Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15350

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,440,657	-		HER17_RS15345	0.65	+0.4
3,440,657	-		HER17_RS15345	0.65	+0.3
3,440,699	-		HER17_RS15345	0.66	-0.1
3,440,719	-		HER17_RS15345	0.67	+0.5
3,440,730	-		HER17_RS15345	0.68	+0.8
3,440,912	+		HER17_RS15345	0.74	+0.9
3,440,998	+		HER17_RS15345	0.77	-2.1
3,440,999	-		HER17_RS15345	0.78	+0.0
3,441,001	+		HER17_RS15345	0.78	+1.1
3,441,001	+		HER17_RS15345	0.78	+0.5
3,441,002	-		HER17_RS15345	0.78	+0.6
3,441,002	-		HER17_RS15345	0.78	+0.8
3,441,002	-		HER17_RS15345	0.78	+1.6
3,441,002	-		HER17_RS15345	0.78	-0.6
3,441,002	-		HER17_RS15345	0.78	+0.2
3,441,005	+		HER17_RS15345	0.78	-0.2
3,441,053	+		HER17_RS15345	0.80	+0.6
3,441,053	+		HER17_RS15345	0.80	+0.2
3,441,080	-		HER17_RS15345	0.81	-1.1
3,441,168	+		HER17_RS15345	0.84	+2.8
3,441,215	-		HER17_RS15345	0.85	-0.1
3,441,242	+		HER17_RS15345	0.86	+1.0
3,441,253	+		HER17_RS15345	0.87	+0.4
3,441,286	+		HER17_RS15345	0.88	+0.8
3,441,286	+		HER17_RS15345	0.88	+0.7
3,441,287	-		HER17_RS15345	0.88	+0.2
3,441,287	-		HER17_RS15345	0.88	-0.7
3,441,308	+		HER17_RS15345	0.89	+0.5
3,441,309	-		HER17_RS15345	0.89	+0.5
3,441,310	+		HER17_RS15345	0.89	-0.8
3,441,310	+		HER17_RS15345	0.89	+1.1
3,441,310	+		HER17_RS15345	0.89	-0.7
3,441,311	-		HER17_RS15345	0.89	+1.3
3,441,311	-		HER17_RS15345	0.89	+0.6
3,441,311	-		HER17_RS15345	0.89	-0.2
3,441,311	-		HER17_RS15345	0.89	+0.8
3,441,402	+				+0.2
3,441,402	+				+0.3
3,441,403	-				+0.6
3,441,454	+				+0.4
3,441,454	+				+0.5
3,441,454	+				+1.5
3,441,510	-				+0.5
3,441,536	+				-0.0
3,441,537	-				-0.2
3,441,545	+				-0.6
3,441,593	+				-0.1
3,441,593	+				+0.2
3,441,594	-				-1.4
3,441,612	+				-0.2
3,441,612	+				-0.9
3,441,612	+				+0.5
3,441,612	+				-0.3
3,441,613	-				+0.3
3,441,613	-				+0.0
3,441,613	-				+0.1
3,441,761	+				-0.9
3,441,761	+				-1.1
3,441,762	-				+1.8
3,441,801	-				+0.0
3,441,838	+		HER17_RS15350	0.11	-0.4
3,441,838	+		HER17_RS15350	0.11	-0.5
3,442,024	-		HER17_RS15350	0.21	+0.1
3,442,176	+		HER17_RS15350	0.30	-0.6
3,442,177	-		HER17_RS15350	0.30	+1.4
3,442,269	+		HER17_RS15350	0.35	+0.6
3,442,269	+		HER17_RS15350	0.35	+0.8
3,442,309	-		HER17_RS15350	0.37	-0.2
3,442,356	-		HER17_RS15350	0.40	+0.3
3,442,379	+		HER17_RS15350	0.41	-0.1
3,442,380	-		HER17_RS15350	0.41	-0.4
3,442,405	-		HER17_RS15350	0.43	-0.7
3,442,444	+		HER17_RS15350	0.45	+0.5
3,442,460	-		HER17_RS15350	0.46	+0.9
3,442,583	+		HER17_RS15350	0.53	-0.0
3,442,584	-		HER17_RS15350	0.53	-0.2
3,442,700	-		HER17_RS15350	0.59	+0.5
3,442,700	-		HER17_RS15350	0.59	-0.5
3,442,728	+		HER17_RS15350	0.61	-0.5
3,442,728	+		HER17_RS15350	0.61	-0.1
3,442,729	-		HER17_RS15350	0.61	-0.1
3,442,729	-		HER17_RS15350	0.61	+0.3
