Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02340 and HER17_RS02345 are separated by 43 nucleotides HER17_RS02345 and HER17_RS02350 are separated by 60 nucleotides
HER17_RS02340: HER17_RS02340 - glucose-6-phosphate isomerase, at 526,467 to 528,116
_RS02340
HER17_RS02345: HER17_RS02345 - DUF4156 domain-containing protein, at 528,160 to 528,504
_RS02345
HER17_RS02350: HER17_RS02350 - EF-P beta-lysylation protein EpmB, at 528,565 to 529,617
_RS02350
Position (kb) 528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 527.331 kb on - strand, within HER17_RS02340 at 527.436 kb on + strand, within HER17_RS02340 at 527.487 kb on + strand, within HER17_RS02340 at 527.487 kb on + strand, within HER17_RS02340 at 527.488 kb on - strand, within HER17_RS02340 at 527.488 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.574 kb on + strand, within HER17_RS02340 at 527.575 kb on - strand, within HER17_RS02340 at 527.631 kb on + strand, within HER17_RS02340 at 527.632 kb on - strand, within HER17_RS02340 at 527.768 kb on + strand, within HER17_RS02340 at 527.768 kb on + strand, within HER17_RS02340 at 527.769 kb on - strand, within HER17_RS02340 at 527.852 kb on - strand, within HER17_RS02340 at 527.879 kb on + strand, within HER17_RS02340 at 527.880 kb on - strand, within HER17_RS02340 at 527.931 kb on + strand, within HER17_RS02340 at 527.931 kb on + strand, within HER17_RS02340 at 527.932 kb on - strand, within HER17_RS02340 at 528.002 kb on - strand at 528.050 kb on + strand at 528.051 kb on - strand at 528.074 kb on + strand at 528.171 kb on + strand at 528.172 kb on - strand at 528.172 kb on - strand at 528.318 kb on + strand, within HER17_RS02345 at 528.319 kb on - strand, within HER17_RS02345 at 528.354 kb on + strand, within HER17_RS02345 at 528.355 kb on - strand, within HER17_RS02345 at 528.381 kb on + strand, within HER17_RS02345 at 528.384 kb on + strand, within HER17_RS02345 at 528.385 kb on - strand, within HER17_RS02345 at 528.408 kb on + strand, within HER17_RS02345 at 528.409 kb on - strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.416 kb on - strand, within HER17_RS02345 at 528.416 kb on - strand, within HER17_RS02345 at 528.491 kb on - strand at 528.502 kb on + strand at 528.507 kb on + strand at 528.559 kb on + strand at 528.560 kb on - strand at 528.560 kb on - strand at 528.560 kb on - strand at 528.574 kb on + strand at 528.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 527,331 - HER17_RS02340 0.52 -3.0 527,436 + HER17_RS02340 0.59 -1.9 527,487 + HER17_RS02340 0.62 -0.8 527,487 + HER17_RS02340 0.62 -1.2 527,488 - HER17_RS02340 0.62 -1.2 527,488 - HER17_RS02340 0.62 -1.3 527,526 - HER17_RS02340 0.64 -1.8 527,526 - HER17_RS02340 0.64 -2.7 527,526 - HER17_RS02340 0.64 -1.2 527,574 + HER17_RS02340 0.67 -2.2 527,575 - HER17_RS02340 0.67 -2.6 527,631 + HER17_RS02340 0.71 -2.9 527,632 - HER17_RS02340 0.71 -0.6 527,768 + HER17_RS02340 0.79 -0.3 527,768 + HER17_RS02340 0.79 -3.1 527,769 - HER17_RS02340 0.79 -1.2 527,852 - HER17_RS02340 0.84 -2.7 527,879 + HER17_RS02340 0.86 -2.2 527,880 - HER17_RS02340 0.86 -1.2 527,931 + HER17_RS02340 0.89 -2.3 527,931 + HER17_RS02340 0.89 -1.8 527,932 - HER17_RS02340 0.89 -1.0 528,002 - -2.4 528,050 + -0.6 528,051 - -3.4 528,074 + -0.8 528,171 + -0.4 528,172 - +0.5 528,172 - +1.7 528,318 + HER17_RS02345 0.46 -0.6 528,319 - HER17_RS02345 0.46 -0.3 528,354 + HER17_RS02345 0.56 +0.5 528,355 - HER17_RS02345 0.57 -0.3 528,381 + HER17_RS02345 0.64 -0.0 528,384 + HER17_RS02345 0.65 -0.1 528,385 - HER17_RS02345 0.65 +0.2 528,408 + HER17_RS02345 0.72 +0.5 528,409 - HER17_RS02345 0.72 -0.5 528,415 + HER17_RS02345 0.74 +0.4 528,415 + HER17_RS02345 0.74 +1.5 528,415 + HER17_RS02345 0.74 +0.0 528,416 - HER17_RS02345 0.74 +0.1 528,416 - HER17_RS02345 0.74 +0.5 528,491 - +0.4 528,502 + +1.1 528,507 + -0.0 528,559 + +0.2 528,560 - +0.4 528,560 - -0.0 528,560 - +0.3 528,574 + -0.9 528,608 - -0.0
Or see this region's nucleotide sequence