Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04930

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04925 and HER17_RS04930 are separated by 9 nucleotidesHER17_RS04930 and HER17_RS04935 are separated by 80 nucleotidesHER17_RS04935 and HER17_RS04940 are separated by 158 nucleotides HER17_RS04925: HER17_RS04925 - type VI secretion system tip protein VgrG, at 1,114,666 to 1,116,703 _RS04925 HER17_RS04930: HER17_RS04930 - PAAR domain-containing protein, at 1,116,713 to 1,118,083 _RS04930 HER17_RS04935: HER17_RS04935 - hypothetical protein, at 1,118,164 to 1,118,862 _RS04935 HER17_RS04940: HER17_RS04940 - DUF4123 domain-containing protein, at 1,119,021 to 1,119,977 _RS04940 Position (kb) 1116 1117 1118 1119Strain fitness (log2 ratio) -2 -1 0 1at 1116.041 kb on + strand, within HER17_RS04925at 1116.041 kb on + strand, within HER17_RS04925at 1116.042 kb on - strand, within HER17_RS04925at 1116.042 kb on - strand, within HER17_RS04925at 1116.042 kb on - strand, within HER17_RS04925at 1116.042 kb on - strand, within HER17_RS04925at 1116.058 kb on + strand, within HER17_RS04925at 1116.058 kb on + strand, within HER17_RS04925at 1116.059 kb on - strand, within HER17_RS04925at 1116.059 kb on - strand, within HER17_RS04925at 1116.091 kb on + strand, within HER17_RS04925at 1116.092 kb on - strand, within HER17_RS04925at 1116.170 kb on - strand, within HER17_RS04925at 1116.170 kb on - strand, within HER17_RS04925at 1116.170 kb on - strand, within HER17_RS04925at 1116.170 kb on - strand, within HER17_RS04925at 1116.170 kb on - strand, within HER17_RS04925at 1116.181 kb on + strand, within HER17_RS04925at 1116.181 kb on + strand, within HER17_RS04925at 1116.182 kb on - strand, within HER17_RS04925at 1116.182 kb on - strand, within HER17_RS04925at 1116.184 kb on + strand, within HER17_RS04925at 1116.185 kb on - strand, within HER17_RS04925at 1116.340 kb on + strand, within HER17_RS04925at 1116.485 kb on + strand, within HER17_RS04925at 1116.486 kb on - strand, within HER17_RS04925at 1116.486 kb on - strand, within HER17_RS04925at 1116.649 kb on + strandat 1116.673 kb on + strandat 1116.674 kb on - strandat 1116.712 kb on + strandat 1116.712 kb on + strandat 1116.712 kb on + strandat 1116.713 kb on - strandat 1116.713 kb on - strandat 1116.713 kb on - strandat 1116.803 kb on - strandat 1116.811 kb on + strandat 1116.827 kb on - strandat 1116.827 kb on - strandat 1116.843 kb on + strandat 1116.844 kb on - strandat 1117.019 kb on + strand, within HER17_RS04930at 1117.172 kb on - strand, within HER17_RS04930at 1117.182 kb on - strand, within HER17_RS04930at 1117.258 kb on + strand, within HER17_RS04930at 1117.259 kb on - strand, within HER17_RS04930at 1117.259 kb on - strand, within HER17_RS04930at 1117.259 kb on - strand, within HER17_RS04930at 1117.262 kb on - strand, within HER17_RS04930at 1117.270 kb on + strand, within HER17_RS04930at 1117.270 kb on + strand, within HER17_RS04930at 1117.271 kb on - strand, within HER17_RS04930at 1117.271 kb on - strand, within HER17_RS04930at 1117.276 kb on - strand, within HER17_RS04930at 1117.276 kb on - strand, within HER17_RS04930at 1117.296 kb on - strand, within HER17_RS04930at 1117.296 kb on - strand, within HER17_RS04930at 1117.296 kb on - strand, within HER17_RS04930at 1117.296 kb on - strand, within HER17_RS04930at 1117.301 kb on + strand, within HER17_RS04930at 1117.337 kb on - strand, within