Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15870

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,564,675	+				+0.4
3,564,710	+				-0.2
3,564,711	-				+1.5
3,564,730	+				-0.2
3,564,730	+				+0.9
3,564,730	+				+0.2
3,564,731	-				+0.2
3,564,731	-				+0.1
3,564,736	+				-0.8
3,564,804	+				-0.9
3,564,804	+				+0.8
3,564,804	+				-0.1
3,564,804	+				+0.2
3,564,805	-				-0.2
3,564,805	-				-1.1
3,564,805	-				-1.0
3,564,805	-				+0.4
3,564,806	+				+1.3
3,564,829	+				-0.0
3,564,830	-				-1.7
3,564,883	+				+0.2
3,564,883	+				-0.1
3,564,884	-				-1.3
3,564,884	-				-0.1
3,564,921	+				+0.0
3,564,921	+				+0.0
3,564,921	+				-1.3
3,564,921	+				-0.3
3,564,921	+				+0.7
3,564,922	-				+0.3
3,564,922	-				-0.8
3,564,926	+				+0.7
3,564,926	+				+0.9
3,564,935	+				+0.0
3,564,935	+				-0.2
3,564,935	+				+1.2
3,564,936	-				-0.2
3,564,936	-				+0.0
3,564,956	-				-0.5
3,564,974	-				+0.8
3,564,974	-				+0.1
3,565,112	+		HER17_RS15865	0.23	+0.4
3,565,113	-		HER17_RS15865	0.23	+0.9
3,565,115	+		HER17_RS15865	0.24	+0.3
3,565,115	+		HER17_RS15865	0.24	-0.3
3,565,116	-		HER17_RS15865	0.24	+0.6
3,565,116	-		HER17_RS15865	0.24	+0.3
3,565,254	+		HER17_RS15865	0.48	+0.1
3,565,254	+		HER17_RS15865	0.48	+0.8
3,565,254	+		HER17_RS15865	0.48	+0.3
3,565,394	+		HER17_RS15865	0.72	+0.3
3,565,410	+		HER17_RS15865	0.75	+0.4
3,565,411	-		HER17_RS15865	0.75	+0.2
3,565,422	+		HER17_RS15865	0.77	-0.4
3,565,422	+		HER17_RS15865	0.77	-0.0
3,565,422	+		HER17_RS15865	0.77	+0.2
3,565,422	+		HER17_RS15865	0.77	-1.2
3,565,423	-		HER17_RS15865	0.77	-0.1
3,565,463	+		HER17_RS15865	0.84	+0.0
3,565,525	+				+0.3
3,565,525	+				+0.0
3,565,525	+				-0.1
3,565,526	-				+0.7
3,565,529	+				-0.2
3,565,529	+				-0.1
3,565,529	+				+0.7
3,565,530	-				-0.2
3,565,530	-				-1.1
3,565,621	+				+0.1
3,565,622	-				+1.3
3,565,651	+				+0.5
3,565,652	-				-0.1
3,565,652	-				-2.1
3,565,652	-				+0.5
3,565,663	+				+0.6
3,565,663	+				+0.2
3,565,664	-				-0.1
3,565,664	-				+0.4
3,565,664	-				+0.3
3,565,692	+				+0.2
3,565,790	+		HER17_RS15870	0.12	-0.2
3,565,794	+		HER17_RS15870	0.12	+0.7
3,565,794	+		HER17_RS15870	0.12	-1.1
3,565,794	+		HER17_RS15870	0.12	+0.8
3,565,794	+		HER17_RS15870	0.12	+1.2
3,565,794	+		HER17_RS15870	0.12	+1.9
3,565,795	-		HER17_RS15870	0.12	+0.7
3,565,795	-		HER17_RS15870	0.12	+0.2
3,565,916	-		HER17_RS15870	0.20	-0.1
3,565,916	-		HER17_RS15870	0.20	+0.6
3,566,006	+		HER17_RS15870	0.26	+0.8
3,566,007	-		HER17_RS15870	0.26	+1.1
3,566,007	-		HER17_RS15870	0.26	-0.9
3,566,007	-		HER17_RS15870	0.26	-0.1
3,566,007	-		HER17_RS15870	0.26	+0.8
3,566,009	-		HER17_RS15870	0.26	+0.1
