Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05000

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04990 and HER17_RS04995 are separated by 79 nucleotidesHER17_RS04995 and HER17_RS05000 are separated by 105 nucleotidesHER17_RS05000 and HER17_RS05005 are separated by 288 nucleotides HER17_RS04990: HER17_RS04990 - isocyanide synthase family protein, at 1,129,128 to 1,130,093 _RS04990 HER17_RS04995: HER17_RS04995 - hypothetical protein, at 1,130,173 to 1,130,322 _RS04995 HER17_RS05000: HER17_RS05000 - bacteriocin immunity protein, at 1,130,428 to 1,130,850 _RS05000 HER17_RS05005: HER17_RS05005 - glutaredoxin 2, at 1,131,139 to 1,131,774 _RS05005 Position (kb) 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1129.468 kb on + strand, within HER17_RS04990at 1129.487 kb on + strand, within HER17_RS04990at 1129.488 kb on - strand, within HER17_RS04990at 1129.508 kb on + strand, within HER17_RS04990at 1129.534 kb on + strand, within HER17_RS04990at 1129.571 kb on + strand, within HER17_RS04990at 1129.586 kb on - strand, within HER17_RS04990at 1129.614 kb on + strand, within HER17_RS04990at 1129.614 kb on + strand, within HER17_RS04990at 1129.615 kb on - strand, within HER17_RS04990at 1129.647 kb on + strand, within HER17_RS04990at 1129.648 kb on - strand, within HER17_RS04990at 1129.684 kb on + strand, within HER17_RS04990at 1129.685 kb on - strand, within HER17_RS04990at 1129.734 kb on + strand, within HER17_RS04990at 1129.742 kb on + strand, within HER17_RS04990at 1129.759 kb on - strand, within HER17_RS04990at 1129.809 kb on - strand, within HER17_RS04990at 1129.809 kb on - strand, within HER17_RS04990at 1129.922 kb on + strand, within HER17_RS04990at 1129.922 kb on + strand, within HER17_RS04990at 1129.922 kb on + strand, within HER17_RS04990at 1129.923 kb on - strand, within HER17_RS04990at 1129.923 kb on - strand, within HER17_RS04990at 1129.923 kb on - strand, within HER17_RS04990at 1129.980 kb on - strand, within HER17_RS04990at 1130.008 kb on + strandat 1130.008 kb on + strandat 1130.008 kb on + strandat 1130.008 kb on + strandat 1130.008 kb on + strandat 1130.009 kb on - strandat 1130.009 kb on - strandat 1130.065 kb on - strandat 1130.065 kb on - strandat 1130.091 kb on + strandat 1130.143 kb on + strandat 1130.143 kb on + strandat 1130.144 kb on - strandat 1130.144 kb on - strandat 1130.144 kb on - strandat 1130.144 kb on - strandat 1130.144 kb on - strandat 1130.153 kb on + strandat 1130.154 kb on - strandat 1130.155 kb on + strandat 1130.156 kb on - strandat 1130.156 kb on - strandat 1130.156 kb on - strandat 1130.209 kb on - strand, within HER17_RS04995at 1130.263 kb on + strand, within HER17_RS04995at 1130.263 kb on + strand, within HER17_RS04995at 1130.263 kb on + strand, within HER17_RS04995at 1130.263 kb on + strand, within HER17_RS04995at 1130.263 kb on + strand, within HER17_RS04995at 1130.264 kb on - strand, within HER17_RS04995at 1130.264 kb on - strand, within HER17_RS04995at 1130.264 kb on - strand, within