3,442,800	-		HER17_RS15350	0.65	-1.1
3,442,834	+		HER17_RS15350	0.67	-0.2
3,442,841	+		HER17_RS15350	0.67	-1.8
3,442,843	+		HER17_RS15350	0.67	+0.2
3,442,843	+		HER17_RS15350	0.67	-0.4
3,442,844	-		HER17_RS15350	0.67	-0.3
3,442,844	-		HER17_RS15350	0.67	-0.1
3,442,844	-		HER17_RS15350	0.67	+1.0
3,442,852	+		HER17_RS15350	0.68	+0.6
3,442,852	+		HER17_RS15350	0.68	+0.8
3,442,852	+		HER17_RS15350	0.68	+0.3
3,442,853	-		HER17_RS15350	0.68	+0.4
3,442,853	-		HER17_RS15350	0.68	+1.3
3,442,853	-		HER17_RS15350	0.68	-0.3
3,442,860	-		HER17_RS15350	0.68	+0.1
3,442,861	+		HER17_RS15350	0.68	+0.8
3,442,861	+		HER17_RS15350	0.68	-0.4
3,442,862	-		HER17_RS15350	0.68	-0.9
3,442,936	+		HER17_RS15350	0.73	-0.5
3,442,937	-		HER17_RS15350	0.73	-0.2
3,442,937	-		HER17_RS15350	0.73	-0.1
3,442,964	+		HER17_RS15350	0.74	-0.0
3,442,964	+		HER17_RS15350	0.74	-0.5
3,442,964	+		HER17_RS15350	0.74	-0.1
3,442,964	+		HER17_RS15350	0.74	+0.2
3,443,007	-		HER17_RS15350	0.77	-1.2
3,443,021	+		HER17_RS15350	0.77	+1.4
3,443,022	-		HER17_RS15350	0.77	-0.9
3,443,058	+		HER17_RS15350	0.79	-1.1
3,443,058	+		HER17_RS15350	0.79	+0.6
3,443,058	+		HER17_RS15350	0.79	-0.4
3,443,059	-		HER17_RS15350	0.80	-0.1
3,443,059	-		HER17_RS15350	0.80	+0.2
3,443,065	+		HER17_RS15350	0.80	-0.1
3,443,065	+		HER17_RS15350	0.80	+0.7
3,443,066	-		HER17_RS15350	0.80	+0.6
3,443,068	+		HER17_RS15350	0.80	+0.0
3,443,068	+		HER17_RS15350	0.80	-0.0
3,443,069	-		HER17_RS15350	0.80	-0.1
3,443,098	+		HER17_RS15350	0.82	+0.9
3,443,098	+		HER17_RS15350	0.82	+0.3
3,443,098	+		HER17_RS15350	0.82	+0.1
3,443,098	+		HER17_RS15350	0.82	+0.1
3,443,099	-		HER17_RS15350	0.82	-0.2
3,443,117	+		HER17_RS15350	0.83	-1.2
3,443,152	-		HER17_RS15350	0.85	-0.1
3,443,157	+		HER17_RS15350	0.85	+0.1
3,443,158	-		HER17_RS15350	0.85	-1.7
3,443,205	-		HER17_RS15350	0.88	+1.5
3,443,218	-		HER17_RS15350	0.88	+0.0
3,443,267	+				-0.7
3,443,268	-				-0.1
3,443,268	-				+0.0
3,443,268	-				-0.2
3,443,290	+				+1.0
3,443,313	-				+1.3
3,443,313	-				-0.1
3,443,315	+				-1.1
3,443,315	+				-0.0
3,443,315	+				-0.4
3,443,316	-				-0.1
3,443,316	-				+0.1
3,443,316	-				-1.1
3,443,330	+				+0.3
3,443,365	+				+1.2
3,443,403	-				+0.5
3,443,508	+				-0.7
3,443,508	+				+0.4
3,443,553	+				+0.4
3,443,553	+				-0.2
3,443,553	+				+0.3
3,443,554	-				+0.7
3,443,554	-				-0.1
3,443,554	-				+0.5
3,443,554	-				-0.6
3,443,554	-				+0.1
3,443,574	+				+0.5
3,443,575	-				+0.9
3,443,575	-				+0.3
3,443,575	-				-0.4
3,443,575	-				-1.1
3,443,577	+				+0.4
3,443,577	+				+0.6
3,443,577	+				+1.0
3,443,577	+				-0.2
3,443,577	+				+0.4
3,443,577	+				+0.1
3,443,577	+				-0.5
3,443,577	+				-0.1
3,443,578	-				-0.3
3,443,578	-				-0.5
3,443,578	-				-0.5
3,443,578	-				+0.5
3,443,578	-				+0.5
3,443,581	+				-0.2
3,443,599	+				-0.1
