Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05985

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS05975 and HER17_RS05980 are separated by 84 nucleotidesHER17_RS05980 and HER17_RS05985 are separated by 125 nucleotidesHER17_RS05985 and HER17_RS05990 overlap by 4 nucleotides HER17_RS05975: HER17_RS05975 - methyl-accepting chemotaxis protein, at 1,328,808 to 1,330,475 _RS05975 HER17_RS05980: HER17_RS05980 - hypothetical protein, at 1,330,560 to 1,330,883 _RS05980 HER17_RS05985: HER17_RS05985 - ABC transporter ATP-binding protein, at 1,331,009 to 1,331,809 _RS05985 HER17_RS05990: HER17_RS05990 - iron ABC transporter permease, at 1,331,806 to 1,332,888 _RS05990 Position (kb) 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1at 1330.106 kb on - strand, within HER17_RS05975at 1330.157 kb on - strand, within HER17_RS05975at 1330.311 kb on - strandat 1330.352 kb on + strandat 1330.517 kb on - strandat 1330.519 kb on - strandat 1330.519 kb on - strandat 1330.555 kb on - strandat 1330.555 kb on - strandat 1330.609 kb on + strand, within HER17_RS05980at 1330.628 kb on + strand, within HER17_RS05980at 1330.628 kb on + strand, within HER17_RS05980at 1330.628 kb on + strand, within HER17_RS05980at 1330.628 kb on + strand, within HER17_RS05980at 1330.628 kb on + strand, within HER17_RS05980at 1330.629 kb on - strand, within HER17_RS05980at 1330.629 kb on - strand, within HER17_RS05980at 1330.629 kb on - strand, within HER17_RS05980at 1330.629 kb on - strand, within HER17_RS05980at 1330.643 kb on + strand, within HER17_RS05980at 1330.643 kb on + strand, within HER17_RS05980at 1330.644 kb on - strand, within HER17_RS05980at 1330.651 kb on + strand, within HER17_RS05980at 1330.652 kb on - strand, within HER17_RS05980at 1330.683 kb on + strand, within HER17_RS05980at 1330.683 kb on + strand, within HER17_RS05980at 1330.691 kb on + strand, within HER17_RS05980at 1330.707 kb on - strand, within HER17_RS05980at 1330.718 kb on + strand, within HER17_RS05980at 1330.762 kb on - strand, within HER17_RS05980at 1330.773 kb on + strand, within HER17_RS05980at 1330.773 kb on + strand, within HER17_RS05980at 1330.773 kb on + strand, within HER17_RS05980at 1330.773 kb on + strand, within HER17_RS05980at 1330.774 kb on - strand, within HER17_RS05980at 1330.774 kb on - strand, within HER17_RS05980at 1330.774 kb on - strand, within HER17_RS05980at 1330.774 kb on - strand, within HER17_RS05980at 1330.798 kb on + strand, within HER17_RS05980at 1330.798 kb on + strand, within HER17_RS05980at 1330.798 kb on + strand, within HER17_RS05980at 1330.799 kb on - strand, within HER17_RS05980at 1330.856 kb on + strandat 1330.894 kb on + strandat 1330.897 kb on + strandat 1330.898 kb on - strandat 1330.898 kb on - strandat 1330.898 kb on - strandat 1330.961 kb on - strandat 1330.965 kb on + strandat 1330.997 kb on - strandat 1330.999 kb on - strandat 1331.010 kb on + strandat 1331.010 kb on + strandat 1331.010 kb on + strandat 1331.011 kb on - strandat 1331.011 kb on - strandat 1331.011 kb on - strandat 1331.094 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.174 kb on + strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.175 kb on - strand, within HER17_RS05985at 1331.217 kb on - strand, within HER17_RS05985at 1331.283 kb on + strand, within HER17_RS05985at 1331.284 kb on - strand, within HER17_RS05985at 1331.397 kb on + strand, within HER17_RS05985at 1331.397 kb on + strand, within HER17_RS05985at 1331.398 kb on - strand, within HER17_RS05985at 1331.423 kb on + strand, within HER17_RS05985at 1331.553 kb on + strand, within HER17_RS05985at 1331.554 kb on - strand, within HER17_RS05985at 1331.554 kb on - strand, within HER17_RS05985at 1331.669 kb on - strand, within HER17_RS05985at 1331.783 kb on + strandat 1331.784 kb on - strandat 1331.809 kb on + strandat 1331.809 kb on + strandat 1331.809 kb on + strandat 1331.809 kb on + strandat 1331.810 kb on - strandat 1331.969 kb on + strand, within HER17_RS05990at 1331.969 kb on + strand, within HER17_RS05990at 1331.969 kb on + strand, within HER17_RS05990at 1331.969 kb on + strand, within HER17_RS05990at 1331.998 kb on - strand, within HER17_RS05990at 1331.998 kb on - strand, within HER17_RS05990at 1332.072 kb on + strand, within HER17_RS05990at 1332.316 kb on + strand, within HER17_RS05990at 1332.372 kb on + strand, within HER17_RS05990at 1332.372 kb on + strand, within HER17_RS05990at 1332.373 kb on - strand, within HER17_RS05990at 1332.373 kb on - strand, within HER17_RS05990at 1332.406 kb on + strand, within HER17_RS05990at 1332.406 kb on + strand, within HER17_RS05990at 1332.407 kb on - strand, within HER17_RS05990at 1332.432 kb on + strand, within HER17_RS05990at 1332.432 kb on + strand, within HER17_RS05990

