Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21460

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,809,648	-		HER17_RS21450	0.51	-0.1
4,809,653	-		HER17_RS21450	0.51	+1.5
4,809,653	-		HER17_RS21450	0.51	+1.5
4,809,653	-		HER17_RS21450	0.51	-0.6
4,809,799	+		HER17_RS21450	0.62	-0.5
4,809,802	+		HER17_RS21450	0.62	+0.3
4,809,910	+		HER17_RS21450	0.70	-0.3
4,809,963	-		HER17_RS21450	0.74	+0.1
4,809,963	-		HER17_RS21450	0.74	-0.6
4,809,963	-		HER17_RS21450	0.74	+0.5
4,809,963	-		HER17_RS21450	0.74	+0.4
4,809,967	+		HER17_RS21450	0.74	-2.0
4,809,968	-		HER17_RS21450	0.74	+0.0
4,809,968	-		HER17_RS21450	0.74	-0.7
4,809,975	+		HER17_RS21450	0.75	-0.8
4,809,975	+		HER17_RS21450	0.75	-0.6
4,809,976	-		HER17_RS21450	0.75	-0.9
4,809,976	-		HER17_RS21450	0.75	-0.5
4,809,976	-		HER17_RS21450	0.75	+0.6
4,810,015	+		HER17_RS21450	0.77	-1.4
4,810,015	+		HER17_RS21450	0.77	+0.3
4,810,015	+		HER17_RS21450	0.77	+1.4
4,810,015	+		HER17_RS21450	0.77	+0.3
4,810,016	-		HER17_RS21450	0.78	-1.1
4,810,016	-		HER17_RS21450	0.78	-0.5
4,810,016	-		HER17_RS21450	0.78	+0.7
4,810,016	-		HER17_RS21450	0.78	-1.0
4,810,016	-		HER17_RS21450	0.78	+0.9
4,810,071	+		HER17_RS21450	0.82	-1.0
4,810,071	+		HER17_RS21450	0.82	-0.3
4,810,071	+		HER17_RS21450	0.82	+0.2
4,810,071	+		HER17_RS21450	0.82	-1.3
4,810,071	+		HER17_RS21450	0.82	-0.2
4,810,071	+		HER17_RS21450	0.82	+0.7
4,810,072	-		HER17_RS21450	0.82	-0.9
4,810,072	-		HER17_RS21450	0.82	-0.8
4,810,072	-		HER17_RS21450	0.82	+1.0
4,810,084	+		HER17_RS21450	0.82	+1.1
4,810,085	-		HER17_RS21450	0.83	+0.3
4,810,108	+		HER17_RS21450	0.84	-0.1
4,810,109	-		HER17_RS21450	0.84	-0.2
4,810,111	+		HER17_RS21450	0.84	+0.5
4,810,112	-		HER17_RS21450	0.84	-0.1
4,810,112	-		HER17_RS21450	0.84	+0.1
4,810,112	-		HER17_RS21450	0.84	-0.0
4,810,112	-		HER17_RS21450	0.84	+0.4
4,810,125	+		HER17_RS21450	0.85	+0.2
4,810,125	+		HER17_RS21450	0.85	+0.7
4,810,125	+		HER17_RS21450	0.85	+0.1
4,810,156	+		HER17_RS21450	0.88	-0.1
4,810,158	+		HER17_RS21450	0.88	-0.5
4,810,159	-		HER17_RS21450	0.88	-0.6
4,810,159	-		HER17_RS21450	0.88	-0.4
4,810,235	+				-0.7
4,810,236	-				-0.5
4,810,249	-				+0.2
4,810,255	+				+1.0
4,810,255	+				+0.3
4,810,255	+				+0.2
4,810,255	+				-0.2
4,810,255	+				+0.2
4,810,255	+				-0.6
4,810,255	+				-0.5
4,810,256	-				+1.1
4,810,256	-				-0.5
4,810,257	+				+0.4
4,810,272	+				-0.1
4,810,272	+				-0.0
4,810,272	+				+0.0
4,810,272	+				+0.2
4,810,272	+				-0.2
4,810,272	+				+0.9
4,810,273	-				-0.6
4,810,279	-				+0.5
4,810,279	-				-0.8
4,810,324	+				-0.9
4,810,324	+				+0.4
4,810,325	-				-0.7
4,810,325	-				+0.5
4,810,325	-				-0.6
4,810,325	-				-0.4
4,810,325	-				+1.0
4,810,421	+				+0.4
4,810,556	-		HER17_RS21455	0.49	+0.0