HER17_RS04930at 1117.381 kb on + strand, within HER17_RS04930at 1117.381 kb on + strand, within HER17_RS04930at 1117.381 kb on + strand, within HER17_RS04930at 1117.381 kb on + strand, within HER17_RS04930at 1117.381 kb on + strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.382 kb on - strand, within HER17_RS04930at 1117.411 kb on + strand, within HER17_RS04930at 1117.412 kb on - strand, within HER17_RS04930at 1117.565 kb on + strand, within HER17_RS04930at 1117.566 kb on - strand, within HER17_RS04930at 1117.576 kb on + strand, within HER17_RS04930at 1117.580 kb on + strand, within HER17_RS04930at 1117.580 kb on + strand, within HER17_RS04930at 1117.581 kb on - strand, within HER17_RS04930at 1117.691 kb on + strand, within HER17_RS04930at 1117.694 kb on - strand, within HER17_RS04930at 1117.694 kb on - strand, within HER17_RS04930at 1117.699 kb on + strand, within HER17_RS04930at 1117.700 kb on - strand, within HER17_RS04930at 1117.700 kb on - strand, within HER17_RS04930at 1117.718 kb on - strand, within HER17_RS04930at 1117.723 kb on + strand, within HER17_RS04930at 1117.724 kb on - strand, within HER17_RS04930at 1117.774 kb on - strand, within HER17_RS04930at 1117.800 kb on + strand, within HER17_RS04930at 1117.800 kb on + strand, within HER17_RS04930at 1117.801 kb on - strand, within HER17_RS04930at 1117.803 kb on + strand, within HER17_RS04930at 1117.901 kb on - strand, within HER17_RS04930at 1117.954 kb on + strandat 1117.954 kb on + strandat 1117.954 kb on + strandat 1117.954 kb on + strandat 1117.955 kb on - strandat 1117.955 kb on - strandat 1118.003 kb on - strandat 1118.058 kb on + strandat 1118.065 kb on + strandat 1118.065 kb on + strandat 1118.080 kb on - strandat 1118.080 kb on - strandat 1118.081 kb on + strandat 1118.081 kb on + strandat 1118.081 kb on + strandat 1118.082 kb on - strandat 1118.082 kb on - strandat 1118.100 kb on + strandat 1118.101 kb on - strandat 1118.101 kb on - strandat 1118.132 kb on + strandat 1118.132 kb on + strandat 1118.163 kb on + strandat 1118.163 kb on + strandat 1118.163 kb on + strandat 1118.164 kb on - strandat 1118.214 kb on + strandat 1118.274 kb on + strand, within HER17_RS04935at 1118.275 kb on - strand, within HER17_RS04935at 1118.317 kb on + strand, within HER17_RS04935at 1118.377 kb on + strand, within HER17_RS04935at 1118.377 kb on + strand, within HER17_RS04935at 1118.377 kb on + strand, within HER17_RS04935at 1118.378 kb on - strand, within HER17_RS04935at 1118.378 kb on - strand, within HER17_RS04935at 1118.378 kb on - strand, within HER17_RS04935at 1118.378 kb on - strand, within HER17_RS04935at 1118.378 kb on - strand, within HER17_RS04935at 1118.379 kb on + strand, within HER17_RS04935at 1118.448 kb on + strand, within HER17_RS04935at 1118.448 kb on + strand, within HER17_RS04935at 1118.504 kb on + strand, within HER17_RS04935at 1118.508 kb on + strand, within HER17_RS04935at 1118.508 kb on + strand, within HER17_RS04935at 1118.508 kb on + strand, within HER17_RS04935at 1118.508 kb on + strand, within HER17_RS04935at 1118.509 kb on - strand, within HER17_RS04935at 1118.514 kb on + strand, within HER17_RS04935at 1118.514 kb on + strand, within HER17_RS04935at 1118.514 kb on + strand, within HER17_RS04935at 1118.515 kb on - strand, within HER17_RS04935at 1118.608 kb on + strand, within HER17_RS04935at 1118.608 kb on + strand, within HER17_RS04935at 1118.629 kb on + strand, within