237	+				-0.1
3,872,237	+				+0.6
3,872,237	+				+0.0
3,872,237	+				+0.2
3,872,238	-				-0.6
3,872,238	-				+0.5
3,872,238	-				-1.8
3,872,242	+				+0.5
3,872,242	+				-0.6
3,872,243	-				-0.7
3,872,243	-				+0.5
3,872,243	-				+0.3
3,872,243	-				+0.1
3,872,243	-				-0.4
3,872,246	+				+0.3
3,872,246	+				-1.5
3,872,247	-				+0.3
3,872,247	-				-0.4
3,872,247	-				-1.3
3,872,247	-				+0.8
3,872,247	-				+0.0
3,872,248	+				-1.5
3,872,248	+				+0.4
3,872,248	+				-1.6
3,872,248	+				-0.4
3,872,248	+				-0.1
3,872,248	+				-0.6
3,872,248	+				+0.6
3,872,248	+				+0.6
3,872,248	+				+0.9
3,872,248	+				-0.1
3,872,248	+				+0.4
3,872,248	+				+0.5
3,872,248	+				+0.1
3,872,248	+				+0.3
3,872,248	+				-1.6
3,872,248	+				+0.3
3,872,248	+				-0.5
3,872,249	-				-1.1
3,872,249	-				-0.3
3,872,249	-				+0.3
3,872,249	-				+0.9
3,872,249	-				-0.6
3,872,249	-				-0.3
3,872,249	-				-0.3
3,872,249	-				-0.4
3,872,249	-				-0.6
3,872,249	-				+0.1
3,872,249	-				-1.0
3,872,249	-				-0.5
3,872,249	-				-0.2
3,872,249	-				-0.9
3,872,249	-				-0.1
3,872,249	-				-0.6
3,872,249	-				-1.2
3,872,249	-				+0.2
3,872,257	+				-0.8
3,872,258	-				+1.0
3,872,258	-				-1.1
3,872,258	-				+1.0
3,872,278	+				-0.5
3,872,278	+				-0.3
3,872,294	+				+0.6
3,872,299	-				+1.0
3,872,299	-				-0.0
3,872,299	-				-0.1
3,872,357	+				-1.0
3,872,357	+				-0.3
3,872,370	+				-0.1
3,872,374	+				-1.3
3,872,375	-				-0.2
3,872,375	-				-0.5
3,872,397	+				+0.7
3,872,397	+				-1.0
3,872,789	+		HER17_RS17200	0.31	-0.6
3,872,790	-		HER17_RS17200	0.31	+0.1
3,872,798	-		HER17_RS17200	0.32	-1.0
3,872,798	-		HER17_RS17200	0.32	-0.5
3,872,964	+		HER17_RS17200	0.46	+0.7
3,872,965	-		HER17_RS17200	0.46	-0.6
3,873,128	-		HER17_RS17200	0.59	+0.2
3,873,294	+		HER17_RS17200	0.73	-0.0
3,873,294	+		HER17_RS17200	0.73	+0.9
3,873,295	-		HER17_RS17200	0.73	-0.2
3,873,297	+		HER17_RS17200	0.73	+2.8
3,873,297	+		HER17_RS17200	0.73	+0.4
3,873,297	+		HER17_RS17200	0.73	+0.3
3,873,298	-		HER17_RS17200	0.74	+0.6
3,873,363	+		HER17_RS17200	0.79	-0.2
3,873,363	+		HER17_RS17200	0.79	-1.1
3,873,363	+		HER17_RS17200	0.79	+0.5
3,873,363	+		HER17_RS17200	0.79	+0.4
3,873,363	+		HER17_RS17200	0.79	+0.8
3,873,363	+		HER17_RS17200	0.79	-0.6
3,873,363	+		HER17_RS17200	0.79	+0.1
3,873,364	-		HER17_RS17200	0.79	+0.1
3,873,364	-		HER17_RS17200	0.79	-0.2
3,873,364	-		HER17_RS17200	0.79	+0.4
3,873,364	-		HER17_RS17200	0.79	-0.4
3,873,364	-		HER17_RS17200	0.79	-0.3
3,873,364	-		HER17_RS17200	0.79	-0.6
3,873,364	-		HER17_RS17200	0.79	-1.8
3,873,364	-		HER17_RS17200	0.79	+0.3
3,873,365	+		HER17_RS17200	0.79	-0.5
3,873,366	-		HER17_RS17200	0.79	-0.4
3,873,366	-		HER17_RS17200	0.79	+0.2
3,873,438	+		HER17_RS17200	0.85	+0.7
3,873,438	+		HER17_RS17200	0.85	+0.2
3,873,438	+		HER17_RS17200	0.85	+0.6
3,873,439	-		HER17_RS17200	0.85	-0.5
3,873,439	-		HER17_RS17200	0.85	+0.6
3,873,584	+				+0.2
3,873,585	-				+0.5
3,873,612	+				+0.9
3,873,612	+				+0.2
3,873,612	+				+0.8
3,873,612	+				-0.5
3,873,613	-				+0.6
3,873,613	-				-1.2
3,873,613	-				-0.1
3,873,631	+				-0.4
3,873,631	+				-1.3
3,873,632	-				-0.9
3,873,632	-				+0.9
3,873,632	-				+0.4
3,873,635	+				+0.0
3,873,635	+				-0.2
3,873,635	+				+1.2
3,873,636	-				-0.1
3,873,636	-				+0.9
3,873,636	-				-0.3
3,873,636	-				+0.1
3,873,636	-				+0.3
3,873,776	+				-0.0
3,873,777	-				-0.1
3,873,814	-		HER17_RS17205	0.10	-0.0
3,873,814	-		HER17_RS17205	0.10	-0.7
3,873,903	+		HER17_RS17205	0.15	-0.5
3,873,904	-		HER17_RS17205	0.15	-0.4
3,873,957	+		HER17_RS17205	0.17	+0.0
3,873,957	+		HER17_RS17205	0.17	-0.5
3,873,958	-		HER17_RS17205	0.17	+1.0
3,874,003	+		HER17_RS17205	0.20	+0.4
3,874,003	+		HER17_RS17205	0.20	+0.0
3,874,003	+		HER17_RS17205	0.20	-0.1
3,874,003	+		HER17_RS17205	0.20	-1.0
3,874,003	+		HER17_RS17205	0.20	+1.2
3,874,003	+		HER17_RS17205	0.20	+0.7
3,874,004	-		HER17_RS17205	0.20	+0.2
3,874,004	-		HER17_RS17205	0.20	-0.5
3,874,004	-		HER17_RS17205	0.20	+0.1
3,874,004	-		HER17_RS17205	0.20	-0.3
3,874,006	+		HER17_RS17205	0.20	-0.3
3,874,007	-		HER17_RS17205	0.20	-0.9
3,874,015	+		HER17_RS17205	0.20	+0.1
3,874,177	+		HER17_RS17205	0.29	+0.4
3,874,178	-		HER17_RS17205	0.29	+0.1
3,874,178	-		HER17_RS17205	0.29	+1.0
3,874,397	+		HER17_RS17205	0.40	+0.4