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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1,330,106 - HER17_RS05975 0.78 -0.8
1,330,157 - HER17_RS05975 0.81 +0.2
1,330,311 - +0.2
1,330,352 + +0.3
1,330,517 - -0.0
1,330,519 - +0.6
1,330,519 - -0.1
1,330,555 - +0.3
1,330,555 - +0.4
1,330,609 + HER17_RS05980 0.15 -0.2
1,330,628 + HER17_RS05980 0.21 +0.2
1,330,628 + HER17_RS05980 0.21 -1.9
1,330,628 + HER17_RS05980 0.21 +1.5
1,330,628 + HER17_RS05980 0.21 +0.2
1,330,628 + HER17_RS05980 0.21 +0.1
1,330,629 - HER17_RS05980 0.21 +1.2
1,330,629 - HER17_RS05980 0.21 -2.2
1,330,629 - HER17_RS05980 0.21 +0.6
1,330,629 - HER17_RS05980 0.21 +0.0
1,330,643 + HER17_RS05980 0.26 -0.6
1,330,643 + HER17_RS05980 0.26 -0.0
1,330,644 - HER17_RS05980 0.26 +0.2
1,330,651 + HER17_RS05980 0.28 -0.2
1,330,652 - HER17_RS05980 0.28 +0.1
1,330,683 + HER17_RS05980 0.38 -1.5
1,330,683 + HER17_RS05980 0.38 +1.2
1,330,691 + HER17_RS05980 0.40 +0.3
1,330,707 - HER17_RS05980 0.45 -0.0
1,330,718 + HER17_RS05980 0.49 -0.1
1,330,762 - HER17_RS05980 0.62 +1.2
1,330,773 + HER17_RS05980 0.66 -0.7
1,330,773 + HER17_RS05980 0.66 -0.5
1,330,773 + HER17_RS05980 0.66 -0.4
1,330,773 + HER17_RS05980 0.66 +1.0
1,330,774 - HER17_RS05980 0.66 +0.4
1,330,774 - HER17_RS05980 0.66 +1.3
1,330,774 - HER17_RS05980 0.66 +0.0
1,330,774 - HER17_RS05980 0.66 -0.0
1,330,798 + HER17_RS05980 0.73 -0.7
1,330,798 + HER17_RS05980 0.73 -0.1
1,330,798 + HER17_RS05980 0.73 -0.6
1,330,799 - HER17_RS05980 0.74 -1.7
1,330,856 + -0.8
1,330,894 + +0.5
1,330,897 + +1.3
1,330,898 - +0.3
1,330,898 - -0.0
1,330,898 - -0.2
1,330,961 - +0.5
1,330,965 + -0.2
1,330,997 - -1.4
1,330,999 - -0.8
1,331,010 + -0.2
1,331,010 + -0.4
1,331,010 + -0.4
1,331,011 - +0.8
1,331,011 - -0.8
1,331,011 - +1.1
1,331,094 + HER17_RS05985 0.11 -0.1
1,331,174 + HER17_RS05985 0.21 +1.1
1,331,174 + HER17_RS05985 0.21 -0.9
1,331,174 + HER17_RS05985 0.21 -0.8
1,331,174 + HER17_RS05985 0.21 -0.3
1,331,174 + HER17_RS05985 0.21 +0.6
1,331,174 + HER17_RS05985 0.21 -0.7
1,331,175 - HER17_RS05985 0.21 -0.8
1,331,175 - HER17_RS05985 0.21 +0.8
1,331,175 - HER17_RS05985 0.21 -0.8
1,331,175 - HER17_RS05985 0.21 +0.2
1,331,175 - HER17_RS05985 0.21 -1.1
1,331,175 - HER17_RS05985 0.21 +0.0
1,331,175 - HER17_RS05985 0.21 -0.2
1,331,175 - HER17_RS05985 0.21 -0.1
1,331,175 - HER17_RS05985 0.21 +0.6
1,331,175 - HER17_RS05985 0.21 -0.4
1,331,217 - HER17_RS05985 0.26 -0.5
1,331,283 + HER17_RS05985 0.34 -0.3
1,331,284 - HER17_RS05985 0.34 +1.5
1,331,397 + HER17_RS05985 0.48 -1.0
1,331,397 + HER17_RS05985 0.48 -0.6
1,331,398 - HER17_RS05985 0.49 -0.5
1,331,423 + HER17_RS05985 0.52 +1.5
1,331,553 + HER17_RS05985 0.68 -0.6
1,331,554 - HER17_RS05985 0.68 -0.8
1,331,554 - HER17_RS05985 0.68 +0.0
1,331,669 - HER17_RS05985 0.82 +0.6
1,331,783 + -0.7
1,331,784 - +0.4
1,331,809 + -0.1
1,331,809 + -1.1
1,331,809 + +0.8
1,331,809 + -2.9
1,331,810 - +0.1
1,331,969 + HER17_RS05990 0.15 +0.8
1,331,969 + HER17_RS05990 0.15 -0.5
1,331,969 + HER17_RS05990 0.15 -0.2
1,331,969 + HER17_RS05990 0.15 +0.6
1,331,998 - HER17_RS05990 0.18 +0.7
1,331,998 - HER17_RS05990 0.18 -1.8
1,332,072 + HER17_RS05990 0.25 -1.3
1,332,316 + HER17_RS05990 0.47 +0.2
1,332,372 + HER17_RS05990 0.52 +0.1
1,332,372 + HER17_RS05990 0.52 +0.2
1,332,373 - HER17_RS05990 0.52 -1.1
1,332,373 - HER17_RS05990 0.52 -1.6
1,332,406 + HER17_RS05990 0.55 +0.5
1,332,406 + HER17_RS05990 0.55 +1.5
1,332,407 - HER17_RS05990 0.55 -0.5
1,332,432 + HER17_RS05990 0.58 -0.6
1,332,432 + HER17_RS05990 0.58 +1.4

Or see this region's nucleotide sequence