HER17_RS04935at 1118.629 kb on + strand, within HER17_RS04935at 1118.667 kb on + strand, within HER17_RS04935at 1118.667 kb on + strand, within HER17_RS04935at 1118.667 kb on + strand, within HER17_RS04935at 1118.668 kb on - strand, within HER17_RS04935at 1118.668 kb on - strand, within HER17_RS04935at 1118.670 kb on + strand, within HER17_RS04935at 1118.673 kb on + strand, within HER17_RS04935at 1118.673 kb on + strand, within HER17_RS04935at 1118.674 kb on - strand, within HER17_RS04935at 1118.674 kb on - strand, within HER17_RS04935at 1118.677 kb on + strand, within HER17_RS04935at 1118.686 kb on - strand, within HER17_RS04935at 1118.694 kb on + strand, within HER17_RS04935at 1118.730 kb on + strand, within HER17_RS04935at 1118.730 kb on + strand, within HER17_RS04935at 1118.731 kb on - strand, within HER17_RS04935at 1118.731 kb on - strand, within HER17_RS04935at 1118.766 kb on - strand, within HER17_RS04935at 1118.771 kb on + strand, within HER17_RS04935at 1118.937 kb on - strandat 1118.937 kb on - strandat 1119.007 kb on - strandat 1119.016 kb on + strandat 1119.038 kb on + strandat 1119.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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1,116,041 + HER17_RS04925 0.67 +0.6
1,116,041 + HER17_RS04925 0.67 +0.6
1,116,042 - HER17_RS04925 0.68 -0.7
1,116,042 - HER17_RS04925 0.68 +1.6
1,116,042 - HER17_RS04925 0.68 +0.2
1,116,042 - HER17_RS04925 0.68 +1.2
1,116,058 + HER17_RS04925 0.68 +1.0
1,116,058 + HER17_RS04925 0.68 +0.4
1,116,059 - HER17_RS04925 0.68 +0.7
1,116,059 - HER17_RS04925 0.68 +0.4
1,116,091 + HER17_RS04925 0.70 +0.7
1,116,092 - HER17_RS04925 0.70 +0.3
1,116,170 - HER17_RS04925 0.74 -0.2
1,116,170 - HER17_RS04925 0.74 -1.0
1,116,170 - HER17_RS04925 0.74 +0.4
1,116,170 - HER17_RS04925 0.74 -0.0
1,116,170 - HER17_RS04925 0.74 -0.5
1,116,181 + HER17_RS04925 0.74 +0.4
1,116,181 + HER17_RS04925 0.74 +0.3
1,116,182 - HER17_RS04925 0.74 -0.1
1,116,182 - HER17_RS04925 0.74 -0.4
1,116,184 + HER17_RS04925 0.74 -0.4
1,116,185 - HER17_RS04925 0.75 +0.6
1,116,340 + HER17_RS04925 0.82 -0.1
1,116,485 + HER17_RS04925 0.89 -0.1
1,116,486 - HER17_RS04925 0.89 +1.0
1,116,486 - HER17_RS04925 0.89 +0.4
1,116,649 + +0.3
1,116,673 + -0.9
1,116,674 - -0.5
1,116,712 + +0.2
1,116,712 + -1.1
1,116,712 + +0.7
1,116,713 - -1.5
1,116,713 - -0.7
1,116,713 - -0.9
1,116,803 - -0.1
1,116,811 + -0.0
1,116,827 - +0.4
1,116,827 - +1.1
1,116,843 + -1.4
1,116,844 - -1.0
1,117,019 + HER17_RS04930 0.22 +1.6
1,117,172 - HER17_RS04930 0.33 +0.2
1,117,182 - HER17_RS04930 0.34 -0.2
1,117,258 + HER17_RS04930 0.40 -2.0
1,117,259 - HER17_RS04930 0.40 +1.4
1,117,259 - HER17_RS04930 0.40 +0.3
1,117,259 - HER17_RS04930 0.40 +0.3
1,117,262 - HER17_RS04930 0.40 -0.5
1,117,270 + HER17_RS04930 0.41 +0.6
1,117,270 + HER17_RS04930 0.41 -0.4
1,117,271 - HER17_RS04930 0.41 -0.2
1,117,271 - HER17_RS04930 0.41 -0.3
1,117,276 - HER17_RS04930 0.41 +0.3
1,117,276 - HER17_RS04930 0.41 -1.0
1,117,296 - HER17_RS04930 0.43 -0.0
1,117,296 - HER17_RS04930 0.43 -0.9
1,117,296 - HER17_RS04930 0.43 +0.1
1,117,296 - HER17_RS04930 0.43 +0.1
1,117,301 + HER17_RS04930 0.43 +1.1
1,117,337 - HER17_RS04930 0.46 +0.3
1,117,381 + HER17_RS04930 0.49 -0.2
1,117,381 + HER17_RS04930 0.49 +0.1
1,117,381 + HER17_RS04930 0.49 -0.2
1,117,381 + HER17_RS04930 0.49 -0.4
1,117,381 + HER17_RS04930 0.49 -0.1
1,117,382 - HER17_RS04930 0.49 +1.1
