Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04115

Experiment: M9+starch

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04110 and HER17_RS04115 are separated by 53 nucleotidesHER17_RS04115 and HER17_RS04120 are separated by 387 nucleotides HER17_RS04110: HER17_RS04110 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 933,934 to 935,283 _RS04110 HER17_RS04115: HER17_RS04115 - GTP diphosphokinase, at 935,337 to 937,571 _RS04115 HER17_RS04120: HER17_RS04120 - nucleoside triphosphate pyrophosphohydrolase, at 937,959 to 938,771 _RS04120 Position (kb) 935 936 937 938Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 934.339 kb on + strand, within HER17_RS04110at 934.339 kb on + strand, within HER17_RS04110at 934.339 kb on + strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.370 kb on + strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.372 kb on + strand, within HER17_RS04110at 934.373 kb on - strand, within HER17_RS04110at 934.658 kb on - strand, within HER17_RS04110at 934.692 kb on - strand, within HER17_RS04110at 934.755 kb on + strand, within HER17_RS04110at 934.831 kb on - strand, within HER17_RS04110at 934.835 kb on + strand, within HER17_RS04110at 934.835 kb on + strand, within HER17_RS04110at 934.836 kb on - strand, within HER17_RS04110at 934.839 kb on - strand, within HER17_RS04110at 934.907 kb on + strand, within HER17_RS04110at 934.907 kb on + strand, within HER17_RS04110at 934.908 kb on - strand, within HER17_RS04110at 934.908 kb on - strand, within HER17_RS04110at 934.925 kb on + strand, within HER17_RS04110at 935.040 kb on + strand, within HER17_RS04110at 935.041 kb on - strand, within HER17_RS04110at 935.045 kb on + strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.049 kb on - strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.165 kb on + strandat 935.166 kb on - strandat 935.166 kb on - strandat 935.168 kb on + strandat 935.211 kb on + strandat 935.211 kb on + strandat 935.211 kb on + strandat 935.284 kb on + strandat 935.284 kb on + strandat 935.285 kb on - strandat 935.285 kb on - strandat 935.326 kb on - strandat 935.326 kb on - strandat 935.337 kb on - strandat 935.366 kb on + strandat 935.457 kb on + strandat 935.498 kb on - strandat 935.870 kb on + strand, within HER17_RS04115at 935.876 kb on + strand, within HER17_RS04115at 935.876 kb on + strand, within HER17_RS04115at 935.877 kb on - strand, within HER17_RS04115at 935.880 kb on + strand, within HER17_RS04115at 935.880 kb on + strand, within HER17_RS04115at 935.881 kb on - strand, within HER17_RS04115at 935.881 kb on - strand, within HER17_RS04115at 935.902 kb on + strand, within HER17_RS04115at 935.903 kb on - strand, within HER17_RS04115at 935.917 kb on + strand, within HER17_RS04115at 935.917 kb on + strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.967 kb on + strand, within HER17_RS04115at 935.968 kb on - strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.084 kb on + strand, within HER17_RS04115at 936.084 kb on + strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.106 kb on - strand, within HER17_RS04115at 936.106 kb on - strand, within HER17_RS04115at 936.172 kb on + strand, within HER17_RS04115at 936.218 kb on + strand, within HER17_RS04115at 936.264 kb on + strand, within HER17_RS04115at 936.405 kb on + strand, within HER17_RS04115at 936.405 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.553 kb on - strand, within HER17_RS04115at 936.560 kb on + strand, within HER17_RS04115at 936.580 kb on + strand, within HER17_RS04115at 936.580 kb on + strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.619 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.691 kb on - strand, within HER17_RS04115at 936.777 kb on + strand, within HER17_RS04115at 