HER17_RS04995at 1130.264 kb on - strand, within HER17_RS04995at 1130.292 kb on + strand, within HER17_RS04995at 1130.293 kb on - strand, within HER17_RS04995at 1130.314 kb on - strandat 1130.387 kb on + strandat 1130.409 kb on + strandat 1130.409 kb on + strandat 1130.425 kb on + strandat 1130.435 kb on + strandat 1130.435 kb on + strandat 1130.435 kb on + strandat 1130.436 kb on - strandat 1130.436 kb on - strandat 1130.602 kb on + strand, within HER17_RS05000at 1130.603 kb on - strand, within HER17_RS05000at 1130.603 kb on - strand, within HER17_RS05000at 1130.652 kb on + strand, within HER17_RS05000at 1130.652 kb on + strand, within HER17_RS05000at 1130.662 kb on + strand, within HER17_RS05000at 1130.662 kb on + strand, within HER17_RS05000at 1130.662 kb on + strand, within HER17_RS05000at 1130.663 kb on - strand, within HER17_RS05000at 1130.663 kb on - strand, within HER17_RS05000at 1130.669 kb on + strand, within HER17_RS05000at 1130.673 kb on + strand, within HER17_RS05000at 1130.673 kb on + strand, within HER17_RS05000at 1130.674 kb on - strand, within HER17_RS05000at 1130.674 kb on - strand, within HER17_RS05000at 1130.674 kb on - strand, within HER17_RS05000at 1130.677 kb on - strand, within HER17_RS05000at 1130.738 kb on - strand, within HER17_RS05000at 1130.738 kb on - strand, within HER17_RS05000at 1130.738 kb on - strand, within HER17_RS05000at 1130.789 kb on - strand, within HER17_RS05000at 1130.816 kb on + strandat 1130.817 kb on - strandat 1130.848 kb on + strandat 1130.849 kb on - strandat 1130.849 kb on - strandat 1130.849 kb on - strandat 1130.898 kb on - strandat 1130.908 kb on + strandat 1130.908 kb on + strandat 1130.908 kb on + strandat 1130.911 kb on - strandat 1130.933 kb on - strandat 1130.933 kb on - strandat 1130.942 kb on - strandat 1130.944 kb on - strandat 1130.944 kb on - strandat 1130.991 kb on + strandat 1131.043 kb on - strandat 1131.129 kb on + strandat 1131.129 kb on + strandat 1131.251 kb on - strand, within HER17_RS05005at 1131.411 kb on - strand, within HER17_RS05005at 1131.481 kb on - strand, within HER17_RS05005at 1131.505 kb on - strand, within HER17_RS05005at 1131.505 kb on - strand, within HER17_RS05005at 1131.572 kb on + strand, within HER17_RS05005at 1131.573 kb on - strand, within HER17_RS05005at 1131.573 kb on - strand, within HER17_RS05005at 1131.681 kb on + strand, within HER17_RS05005at 1131.682 kb on - strand, within HER17_RS05005at 1131.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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1,129,468 + HER17_RS04990 0.35 +0.6
1,129,487 + HER17_RS04990 0.37 +0.4
1,129,488 - HER17_RS04990 0.37 -0.8
1,129,508 + HER17_RS04990 0.39 +0.7
1,129,534 + HER17_RS04990 0.42 +0.3
1,129,571 + HER17_RS04990 0.46 -0.4
1,129,586 - HER17_RS04990 0.47 -0.3
1,129,614 + HER17_RS04990 0.50 -0.2
1,129,614 + HER17_RS04990 0.50 +0.6
1,129,615 - HER17_RS04990 0.50 -1.4
1,129,647 + HER17_RS04990 0.54 +0.3
1,129,648 - HER17_RS04990 0.54 -0.7
1,129,684 + HER17_RS04990 0.58 -0.7