3,566,064	+		HER17_RS15870	0.30	+0.1
3,566,064	+		HER17_RS15870	0.30	-1.0
3,566,064	+		HER17_RS15870	0.30	+0.2
3,566,065	-		HER17_RS15870	0.30	+0.3
3,566,065	-		HER17_RS15870	0.30	-0.4
3,566,065	-		HER17_RS15870	0.30	-0.4
3,566,065	-		HER17_RS15870	0.30	-0.1
3,566,065	-		HER17_RS15870	0.30	+0.5
3,566,123	+		HER17_RS15870	0.34	+0.4
3,566,144	+		HER17_RS15870	0.35	+0.5
3,566,144	+		HER17_RS15870	0.35	-0.6
3,566,144	+		HER17_RS15870	0.35	-0.1
3,566,144	+		HER17_RS15870	0.35	+0.2
3,566,145	-		HER17_RS15870	0.36	-0.5
3,566,194	-		HER17_RS15870	0.39	-0.8
3,566,306	-		HER17_RS15870	0.46	+0.9
3,566,315	+		HER17_RS15870	0.47	+0.1
3,566,315	+		HER17_RS15870	0.47	+0.4
3,566,315	+		HER17_RS15870	0.47	+0.1
3,566,315	+		HER17_RS15870	0.47	+1.8
3,566,315	+		HER17_RS15870	0.47	-0.7
3,566,315	+		HER17_RS15870	0.47	+0.8
3,566,315	+		HER17_RS15870	0.47	+0.2
3,566,316	-		HER17_RS15870	0.47	-0.3
3,566,316	-		HER17_RS15870	0.47	+0.7
3,566,316	-		HER17_RS15870	0.47	+1.2
3,566,407	+		HER17_RS15870	0.53	+0.1
3,566,407	+		HER17_RS15870	0.53	+0.1
3,566,408	-		HER17_RS15870	0.53	-0.2
3,566,408	-		HER17_RS15870	0.53	+0.2
3,566,635	-		HER17_RS15870	0.68	-0.1
3,566,635	-		HER17_RS15870	0.68	+0.6
3,566,654	-		HER17_RS15870	0.70	+1.9
3,566,654	-		HER17_RS15870	0.70	-0.1
3,566,654	-		HER17_RS15870	0.70	+0.4
3,566,714	+		HER17_RS15870	0.74	-0.4
3,566,714	+		HER17_RS15870	0.74	+0.8
3,566,714	+		HER17_RS15870	0.74	-0.0
3,566,750	+		HER17_RS15870	0.76	+0.2
3,566,751	-		HER17_RS15870	0.76	+0.8
3,566,982	+				+1.0
3,566,983	-				+2.5
3,566,983	-				+0.1
3,566,983	-				-0.6
3,566,999	+				-0.6
3,567,000	-				-0.5
3,567,097	-				-0.8
3,567,106	-				+0.0
3,567,108	+				-0.1
3,567,108	+				-0.1
3,567,145	-				-0.8
3,567,148	-				+0.1
3,567,161	-				-0.3
3,567,164	+				-2.1
3,567,165	-				+0.2
3,567,168	+				-1.5
3,567,182	+				-0.1
3,567,182	+				+0.1
3,567,183	-				+0.5
3,567,202	+				+0.5
3,567,212	+				-0.3
3,567,213	-				-0.5
3,567,292	+				+0.5
3,567,311	+				-0.5
3,567,312	-				+0.7
3,567,322	+				+0.5
3,567,339	-				-1.0
3,567,382	-				-0.0
3,567,436	+				+0.1
3,567,443	-				-0.7
3,567,502	-				+1.1
3,567,502	-				+0.9
3,567,514	-				-0.3
3,567,544	-				-0.8
3,567,549	-				-0.5
3,567,716	-		HER17_RS15875	0.20	-1.3
3,567,790	+		HER17_RS15875	0.27	-0.5
3,567,790	+		HER17_RS15875	0.27	-0.9
3,567,790	+		HER17_RS15875	0.27	-0.5
3,567,800	-		HER17_RS15875	0.28	+1.3
3,567,819	-		HER17_RS15875	0.30	+0.5
3,567,845	+		HER17_RS15875	0.33	-1.2
3,567,846	-		HER17_RS15875	0.33	+0.1
3,568,003	+		HER17_RS15875	0.49	-1.1
3,568,004	-		HER17_RS15875	0.49	-1.5
3,568,022	+		HER17_RS15875	0.51	-0.7
3,568,078	-		HER17_RS15875	0.57	-0.1