1,117,382 - HER17_RS04930 0.49 -0.2
1,117,382 - HER17_RS04930 0.49 -0.1
1,117,382 - HER17_RS04930 0.49 -1.2
1,117,382 - HER17_RS04930 0.49 -0.4
1,117,382 - HER17_RS04930 0.49 -0.5
1,117,382 - HER17_RS04930 0.49 +0.1
1,117,382 - HER17_RS04930 0.49 -1.0
1,117,382 - HER17_RS04930 0.49 +1.0
1,117,411 + HER17_RS04930 0.51 -0.5
1,117,412 - HER17_RS04930 0.51 -0.0
1,117,565 + HER17_RS04930 0.62 +1.6
1,117,566 - HER17_RS04930 0.62 -0.4
1,117,576 + HER17_RS04930 0.63 +0.6
1,117,580 + HER17_RS04930 0.63 +1.6
1,117,580 + HER17_RS04930 0.63 -0.6
1,117,581 - HER17_RS04930 0.63 +0.1
1,117,691 + HER17_RS04930 0.71 +1.2
1,117,694 - HER17_RS04930 0.72 -0.5
1,117,694 - HER17_RS04930 0.72 -0.1
1,117,699 + HER17_RS04930 0.72 -0.3
1,117,700 - HER17_RS04930 0.72 -2.0
1,117,700 - HER17_RS04930 0.72 -0.5
1,117,718 - HER17_RS04930 0.73 -0.6
1,117,723 + HER17_RS04930 0.74 +0.3
1,117,724 - HER17_RS04930 0.74 +0.6
1,117,774 - HER17_RS04930 0.77 -0.5
1,117,800 + HER17_RS04930 0.79 -0.6
1,117,800 + HER17_RS04930 0.79 -1.1
1,117,801 - HER17_RS04930 0.79 -0.7
1,117,803 + HER17_RS04930 0.80 -0.6
1,117,901 - HER17_RS04930 0.87 -0.5
1,117,954 + -0.4
1,117,954 + -0.4
1,117,954 + +0.3
1,117,954 + +0.7
1,117,955 - -0.2
1,117,955 - +0.8
1,118,003 - -0.4
1,118,058 + +0.3
1,118,065 + +0.2
1,118,065 + +0.6
1,118,080 - -0.0
1,118,080 - -0.1
1,118,081 + +0.4
1,118,081 + +0.5
1,118,081 + -0.1
1,118,082 - -0.6
1,118,082 - +0.4
1,118,100 + -0.1
1,118,101 - +0.3
1,118,101 - +0.1
1,118,132 + -0.2
1,118,132 + +1.0
1,118,163 + +0.1
1,118,163 + +0.4
1,118,163 + +0.3
1,118,164 - -1.0
1,118,214 + -0.2
1,118,274 + HER17_RS04935 0.16 +0.5
1,118,275 - HER17_RS04935 0.16 +0.4
1,118,317 + HER17_RS04935 0.22 +0.6
1,118,377 + HER17_RS04935 0.30 +0.6
1,118,377 + HER17_RS04935 0.30 -1.5
1,118,377 + HER17_RS04935 0.30 -0.9
1,118,378 - HER17_RS04935 0.31 -0.4
1,118,378 - HER17_RS04935 0.31 -2.2
1,118,378 - HER17_RS04935 0.31 +0.2
1,118,378 - HER17_RS04935 0.31 +0.5
1,118,378 - HER17_RS04935 0.31 +0.8
1,118,379 + HER17_RS04935 0.31 +0.4
1,118,448 + HER17_RS04935 0.41 -1.0
1,118,448 + HER17_RS04935 0.41 +0.4
1,118,504 + HER17_RS04935 0.49 -0.5
1,118,508 + HER17_RS04935 0.49 +1.4
1,118,508 + HER17_RS04935 0.49 -0.0
1,118,508 + HER17_RS04935 0.49 +0.4
1,118,508 + HER17_RS04935 0.49 -0.6
1,118,509 - HER17_RS04935 0.49 -0.9
1,118,514 + HER17_RS04935 0.50 -2.7
1,118,514 + HER17_RS04935 0.50 -0.3
1,118,514 + HER17_RS04935 0.50 -0.6
1,118,515 - HER17_RS04935 0.50 +0.5
1,118,608 + HER17_RS04935 0.64 +1.1
1,118,608 + HER17_RS04935 0.64 -1.3
1,118,629 + HER17_RS04935 0.67 -0.0
1,118,629 + HER17_RS04935 0.67 +0.5
1,118,667 + HER17_RS04935 0.72 -1.1
1,118,667 + HER17_RS04935 0.72 -0.1
1,118,667 + HER17_RS04935 0.72 -0.1
1,118,668 - HER17_RS04935 0.72 -0.7
1,118,668 - HER17_RS04935 0.72 -0.9
1,118,670 + HER17_RS04935 0.72 +1.0
1,118,673 + HER17_RS04935 0.73 -0.9
1,118,673 + HER17_RS04935 0.73 -0.9
1,118,674 - HER17_RS04935 0.73 +0.4
1,118,674 - HER17_RS04935 0.73 +0.0
1,118,677 + HER17_RS04935 0.73 -2.7
1,118,686 - HER17_RS04935 0.75 +1.0
1,118,694 + HER17_RS04935 0.76 -0.3
1,118,730 + HER17_RS04935 0.81 +0.2
1,118,730 + HER17_RS04935 0.81 -0.8
1,118,731 - HER17_RS04935 0.81 +0.3
1,118,731 - HER17_RS04935 0.81 -0.1
1,118,766 - HER17_RS04935 0.86 -0.6
1,118,771 + HER17_RS04935 0.87 +0.9
1,118,937 - -0.2
1,118,937 - -0.0
1,119,007 - -2.4
1,119,016 + -0.0
1,119,038 + +0.5
1,119,039 - -0.5

Or see this region's nucleotide sequence