1,129,685 - HER17_RS04990 0.58 -0.4
1,129,734 + HER17_RS04990 0.63 -0.1
1,129,742 + HER17_RS04990 0.64 -0.2
1,129,759 - HER17_RS04990 0.65 +0.0
1,129,809 - HER17_RS04990 0.70 +0.1
1,129,809 - HER17_RS04990 0.70 -0.6
1,129,922 + HER17_RS04990 0.82 +0.1
1,129,922 + HER17_RS04990 0.82 +0.0
1,129,922 + HER17_RS04990 0.82 +1.6
1,129,923 - HER17_RS04990 0.82 +0.6
1,129,923 - HER17_RS04990 0.82 -1.0
1,129,923 - HER17_RS04990 0.82 -0.8
1,129,980 - HER17_RS04990 0.88 +0.4
1,130,008 + -0.4
1,130,008 + +0.0
1,130,008 + +0.7
1,130,008 + -1.0
1,130,008 + -0.6
1,130,009 - -1.2
1,130,009 - +0.3
1,130,065 - -0.8
1,130,065 - -1.0
1,130,091 + +0.2
1,130,143 + +0.5
1,130,143 + -0.5
1,130,144 - +0.1
1,130,144 - -0.9
1,130,144 - +0.1
1,130,144 - +1.1
1,130,144 - -0.8
1,130,153 + +0.1
1,130,154 - -0.3
1,130,155 + -1.7
1,130,156 - +1.1
1,130,156 - -1.0
1,130,156 - -2.0
1,130,209 - HER17_RS04995 0.24 +0.3
1,130,263 + HER17_RS04995 0.60 +1.2
1,130,263 + HER17_RS04995 0.60 +0.9
1,130,263 + HER17_RS04995 0.60 -0.0
1,130,263 + HER17_RS04995 0.60 +0.3
1,130,263 + HER17_RS04995 0.60 -0.1
1,130,264 - HER17_RS04995 0.61 +0.2
1,130,264 - HER17_RS04995 0.61 -0.9
1,130,264 - HER17_RS04995 0.61 -0.0
1,130,264 - HER17_RS04995 0.61 -0.8
1,130,292 + HER17_RS04995 0.79 -0.3
1,130,293 - HER17_RS04995 0.80 +0.3
1,130,314 - -0.5
1,130,387 + -0.7
1,130,409 + +0.6
1,130,409 + +0.8
1,130,425 + -0.4
1,130,435 + +0.0
1,130,435 + -0.4
1,130,435 + -0.7
1,130,436 - -0.5
1,130,436 - -0.7
1,130,602 + HER17_RS05000 0.41 +0.4
1,130,603 - HER17_RS05000 0.41 -0.3
1,130,603 - HER17_RS05000 0.41 +0.4
1,130,652 + HER17_RS05000 0.53 +2.6
1,130,652 + HER17_RS05000 0.53 +1.0
1,130,662 + HER17_RS05000 0.55 +1.0
1,130,662 + HER17_RS05000 0.55 -0.1
1,130,662 + HER17_RS05000 0.55 +0.3
1,130,663 - HER17_RS05000 0.56 -0.1
1,130,663 - HER17_RS05000 0.56 -0.7
1,130,669 + HER17_RS05000 0.57 -0.6
1,130,673 + HER17_RS05000 0.58 +0.8
1,130,673 + HER17_RS05000 0.58 +0.2
1,130,674 - HER17_RS05000 0.58 -1.0
1,130,674 - HER17_RS05000 0.58 +0.1
1,130,674 - HER17_RS05000 0.58 +0.1
1,130,677 - HER17_RS05000 0.59 -0.9
1,130,738 - HER17_RS05000 0.73 -0.0
1,130,738 - HER17_RS05000 0.73 -0.4
1,130,738 - HER17_RS05000 0.73 +0.7
1,130,789 - HER17_RS05000 0.85 -0.1
1,130,816 + -0.1
1,130,817 - +1.1
1,130,848 + +0.5
1,130,849 - +0.2
1,130,849 - -0.1
1,130,849 - +0.4
1,130,898 - -0.2
1,130,908 + -0.1
1,130,908 + +0.4
1,130,908 + -0.9
1,130,911 - -0.9
1,130,933 - +0.2
1,130,933 - -0.3
1,130,942 - +0.4
1,130,944 - -0.7
1,130,944 - -0.6
1,130,991 + +0.5
1,131,043 - +0.3
1,131,129 + -0.6
1,131,129 + +0.1
1,131,251 - HER17_RS05005 0.18 -0.3
1,131,411 - HER17_RS05005 0.43 +0.5
1,131,481 - HER17_RS05005 0.54 -0.3
1,131,505 - HER17_RS05005 0.58 +1.3
1,131,505 - HER17_RS05005 0.58 +0.8
1,131,572 + HER17_RS05005 0.68 +0.3
1,131,573 - HER17_RS05005 0.68 -0.1
1,131,573 - HER17_RS05005 0.68 -0.0
1,131,681 + HER17_RS05005 0.85 -0.1
1,131,682 - HER17_RS05005 0.85 -0.1
1,131,850 - +0.2

Or see this region's nucleotide sequence