3,443,600	-				+0.3
3,443,638	-				+1.0
3,443,772	+		HER17_RS15355	0.12	-0.3
3,443,773	-		HER17_RS15355	0.12	+0.0
3,443,828	-		HER17_RS15355	0.14	-1.1
3,443,837	-		HER17_RS15355	0.14	-0.8
3,443,837	-		HER17_RS15355	0.14	+0.5
3,443,848	-		HER17_RS15355	0.15	-0.3
3,443,848	-		HER17_RS15355	0.15	+1.2
3,443,851	+		HER17_RS15355	0.15	-0.9
3,443,851	+		HER17_RS15355	0.15	+0.2
3,443,851	+		HER17_RS15355	0.15	+0.8
3,443,851	+		HER17_RS15355	0.15	-0.4
3,443,852	-		HER17_RS15355	0.15	+0.3
3,443,852	-		HER17_RS15355	0.15	+0.5
3,443,852	-		HER17_RS15355	0.15	+0.3
3,443,852	-		HER17_RS15355	0.15	-0.0
3,443,852	-		HER17_RS15355	0.15	-0.3
3,443,853	+		HER17_RS15355	0.15	+0.6
3,443,853	+		HER17_RS15355	0.15	-0.6
3,443,853	+		HER17_RS15355	0.15	+0.8
3,443,853	+		HER17_RS15355	0.15	-0.0
3,443,854	-		HER17_RS15355	0.15	-0.3
3,443,854	-		HER17_RS15355	0.15	-0.0
3,443,854	-		HER17_RS15355	0.15	+0.5
3,443,854	-		HER17_RS15355	0.15	-0.9
3,443,950	+		HER17_RS15355	0.19	+0.4
3,443,950	+		HER17_RS15355	0.19	-0.5
3,443,950	+		HER17_RS15355	0.19	-1.1
3,443,950	+		HER17_RS15355	0.19	+0.1
3,443,950	+		HER17_RS15355	0.19	-0.3
3,443,951	-		HER17_RS15355	0.19	-1.4
3,443,954	-		HER17_RS15355	0.19	-0.0
3,443,990	+		HER17_RS15355	0.21	+0.1
3,444,049	+		HER17_RS15355	0.23	-0.5
3,444,050	-		HER17_RS15355	0.23	-0.1
3,444,115	+		HER17_RS15355	0.26	+0.6
3,444,115	+		HER17_RS15355	0.26	-1.8
3,444,116	-		HER17_RS15355	0.26	+0.8
3,444,171	+		HER17_RS15355	0.29	+0.4
3,444,172	-		HER17_RS15355	0.29	-0.1
3,444,198	+		HER17_RS15355	0.30	+0.0
3,444,199	-		HER17_RS15355	0.30	-0.3
3,444,199	-		HER17_RS15355	0.30	+0.2
3,444,225	+		HER17_RS15355	0.31	+0.1
3,444,225	+		HER17_RS15355	0.31	+0.5
3,444,225	+		HER17_RS15355	0.31	+0.9
3,444,225	+		HER17_RS15355	0.31	+0.3
3,444,225	+		HER17_RS15355	0.31	-0.2
3,444,225	+		HER17_RS15355	0.31	-0.1
3,444,226	-		HER17_RS15355	0.31	+2.1
3,444,226	-		HER17_RS15355	0.31	+0.3
3,444,331	+		HER17_RS15355	0.35	-0.0
3,444,332	-		HER17_RS15355	0.35	-0.2
3,444,332	-		HER17_RS15355	0.35	-1.4
3,444,332	-		HER17_RS15355	0.35	-1.0
3,444,332	-		HER17_RS15355	0.35	+0.4
3,444,332	-		HER17_RS15355	0.35	-0.2
3,444,333	+		HER17_RS15355	0.35	-2.3
3,444,333	+		HER17_RS15355	0.35	-1.0
3,444,333	+		HER17_RS15355	0.35	+0.1
3,444,333	+		HER17_RS15355	0.35	+0.2
3,444,334	-		HER17_RS15355	0.35	-0.2
3,444,334	-		HER17_RS15355	0.35	+1.8
3,444,334	-		HER17_RS15355	0.35	+0.2
3,444,334	-		HER17_RS15355	0.35	-0.2
3,444,334	-		HER17_RS15355	0.35	-0.8
3,444,371	+		HER17_RS15355	0.37	-2.0
3,444,372	-		HER17_RS15355	0.37	+0.5
3,444,372	-		HER17_RS15355	0.37	-0.8
3,444,387	+		HER17_RS15355	0.38	-1.3
3,444,387	+		HER17_RS15355	0.38	+0.8
3,444,387	+		HER17_RS15355	0.38	-0.4
3,444,388	-		HER17_RS15355	0.38	-0.2
3,444,388	-		HER17_RS15355	0.38	+0.2