Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00535 and HER17_RS00540 are separated by 278 nucleotides HER17_RS00540 and HER17_RS00545 are separated by 310 nucleotides
HER17_RS00535: HER17_RS00535 - methyl-accepting chemotaxis protein, at 127,917 to 129,431
_RS00535
HER17_RS00540: HER17_RS00540 - methyl-accepting chemotaxis protein, at 129,710 to 131,389
_RS00540
HER17_RS00545: HER17_RS00545 - GntP family transporter, at 131,700 to 133,058
_RS00545
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.724 kb on - strand, within HER17_RS00535 at 128.759 kb on - strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.873 kb on - strand, within HER17_RS00535 at 128.948 kb on + strand, within HER17_RS00535 at 128.949 kb on - strand, within HER17_RS00535 at 128.964 kb on + strand, within HER17_RS00535 at 128.965 kb on - strand, within HER17_RS00535 at 128.965 kb on - strand, within HER17_RS00535 at 129.090 kb on - strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.219 kb on + strand, within HER17_RS00535 at 129.219 kb on + strand, within HER17_RS00535 at 129.220 kb on - strand, within HER17_RS00535 at 129.242 kb on + strand, within HER17_RS00535 at 129.248 kb on + strand, within HER17_RS00535 at 129.249 kb on - strand, within HER17_RS00535 at 129.249 kb on - strand, within HER17_RS00535 at 129.264 kb on + strand, within HER17_RS00535 at 129.264 kb on + strand, within HER17_RS00535 at 129.265 kb on - strand, within HER17_RS00535 at 129.311 kb on + strand at 129.311 kb on + strand at 129.311 kb on + strand at 129.312 kb on - strand at 129.312 kb on - strand at 129.314 kb on + strand at 129.315 kb on - strand at 129.354 kb on + strand at 129.355 kb on - strand at 129.355 kb on - strand at 129.355 kb on - strand at 129.357 kb on + strand at 129.357 kb on + strand at 129.358 kb on - strand at 129.371 kb on + strand at 129.372 kb on - strand at 129.422 kb on + strand at 129.435 kb on - strand at 129.435 kb on - strand at 129.447 kb on + strand at 129.447 kb on + strand at 129.448 kb on - strand at 129.448 kb on - strand at 129.448 kb on - strand at 129.460 kb on + strand at 129.460 kb on + strand at 129.460 kb on + strand at 129.466 kb on + strand at 129.467 kb on - strand at 129.467 kb on - strand at 129.469 kb on + strand at 129.470 kb on - strand at 129.503 kb on + strand at 129.504 kb on - strand at 129.504 kb on - strand at 129.518 kb on + strand at 129.535 kb on + strand at 129.535 kb on + strand at 129.536 kb on - strand at 129.536 kb on - strand at 129.540 kb on - strand at 129.540 kb on - strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.554 kb on - strand at 129.583 kb on + strand at 129.588 kb on + strand at 129.589 kb on - strand at 129.705 kb on + strand at 129.706 kb on - strand at 129.711 kb on + strand at 129.711 kb on + strand at 129.711 kb on + strand at 129.712 kb on - strand at 129.805 kb on + strand at 129.805 kb on + strand at 129.805 kb on + strand at 129.806 kb on - strand at 129.806 kb on - strand at 130.607 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.737 kb on - strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.808 kb on - strand, within HER17_RS00540 at 130.808 kb on - strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.829 kb on - strand, within HER17_RS00540 at 130.871 kb on + strand, within HER17_RS00540 at 130.941 kb on - strand, within HER17_RS00540 at 130.941 kb on - strand, within HER17_RS00540 at 130.982 kb on + strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.996 kb on + strand, within HER17_RS00540 at 131.009 kb on + strand, within HER17_RS00540 at 131.014 kb on - strand, within HER17_RS00540 at 131.080 kb on - strand, within HER17_RS00540 at 131.266 kb on + strand at 131.305 kb on + strand at 131.305 kb on + strand at 131.416 kb on + strand at 131.416 kb on + strand at 131.417 kb on - strand at 131.417 kb on - strand at 131.436 kb on + strand at 131.436 kb on + strand at 131.436 kb on + strand at 131.437 kb on - strand at 131.437 kb on - strand at 131.437 kb on - strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.555 kb on - strand at 131.557 kb on + strand at 131.559 kb on + strand at 131.559 kb on + strand at 131.559 kb on + strand at 131.560 kb on - strand at 131.560 kb on - strand at 131.560 kb on - strand at 131.591 kb on + strand at 131.591 kb on + strand at 131.591 kb on + strand at 131.592 kb on - strand at 131.592 kb on - strand at 131.593 kb on + strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.599 kb on + strand at 131.622 kb on + strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.623 kb on - strand at 131.632 kb on - strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.636 kb on - strand at 131.636 kb on - strand at 131.636 kb on - strand at 131.648 kb on + strand at 131.655 kb on + strand at 131.701 kb on + strand at 131.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 128,724 - HER17_RS00535 0.53 +0.2 128,759 - HER17_RS00535 0.56 -0.5 128,869 + HER17_RS00535 0.63 +0.2 128,869 + HER17_RS00535 0.63 +0.5 128,869 + HER17_RS00535 0.63 -0.2 128,869 + HER17_RS00535 0.63 -0.2 128,869 + HER17_RS00535 0.63 -0.5 128,870 - HER17_RS00535 0.63 -0.4 128,870 - HER17_RS00535 0.63 -0.5 128,870 - HER17_RS00535 0.63 +0.1 128,870 - HER17_RS00535 0.63 +0.7 128,870 - HER17_RS00535 0.63 -1.2 128,872 + HER17_RS00535 0.63 +0.7 128,872 + HER17_RS00535 0.63 -0.2 128,872 + HER17_RS00535 0.63 +1.1 128,873 - HER17_RS00535 0.63 -0.8 128,948 + HER17_RS00535 0.68 -0.1 128,949 - HER17_RS00535 0.68 +0.6 128,964 + HER17_RS00535 0.69 -0.7 128,965 - HER17_RS00535 0.69 +0.4 128,965 - HER17_RS00535 0.69 +0.1 129,090 - HER17_RS00535 0.77 +0.3 129,215 + HER17_RS00535 0.86 +1.0 129,215 + HER17_RS00535 0.86 +0.7 129,215 + HER17_RS00535 0.86 -0.1 129,215 + HER17_RS00535 0.86 -0.0 129,215 + HER17_RS00535 0.86 +0.1 129,215 + HER17_RS00535 0.86 -0.0 129,215 + HER17_RS00535 0.86 +0.4 129,216 - HER17_RS00535 0.86 -0.3 129,216 - HER17_RS00535 0.86 +0.2 129,216 - HER17_RS00535 0.86 -0.5 129,216 - HER17_RS00535 0.86 -0.8 129,216 - HER17_RS00535 0.86 -0.3 129,216 - HER17_RS00535 0.86 -0.1 129,216 - HER17_RS00535 0.86 -1.1 129,216 - HER17_RS00535 0.86 +0.1 129,219 + HER17_RS00535 0.86 +0.1 129,219 + HER17_RS00535 0.86 +0.6 129,220 - HER17_RS00535 0.86 -1.0 129,242 + HER17_RS00535 