Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17765

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,008,809	+				+0.8
4,008,810	-				-0.1
4,008,812	+				+0.1
4,008,812	+				-1.0
4,008,812	+				-0.4
4,008,812	+				-1.4
4,008,812	+				-0.2
4,008,812	+				+1.1
4,008,813	-				-0.8
4,008,813	-				-1.2
4,008,813	-				+0.1
4,008,813	-				-0.3
4,008,888	+				+0.2
4,008,888	+				-0.2
4,008,888	+				+0.5
4,008,888	+				+1.0
4,008,888	+				-0.1
4,008,888	+				-0.7
4,008,888	+				-1.1
4,008,888	+				+0.4
4,008,888	+				+0.3
4,008,888	+				-1.0
4,008,889	-				+1.3
4,008,889	-				-1.2
4,008,889	-				+0.2
4,008,889	-				-3.5
4,008,889	-				+0.5
4,008,889	-				-0.3
4,008,889	-				+0.3
4,008,889	-				+1.3
4,008,890	+				+0.8
4,008,890	+				+0.1
4,008,890	+				-1.3
4,008,890	+				+0.7
4,008,891	-				-1.3
4,008,891	-				+1.4
4,008,892	+				+0.8
4,008,893	-				+0.4
4,008,949	+				-0.1
4,008,949	+				+0.1
4,008,949	+				-0.6
4,008,958	-				-1.4
4,008,958	-				+0.2
4,008,958	-				-1.2
4,008,958	-				-0.2
4,008,958	-				-0.6
4,009,008	+				+1.1
4,009,013	+				-0.5
4,009,015	+				+0.0
4,009,015	+				-0.7
4,009,070	+				-0.3
4,009,078	+				+1.0
4,009,079	-				+0.5
4,009,101	+				-0.9
4,009,101	+				+0.3
4,009,105	-				+0.5
4,009,119	-				+0.8
4,009,150	+				-0.9
4,009,150	+				+0.0
4,009,151	-				-1.4
4,009,184	+				-0.2
4,009,210	+		HER17_RS17760	0.13	+0.4
4,009,211	-		HER17_RS17760	0.13	+0.8
4,009,211	-		HER17_RS17760	0.13	+1.4
4,009,214	+		HER17_RS17760	0.14	+0.8
4,009,214	+		HER17_RS17760	0.14	-0.1
4,009,215	-		HER17_RS17760	0.14	+0.1
4,009,260	+		HER17_RS17760	0.25	+0.8
4,009,261	-		HER17_RS17760	0.25	-0.3
4,009,266	+		HER17_RS17760	0.27	+0.5
4,009,267	-		HER17_RS17760	0.27	+0.5
4,009,267	-		HER17_RS17760	0.27	+0.2
4,009,267	-		HER17_RS17760	0.27	+0.4
4,009,267	-		HER17_RS17760	0.27	+0.4
4,009,281	+		HER17_RS17760	0.30	-0.6
4,009,416	+		HER17_RS17760	0.64	+0.2
4,009,417	-		HER17_RS17760	0.64	-0.1
4,009,516	-		HER17_RS17760	0.89	+0.9
4,009,516	-		HER17_RS17760	0.89	-0.9
4,009,516	-		HER17_RS17760	0.89	-0.8
4,009,559	-				+1.5
4,009,567	-				-0.3
4,009,663	+				+0.4
4,009,683	+				+0.5
4,009,683	+				-0.2
4,009,683	+				+0.8
4,009,684	-				+0.3
4,009,684	-				+0.0
4,009,684	-				-0.0
4,009,687	+				-0.6
4,009,701	+				-0.5
4,009,764	+				-0.4
4,009,765	-				-1.5
4,009,765	-				-0.4
4,009,765	-				-0.9
4,009,837	+				+0.1
4,009,911	-		HER17_RS17765	0.17	+0.0
4,009,969	-		HER17_RS17765	0.23	-0.2
4,009,969	-		HER17_RS17765	0.23	+1.3
4,009,993	+		HER17_RS17765	0.25	+0.4
4,009,993	+		HER17_RS17765	0.25	-0.1
4,010,038	+		HER17_RS17765	0.30	+1.1
4,010,038	+		HER17_RS17765	0.30	+0.3
4,010,040	+		HER17_RS17765	0.30	+0.3
4,010,102	+		HER17_RS17765	0.37	+0.0
4,010,103	-		HER17_RS17765	0.37	-0.4
4,010,103	-		HER17_RS17765	0.37	-0.0
4,010,103	-		HER17_RS17765	0.37	-1.3
4,010,116	-		HER17_RS17765	0.38	+0.2
4,010,116	-		HER17_RS17765	0.38	+1.0
4,010,116	-		HER17_RS17765	0.38	+1.8
4,010,118	+		HER17_RS17765	0.38	-1.8
4,010,188	+		HER17_RS17765	0.46	-0.3