936.778 kb on - strand, within HER17_RS04115at 936.779 kb on + strand, within HER17_RS04115at 936.780 kb on - strand, within HER17_RS04115at 936.846 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.958 kb on + strand, within HER17_RS04115at 937.103 kb on + strand, within HER17_RS04115at 937.103 kb on + strand, within HER17_RS04115at 937.104 kb on - strand, within HER17_RS04115at 937.142 kb on - strand, within HER17_RS04115at 937.318 kb on - strand, within HER17_RS04115at 937.383 kb on - strandat 937.413 kb on - strandat 937.413 kb on - strandat 937.413 kb on - strandat 937.418 kb on - strandat 937.418 kb on - strandat 937.470 kb on - strandat 937.485 kb on + strandat 937.486 kb on - strandat 937.486 kb on - strandat 937.486 kb on - strandat 937.569 kb on + strandat 937.569 kb on + strandat 937.570 kb on - strandat 937.644 kb on - strandat 937.903 kb on - strandat 937.955 kb on + strandat 937.956 kb on - strandat 937.959 kb on - strandat 937.967 kb on - strandat 938.082 kb on + strand, within HER17_RS04120at 938.083 kb on - strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.234 kb on + strand, within HER17_RS04120at 938.235 kb on - strand, within HER17_RS04120at 938.487 kb on + strand, within HER17_RS04120

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+starch
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934,339 + HER17_RS04110 0.30 -0.4
934,339 + HER17_RS04110 0.30 -0.7
934,339 + HER17_RS04110 0.30 -0.7
934,340 - HER17_RS04110 0.30 -0.1
934,340 - HER17_RS04110 0.30 -0.0
934,340 - HER17_RS04110 0.30 +0.3
934,340 - HER17_RS04110 0.30 +0.4
934,370 + HER17_RS04110 0.32 -0.3
934,371 - HER17_RS04110 0.32 -0.8
934,371 - HER17_RS04110 0.32 +0.2
934,371 - HER17_RS04110 0.32 -2.5
934,372 + HER17_RS04110 0.32 +1.8
934,373 - HER17_RS04110 0.33 +0.1
934,658 - HER17_RS04110 0.54 -0.5
934,692 - HER17_RS04110 0.56 -0.3
934,755 + HER17_RS04110 0.61 -0.2
934,831 - HER17_RS04110 0.66 +0.1
934,835 + HER17_RS04110 0.67 -0.3
934,835 + HER17_RS04110 0.67 +0.4
934,836 - HER17_RS04110 0.67 -0.4
934,839 - HER17_RS04110 0.67 +0.1
934,907 + HER17_RS04110 0.72 +0.0
934,907 + HER17_RS04110 0.72 +0.6
934,908 - HER17_RS04110 0.72 +1.1
934,908 - HER17_RS04110 0.72 -0.1
934,925 + HER17_RS04110 0.73 +0.1
935,040 + HER17_RS04110 0.82 +0.5
935,041 - HER17_RS04110 0.82 -0.0
935,045 + HER17_RS04110 0.82 -0.4
935,046 - HER17_RS04110 0.82 +0.4
935,046 - HER17_RS04110 0.82 +1.1
935,046 - HER17_RS04110 0.82 -0.7
935,046 - HER17_RS04110 0.82 +0.6
935,048 + HER17_RS04110 0.83 -0.0
935,048 + HER17_RS04110 0.83 -1.1
935,048 + HER17_RS04110 0.83 -0.0
935,049 - HER17_RS04110 0.83 -0.5
935,122 + HER17_RS04110 0.88 -0.6
935,122 + HER17_RS04110 0.88 +0.4
935,122 + HER17_RS04110 0.88 +0.4
935,122 + HER17_RS04110 0.88 -0.0
935,122 + HER17_RS04110 0.88 -0.8
935,122 + HER17_RS04110 0.88 -0.3
935,122 + HER17_RS04110 0.88 -0.0
935,122 + HER17_RS04110 0.88 -0.3
935,123 - HER17_RS04110 0.88 -0.2
935,123 - HER17_RS04110 0.88 -0.9
935,123 - HER17_RS04110 0.88 -2.5
935,123 - HER17_RS04110 0.88 -0.4
935,123 - HER17_RS04110 0.88 +0.9
935,123 - HER17_RS04110 0.88 -0.1
935,165 + -0.3
935,166 - +0.1
935,166 - -0.3
935,168 + -0.1
935,211 + -0.2
935,211 + +0.3
935,211 + +0.0
935,284 + -0.7
935,284 + +0.2
935,285 - +0.8
935,285 - -1.2
935,326 - -1.3
935,326 - -0.9
935,337 - -3.5
935,366 + -3.2
935,457 + -4.3
935,498 - -2.5
935,870 + HER17_RS04115 0.24 -4.1
935,876 + HER17_RS04115 0.24 -2.9
935,876 + HER17_RS04115 0.24 -3.2
935,877 - HER17_RS04115 0.24 -3.4
935,880 + HER17_RS04115 0.24 -5.0
935,880 + HER17_RS04115 0.24 -2.6
935,881 - HER17_RS04115 0.24 -3.8
935,881 - HER17_RS04115 0.24 -4.0
935,902 + HER17_RS04115 0.25 -2.3
935,903 - HER17_RS04115 0.25 -4.5
935,917 + HER17_RS04115 0.26 -3.9
935,917 + HER17_RS04115 0.26 -4.3