0.87 -1.5 129,248 + HER17_RS00535 0.88 +0.1 129,249 - HER17_RS00535 0.88 -3.1 129,249 - HER17_RS00535 0.88 +0.1 129,264 + HER17_RS00535 0.89 -0.0 129,264 + HER17_RS00535 0.89 +0.6 129,265 - HER17_RS00535 0.89 +1.3 129,311 + +0.6 129,311 + +0.7 129,311 + +0.0 129,312 - +0.1 129,312 - -0.7 129,314 + +0.3 129,315 - +0.0 129,354 + -0.4 129,355 - -0.9 129,355 - +0.0 129,355 - -1.2 129,357 + -0.4 129,357 + +0.2 129,358 - -0.3 129,371 + +0.7 129,372 - +0.4 129,422 + -0.4 129,435 - -0.1 129,435 - +0.0 129,447 + -2.1 129,447 + -0.8 129,448 - -0.4 129,448 - -0.2 129,448 - +0.1 129,460 + -0.3 129,460 + -1.0 129,460 + +0.1 129,466 + -0.3 129,467 - +0.1 129,467 - -1.4 129,469 + +0.4 129,470 - -0.7 129,503 + -0.3 129,504 - -0.9 129,504 - +0.3 129,518 + -0.1 129,535 + +0.8 129,535 + +0.8 129,536 - -0.8 129,536 - -0.3 129,540 - -0.4 129,540 - -1.1 129,553 + +0.1 129,553 + +0.7 129,553 + -1.1 129,553 + -0.3 129,554 - -0.5 129,583 + +0.7 129,588 + +0.5 129,589 - -0.9 129,705 + +0.4 129,706 - -1.3 129,711 + -0.2 129,711 + +0.1 129,711 + +0.1 129,712 - +0.1 129,805 + +2.1 129,805 + +0.2 129,805 + -0.1 129,806 - +0.0 129,806 - -1.1 130,607 - HER17_RS00540 0.53 +0.0 130,616 - HER17_RS00540 0.54 +0.5 130,616 - HER17_RS00540 0.54 +0.9 130,616 - HER17_RS00540 0.54 +0.6 130,616 - HER17_RS00540 0.54 +0.5 130,737 - HER17_RS00540 0.61 -1.7 130,807 + HER17_RS00540 0.65 +0.1 130,807 + HER17_RS00540 0.65 -0.4 130,807 + HER17_RS00540 0.65 +0.4 130,808 - HER17_RS00540 0.65 +1.3 130,808 - HER17_RS00540 0.65 -0.2 130,828 + HER17_RS00540 0.67 -0.8 130,828 + HER17_RS00540 0.67 +0.3 130,828 + HER17_RS00540 0.67 -0.3 130,829 - HER17_RS00540 0.67 +0.1 130,871 + HER17_RS00540 0.69 -0.2 130,941 - HER17_RS00540 0.73 -0.1 130,941 - HER17_RS00540 0.73 +1.5 130,982 + HER17_RS00540 0.76 +0.2 130,983 - HER17_RS00540 0.76 +0.4 130,983 - HER17_RS00540 0.76 -0.3 130,983 - HER17_RS00540 0.76 -1.0 130,983 - HER17_RS00540 0.76 -1.9 130,983 - HER17_RS00540 0.76 -0.7 130,996 + HER17_RS00540 0.77 -0.4 131,009 + HER17_RS00540 0.77 +0.1 131,014 - HER17_RS00540 0.78 +0.1 131,080 - HER17_RS00540 0.82 +2.2 131,266 + +1.6 131,305 + +2.0 131,305 + +0.8 131,416 + +0.4 131,416 + +0.4 131,417 - -0.2 131,417 - +0.0 131,436 + +0.6 131,436 + -0.2 131,436 + +0.2 131,437 - -1.3 131,437 - +0.7 131,437 - -0.7 131,485 + -0.0 131,485 + -1.5 131,485 + +0.7 131,485 + -0.4 131,489 + -0.2 131,489 + -0.1 131,489 + +0.3 131,489 + +0.6 131,490 - +1.8 131,490 - -0.4 131,490 - -1.2 131,490 - -1.7 131,490 - -1.1 131,490 - +0.5 131,490 - -0.7 131,555 - +0.2 131,557 + -0.6 131,559 + +0.1 131,559 + +0.2 131,559 + +0.2 131,560 - -0.2 131,560 - -1.0 131,560 - +0.3 131,591 + -0.2 131,591 + -0.2 131,591 + +0.3 131,592 - +0.2 131,592 - -0.6 131,593 + +0.3 131,594 - -0.1 131,594 - +1.1 131,594 - -0.1 131,594 - +0.3 131,594 - -0.8 131,594 - +0.8 131,599 + +0.7 131,622 + +0.7 131,622 + +0.8 131,623 - +0.2 131,623 - +0.6 131,632 - -0.1 131,635 + -0.0 131,635 + +0.9 131,635 + +0.2 131,635 + +0.3 131,635 + +1.3 131,635 + -0.9 131,636 - +0.5 131,636 - -0.1 131,636 - -0.1 131,648 + +0.0 131,655 + -0.3 131,701 + +0.1 131,702 - +0.3
Or see this region's nucleotide sequence