Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05370

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,186,292	+		HER17_RS05360	0.65	+0.3
1,186,314	+		HER17_RS05360	0.68	+0.5
1,186,315	-		HER17_RS05360	0.68	-0.5
1,186,336	+		HER17_RS05360	0.70	+0.1
1,186,336	+		HER17_RS05360	0.70	+1.9
1,186,341	+		HER17_RS05360	0.71	+0.1
1,186,342	-		HER17_RS05360	0.71	-0.5
1,186,369	+		HER17_RS05360	0.74	+1.2
1,186,388	+		HER17_RS05360	0.76	+0.5
1,186,388	+		HER17_RS05360	0.76	+0.7
1,186,389	-		HER17_RS05360	0.76	-0.5
1,186,552	+				-0.1
1,186,560	-				+0.6
1,186,577	-				+0.2
1,186,581	-				+0.8
1,186,581	-				+0.3
1,186,592	-				+0.5
1,186,592	-				+0.2
1,186,592	-				+0.2
1,186,615	+				+0.2
1,186,616	-				-0.0
1,186,631	+				+0.4
1,186,651	-				+0.1
1,186,664	-				-0.2
1,186,674	+				+0.9
1,186,706	-				-0.0
1,186,708	+				+0.8
1,186,713	+				-0.3
1,186,713	+				+0.4
1,186,713	+				+0.2
1,186,714	-				+0.1
1,186,714	-				+0.3
1,186,722	+				+1.1
1,186,726	+				+0.1
1,186,741	+				-1.0
1,186,741	+				+1.1
1,186,742	-				+0.2
1,186,742	-				-0.0
1,186,753	-				+0.0
1,186,764	-				+0.4
1,186,848	-				+1.2
1,186,863	-				+0.5
1,186,982	+		HER17_RS05365	0.30	+1.0
1,186,982	+		HER17_RS05365	0.30	+0.3
1,186,983	-		HER17_RS05365	0.30	+0.2
1,186,983	-		HER17_RS05365	0.30	+1.5
1,186,989	-		HER17_RS05365	0.32	-0.1
1,187,018	-		HER17_RS05365	0.40	+0.1
1,187,025	+		HER17_RS05365	0.42	-0.9
1,187,025	+		HER17_RS05365	0.42	-0.2
1,187,025	+		HER17_RS05365	0.42	+1.1
1,187,025	+		HER17_RS05365	0.42	-0.1
1,187,026	-		HER17_RS05365	0.43	+0.1
1,187,026	-		HER17_RS05365	0.43	-0.9
1,187,026	-		HER17_RS05365	0.43	+0.0
1,187,054	+		HER17_RS05365	0.51	-0.3
1,187,054	+		HER17_RS05365	0.51	+0.4
1,187,088	+		HER17_RS05365	0.60	+0.5
1,187,089	-		HER17_RS05365	0.61	-0.1
1,187,190	+		HER17_RS05365	0.90	-0.1
1,187,199	+				-0.5
1,187,212	+				-0.8
1,187,212	+				-0.9
1,187,212	+				+0.2
1,187,212	+				+0.7
1,187,213	-				+0.4
1,187,213	-				-0.3
1,187,218	+				+0.1
1,187,218	+				+0.4
1,187,219	-				-0.5
1,187,219	-				-0.3
1,187,219	-				-0.9
1,187,309	+				-0.0
1,187,351	-		HER17_RS05370	0.11	+1.5
1,187,351	-		HER17_RS05370	0.11	-0.5
1,187,351	-		HER17_RS05370	0.11	-0.0
1,187,409	+		HER17_RS05370	0.19	+0.9
1,187,409	+		HER17_RS05370	0.19	+0.1
1,187,409	+		HER17_RS05370	0.19	-1.0
1,187,409	+		HER17_RS05370	0.19	+0.7
1,187,410	-		HER17_RS05370	0.19	+0.5
1,187,410	-		HER17_RS05370	0.19	+0.6
1,187,410	-		HER17_RS05370	0.19	+0.0
1,187,410	-		HER17_RS05370	0.19	+1.0
1,187,410	-		HER17_RS05370	0.19	+0.5
1,187,411	+		HER17_RS05370	0.19	-0.1
1,187,411	+		HER17_RS05370	0.19	-0.2
1,187,411	+		HER17_RS05370	0.19	+0.0
1,187,411	+		HER17_RS05370	0.19	-1.0
1,187,412	-		HER17_RS05370	0.20	-0.2
1,187,412	-		HER17_RS05370	0.20	-0.4
1,187,412	-		HER17_RS05370	0.20	+0.0
1,187,412	-		HER17_RS05370	0.20	-0.9
1,187,412	-		HER17_RS05370	0.20	-0.5