935,918 - HER17_RS04115 0.26 -3.9
935,918 - HER17_RS04115 0.26 -2.6
935,918 - HER17_RS04115 0.26 -3.4
935,967 + HER17_RS04115 0.28 -4.5
935,968 - HER17_RS04115 0.28 -3.1
936,018 + HER17_RS04115 0.30 -4.4
936,018 + HER17_RS04115 0.30 -2.8
936,018 + HER17_RS04115 0.30 -1.2
936,019 - HER17_RS04115 0.31 -3.3
936,019 - HER17_RS04115 0.31 -3.8
936,019 - HER17_RS04115 0.31 -2.5
936,019 - HER17_RS04115 0.31 -1.6
936,019 - HER17_RS04115 0.31 -3.8
936,019 - HER17_RS04115 0.31 -4.1
936,019 - HER17_RS04115 0.31 -4.1
936,019 - HER17_RS04115 0.31 -2.5
936,084 + HER17_RS04115 0.33 -2.5
936,084 + HER17_RS04115 0.33 -3.9
936,085 - HER17_RS04115 0.33 -4.0
936,085 - HER17_RS04115 0.33 -1.4
936,085 - HER17_RS04115 0.33 -2.6
936,085 - HER17_RS04115 0.33 -2.0
936,085 - HER17_RS04115 0.33 -4.2
936,085 - HER17_RS04115 0.33 -5.9
936,085 - HER17_RS04115 0.33 -0.3
936,101 + HER17_RS04115 0.34 -3.8
936,101 + HER17_RS04115 0.34 -2.5
936,101 + HER17_RS04115 0.34 -4.0
936,102 - HER17_RS04115 0.34 -3.5
936,102 - HER17_RS04115 0.34 -2.9
936,102 - HER17_RS04115 0.34 -2.6
936,105 + HER17_RS04115 0.34 -2.5
936,105 + HER17_RS04115 0.34 -4.2
936,105 + HER17_RS04115 0.34 -4.3
936,105 + HER17_RS04115 0.34 -3.1
936,106 - HER17_RS04115 0.34 -1.6
936,106 - HER17_RS04115 0.34 -3.1
936,172 + HER17_RS04115 0.37 -2.1
936,218 + HER17_RS04115 0.39 -3.5
936,264 + HER17_RS04115 0.41 -2.3
936,405 + HER17_RS04115 0.48 -3.1
936,405 + HER17_RS04115 0.48 -3.1
936,511 + HER17_RS04115 0.53 -0.0
936,511 + HER17_RS04115 0.53 -0.8
936,511 + HER17_RS04115 0.53 -1.0
936,553 - HER17_RS04115 0.54 +0.1
936,560 + HER17_RS04115 0.55 -1.9
936,580 + HER17_RS04115 0.56 -2.6
936,580 + HER17_RS04115 0.56 -1.7
936,581 - HER17_RS04115 0.56 -3.3
936,581 - HER17_RS04115 0.56 -2.8
936,581 - HER17_RS04115 0.56 -3.8
936,581 - HER17_RS04115 0.56 -2.6
936,581 - HER17_RS04115 0.56 -3.4
936,581 - HER17_RS04115 0.56 -2.3
936,581 - HER17_RS04115 0.56 -1.0
936,581 - HER17_RS04115 0.56 -1.3
936,581 - HER17_RS04115 0.56 -2.3
936,581 - HER17_RS04115 0.56 -4.1
936,619 - HER17_RS04115 0.57 -3.0
936,675 - HER17_RS04115 0.60 -0.3
936,675 - HER17_RS04115 0.60 -3.0
936,675 - HER17_RS04115 0.60 +0.3
936,675 - HER17_RS04115 0.60 -2.9
936,691 - HER17_RS04115 0.61 -3.8
936,777 + HER17_RS04115 0.64 -0.8
936,778 - HER17_RS04115 0.64 -3.5
936,779 + HER17_RS04115 0.65 -3.5
936,780 - HER17_RS04115 0.65 -3.7
936,846 - HER17_RS04115 0.68 -2.2
936,934 - HER17_RS04115 0.71 -2.5
936,934 - HER17_RS04115 0.71 -3.2
936,934 - HER17_RS04115 0.71 -1.6
936,958 + HER17_RS04115 0.73 -3.2
937,103 + HER17_RS04115 0.79 -3.6
937,103 + HER17_RS04115 0.79 -2.8
937,104 - HER17_RS04115 0.79 -2.3
937,142 - HER17_RS04115 0.81 -4.2
937,318 - HER17_RS04115 0.89 -0.4
937,383 - -0.6
937,413 - -2.7
937,413 - -3.5
937,413 - -2.6
937,418 - -2.5
937,418 - -2.6
937,470 - -3.1
937,485 + -2.3
937,486 - -2.9
937,486 - -1.6
937,486 - -1.7
937,569 + +0.8
937,569 + +0.9
937,570 - -0.3
937,644 - -1.4
937,903 - +0.5
937,955 + +0.2
937,956 - -0.0
937,959 - +0.8
937,967 - -0.5
938,082 + HER17_RS04120 0.15 +0.5
938,083 - HER17_RS04120 0.15 -2.8
938,084 + HER17_RS04120 0.15 -1.4
938,084 + HER17_RS04120 0.15 -0.8
938,084 + HER17_RS04120 0.15 +0.4
938,084 + HER17_RS04120 0.15 +0.2
938,084 + HER17_RS04120 0.15 -0.6
938,085 - HER17_RS04120 0.15 -0.6
938,085 - HER17_RS04120 0.15 +0.5
938,085 - HER17_RS04120 0.15 -1.6
938,085 - HER17_RS04120 0.15 +0.2
938,100 + HER17_RS04120 0.17 -0.3
938,100 + HER17_RS04120 0.17 +0.5
938,100 + HER17_RS04120 0.17 -1.3
938,100 + HER17_RS04120 0.17 -0.2
938,101 - HER17_RS04120 0.17 +0.1
938,101 - HER17_RS04120 0.17 -0.4
938,101 - HER17_RS04120 0.17 -0.2
938,234 + HER17_RS04120 0.34 +0.4
938,235 - HER17_RS04120 0.34 +2.3
938,487 + HER17_RS04120 0.65 +0.5

Or see this region's nucleotide sequence