4,810,556	-		HER17_RS21455	0.49	+0.0
4,810,569	-		HER17_RS21455	0.57	+0.7
4,810,569	-		HER17_RS21455	0.57	-0.8
4,810,574	+		HER17_RS21455	0.60	+1.3
4,810,574	+		HER17_RS21455	0.60	-0.2
4,810,574	+		HER17_RS21455	0.60	+0.1
4,810,574	+		HER17_RS21455	0.60	-0.3
4,810,574	+		HER17_RS21455	0.60	-0.0
4,810,575	-		HER17_RS21455	0.60	+0.1
4,810,575	-		HER17_RS21455	0.60	-0.2
4,810,575	-		HER17_RS21455	0.60	+0.8
4,810,575	-		HER17_RS21455	0.60	+0.3
4,810,575	-		HER17_RS21455	0.60	+0.2
4,810,600	-		HER17_RS21455	0.75	+0.5
4,810,600	-		HER17_RS21455	0.75	+0.5
4,810,616	+		HER17_RS21455	0.84	+1.3
4,810,617	-		HER17_RS21455	0.85	+0.4
4,810,617	-		HER17_RS21455	0.85	+0.3
4,810,647	+				-0.1
4,810,647	+				-0.7
4,810,647	+				-0.3
4,810,648	-				+0.3
4,810,648	-				-0.1
4,810,648	-				-0.5
4,810,648	-				+0.1
4,810,648	-				+0.5
4,810,669	+				+0.7
4,810,669	+				+0.6
4,810,669	+				-1.5
4,810,690	+				-1.2
4,810,690	+				-0.1
4,810,690	+				-1.1
4,810,690	+				-0.5
4,810,691	-				-0.3
4,810,691	-				+0.1
4,810,691	-				-0.3
4,810,759	+		HER17_RS21460	0.20	+0.1
4,810,760	-		HER17_RS21460	0.21	+0.4
4,810,967	+		HER17_RS21460	0.58	-0.4
4,811,020	+		HER17_RS21460	0.67	+0.5
4,811,096	-		HER17_RS21460	0.81	+1.6
4,811,200	+				-0.9
4,811,200	+				-0.1
4,811,200	+				-0.1
4,811,201	-				+1.2
4,811,201	-				-0.8
4,811,201	-				+0.6
4,811,203	+				-0.5
4,811,203	+				+0.4
4,811,203	+				+1.7
4,811,203	+				+0.2
4,811,204	-				+0.7
4,811,204	-				+0.4
4,811,204	-				-0.2
4,811,216	+				-0.3
4,811,217	-				-0.3
4,811,224	+				-0.7
4,811,224	+				-0.4
4,811,224	+				+0.1
4,811,224	+				+0.1
4,811,224	+				-0.6
4,811,224	+				+0.7
4,811,224	+				-0.0
4,811,224	+				+0.3
4,811,224	+				+0.4
4,811,224	+				-0.1
4,811,224	+				+0.1
4,811,224	+				+0.4
4,811,224	+				-0.9
4,811,224	+				-0.1
4,811,225	-				-0.4
4,811,225	-				+0.1
4,811,225	-				-0.8
4,811,225	-				+0.1
4,811,225	-				-0.2
4,811,225	-				-1.3
4,811,225	-				+0.5
4,811,225	-				+0.6
4,811,225	-				-1.6
4,811,226	+				-1.0
4,811,227	-				-1.3
4,811,227	-				-0.3
4,811,227	-				-0.5
4,811,227	-				+0.5
4,811,227	-				+0.0
4,811,227	-				-0.0
4,811,227	-				+0.5
4,811,247	+				-0.9
4,811,247	+				-0.2
4,811,333	+				+1.0
4,811,333	+				+0.1
4,811,334	-				-0.9
4,811,334	-				+0.3
4,811,345	+				+0.1
4,811,346	-				-0.9
4,811,346	-				-0.5
4,811,355	+				+0.3
4,811,355	+				+0.1
4,811,356	-				+0.3
4,811,356	-				+0.7
4,811,361	+				-1.8
4,811,361	+				-0.2
4,811,361	+				+0.6
4,811,361	+				+0.3
4,811,362	-				-0.8
4,811,362	-				+0.3
4,811,362	-				+0.1
4,811,363	+				+0.2
4,811,363	+				-2.1
4,811,363	+				-1.2
4,811,390	+				-0.3
4,812,037	+				+0.6
4,812,060	+				+0.0
4,812,060	+				+0.9
4,812,155	+				-0.2
4,812,167	-				-0.8
4,812,197	+				-0.4