1,187,475	-		HER17_RS05370	0.28	-0.5
1,187,574	+		HER17_RS05370	0.42	+0.1
1,187,614	+		HER17_RS05370	0.48	-1.2
1,187,654	-		HER17_RS05370	0.53	+0.4
1,187,689	-		HER17_RS05370	0.58	-0.3
1,187,693	-		HER17_RS05370	0.59	-0.2
1,187,693	-		HER17_RS05370	0.59	+0.5
1,187,696	+		HER17_RS05370	0.59	-0.4
1,187,696	+		HER17_RS05370	0.59	+0.9
1,187,741	+		HER17_RS05370	0.65	+0.1
1,187,741	+		HER17_RS05370	0.65	+0.2
1,187,741	+		HER17_RS05370	0.65	-0.2
1,187,742	-		HER17_RS05370	0.66	+0.3
1,187,742	-		HER17_RS05370	0.66	+0.6
1,187,742	-		HER17_RS05370	0.66	-0.9
1,187,762	+		HER17_RS05370	0.68	-0.4
1,187,762	+		HER17_RS05370	0.68	+0.6
1,187,762	+		HER17_RS05370	0.68	-0.3
1,187,762	+		HER17_RS05370	0.68	-1.5
1,187,763	-		HER17_RS05370	0.68	+0.5
1,187,763	-		HER17_RS05370	0.68	+0.1
1,187,769	+		HER17_RS05370	0.69	-0.0
1,187,801	-		HER17_RS05370	0.74	+1.0
1,187,801	-		HER17_RS05370	0.74	+0.8
1,187,824	+		HER17_RS05370	0.77	-0.8
1,187,824	+		HER17_RS05370	0.77	-1.3
1,187,824	+		HER17_RS05370	0.77	+0.1
1,187,824	+		HER17_RS05370	0.77	+1.4
1,187,824	+		HER17_RS05370	0.77	-0.6
1,187,825	-		HER17_RS05370	0.77	+0.0
1,187,825	-		HER17_RS05370	0.77	+0.1
1,187,825	-		HER17_RS05370	0.77	-0.5
1,187,825	-		HER17_RS05370	0.77	+0.3
1,187,825	-		HER17_RS05370	0.77	+0.4
1,187,825	-		HER17_RS05370	0.77	-0.3
1,187,826	+		HER17_RS05370	0.77	+1.0
1,187,863	-		HER17_RS05370	0.82	-0.9
1,187,911	-		HER17_RS05370	0.89	+0.4
1,187,930	-				-0.8
1,187,975	-				+0.6
1,188,013	+				-1.0
1,188,013	+				+1.1
1,188,013	+				+0.5
1,188,014	-				+0.1
1,188,014	-				+1.9
1,188,014	-				-0.0
1,188,036	-				-0.3
1,188,036	-				-0.4
1,188,036	-				-0.6
1,188,089	+				+1.1
1,188,090	-				+0.1
1,188,090	-				-0.8
1,188,156	-				-2.6
1,188,168	+				+0.9
1,188,179	+				+0.6
1,188,180	-				+0.3
1,188,196	-				-0.0
1,188,214	-				-1.9
1,188,214	-				-1.0
1,188,214	-				-1.3
1,188,258	+				-0.8
1,188,258	+				+1.0
1,188,258	+				-0.5
1,188,258	+				+0.1
1,188,261	+				-0.5
1,188,261	+				-0.7
1,188,261	+				-0.8
1,188,262	-				-0.8
1,188,264	+				-1.5
1,188,265	-				-0.3
1,188,265	-				-3.3
1,188,268	-				-2.4
1,188,312	+				-0.8
1,188,312	+				-0.5
1,188,313	-				-0.1
1,188,313	-				-0.9
1,188,313	-				-2.1
1,188,313	-				-0.2
1,188,313	-				-1.3
1,188,455	-		HER17_RS05375	0.20	-0.7
1,188,502	+		HER17_RS05375	0.25	-0.1
1,188,503	-		HER17_RS05375	0.25	-1.7
1,188,613	-		HER17_RS05375	0.35	-1.4
1,188,630	-		HER17_RS05375	0.36	-2.3
1,188,645	+		HER17_RS05375	0.38	-0.7
1,188,645	+		HER17_RS05375	0.38	-1.0
1,188,694	+		HER17_RS05375	0.42	-1.2
1,188,694	+		HER17_RS05375	0.42	-0.8
1,188,735	+		HER17_RS05375	0.46	-2.6
1,188,736	-		HER17_RS05375	0.46	-1.2
1,188,736	-		HER17_RS05375	0.46	-2.1
1,188,873	+		HER17_RS05375	0.59	-1.3
1,188,962	-		HER17_RS05375	0.67	-0.1
1,188,962	-		HER17_RS05375	0.67	-1.7
1,188,962	-		HER17_RS05375	0.67	-1.6
1,188,962	-		HER17_RS05375	0.67	-2.0