4,010,190	+		HER17_RS17765	0.46	-0.4
4,010,191	-		HER17_RS17765	0.46	+0.2
4,010,191	-		HER17_RS17765	0.46	+0.3
4,010,191	-		HER17_RS17765	0.46	+0.3
4,010,191	-		HER17_RS17765	0.46	+2.2
4,010,217	-		HER17_RS17765	0.49	-0.8
4,010,243	-		HER17_RS17765	0.51	-0.0
4,010,243	-		HER17_RS17765	0.51	+0.2
4,010,270	-		HER17_RS17765	0.54	+0.2
4,010,284	-		HER17_RS17765	0.56	+2.0
4,010,319	+		HER17_RS17765	0.59	-0.3
4,010,319	+		HER17_RS17765	0.59	+0.2
4,010,320	-		HER17_RS17765	0.59	-2.4
4,010,320	-		HER17_RS17765	0.59	-0.0
4,010,320	-		HER17_RS17765	0.59	+1.2
4,010,320	-		HER17_RS17765	0.59	-0.0
4,010,333	+		HER17_RS17765	0.61	-1.2
4,010,419	+		HER17_RS17765	0.70	-1.4
4,010,451	+		HER17_RS17765	0.73	+0.4
4,010,457	+		HER17_RS17765	0.74	+0.1
4,010,458	-		HER17_RS17765	0.74	+1.2
4,010,458	-		HER17_RS17765	0.74	+0.2
4,010,458	-		HER17_RS17765	0.74	-0.8
4,010,476	+		HER17_RS17765	0.76	+0.3
4,010,476	+		HER17_RS17765	0.76	+1.8
4,010,476	+		HER17_RS17765	0.76	+0.9
4,010,477	-		HER17_RS17765	0.76	+1.3
4,010,477	-		HER17_RS17765	0.76	-1.2
4,010,477	-		HER17_RS17765	0.76	+1.2
4,010,477	-		HER17_RS17765	0.76	-0.5
4,010,477	-		HER17_RS17765	0.76	-0.2
4,010,490	+		HER17_RS17765	0.77	-0.0
4,010,491	-		HER17_RS17765	0.77	-0.2
4,010,491	-		HER17_RS17765	0.77	+0.3
4,010,506	+		HER17_RS17765	0.79	-1.1
4,010,547	-		HER17_RS17765	0.83	-0.1
4,010,547	-		HER17_RS17765	0.83	-0.9
4,010,547	-		HER17_RS17765	0.83	-0.1
4,010,547	-		HER17_RS17765	0.83	+0.5
4,010,682	+				-0.5
4,010,683	-				+0.2
4,010,739	+				+0.2
4,010,740	-				-0.9
4,010,790	+				-0.6
4,010,921	-		HER17_RS17770	0.28	-0.2
4,010,921	-		HER17_RS17770	0.28	+1.3
4,010,956	+		HER17_RS17770	0.33	-0.6
4,010,959	-		HER17_RS17770	0.34	+0.4
4,010,963	+		HER17_RS17770	0.34	+0.9
4,010,964	-		HER17_RS17770	0.35	-0.3
4,010,964	-		HER17_RS17770	0.35	+1.2
4,011,062	+		HER17_RS17770	0.49	-0.1
4,011,062	+		HER17_RS17770	0.49	-0.9
4,011,070	+		HER17_RS17770	0.50	-0.1
4,011,070	+		HER17_RS17770	0.50	+0.1
4,011,071	-		HER17_RS17770	0.50	-1.2
4,011,073	+		HER17_RS17770	0.50	-0.9
4,011,074	-		HER17_RS17770	0.51	-0.2
4,011,074	-		HER17_RS17770	0.51	-0.2
4,011,112	-		HER17_RS17770	0.56	+0.4
4,011,112	-		HER17_RS17770	0.56	-0.9
4,011,147	+		HER17_RS17770	0.61	+0.5
4,011,208	+		HER17_RS17770	0.70	+0.2
4,011,208	+		HER17_RS17770	0.70	-0.0
4,011,209	-		HER17_RS17770	0.70	-0.1
4,011,234	+		HER17_RS17770	0.74	+0.4
4,011,235	-		HER17_RS17770	0.74	+0.3
4,011,235	-		HER17_RS17770	0.74	+1.0
4,011,247	+		HER17_RS17770	0.76	-0.6
4,011,248	-		HER17_RS17770	0.76	+0.1
4,011,248	-		HER17_RS17770	0.76	-0.8
4,011,325	-		HER17_RS17770	0.87	-0.4
4,011,427	-				-1.1
4,011,448	+				-0.2
4,011,449	-				-0.4
4,011,449	-				-0.2
4,011,449	-				-0.0
4,011,449	-				+0.7
4,011,476	+				+0.6
4,011,477	-				-0.1
4,011,479	+				+1.2
4,011,479	+				-0.1
4,011,479	+				-0.5
4,011,479	+				+0.7
4,011,479	+				-0.3
4,011,597	-		HER17_RS17775	0.19	-2.0
4,011,607	-		HER17_RS17775	0.20	-0.2
4,011,607	-		HER17_RS17775	0.20	+0.1