Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04790

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,079,368	+		HER17_RS04780	0.66	-1.0
1,079,371	+		HER17_RS04780	0.67	+0.2
1,079,371	+		HER17_RS04780	0.67	-0.4
1,079,372	-		HER17_RS04780	0.67	+0.6
1,079,452	-				-0.4
1,079,452	-				-0.2
1,079,455	+				-0.6
1,079,456	-				+0.9
1,079,507	+				-0.2
1,079,508	-				-2.2
1,079,511	-				-0.1
1,079,538	+		HER17_RS04785	0.13	+0.4
1,079,538	+		HER17_RS04785	0.13	+0.3
1,079,540	+		HER17_RS04785	0.14	+1.3
1,079,540	+		HER17_RS04785	0.14	-0.4
1,079,540	+		HER17_RS04785	0.14	+0.6
1,079,540	+		HER17_RS04785	0.14	+0.6
1,079,541	-		HER17_RS04785	0.14	-0.2
1,079,575	-		HER17_RS04785	0.29	+1.3
1,079,575	-		HER17_RS04785	0.29	-0.7
1,079,579	-		HER17_RS04785	0.31	-0.7
1,079,604	+		HER17_RS04785	0.42	+0.5
1,079,604	+		HER17_RS04785	0.42	-0.3
1,079,604	+		HER17_RS04785	0.42	+0.9
1,079,627	+		HER17_RS04785	0.52	+0.3
1,079,627	+		HER17_RS04785	0.52	+0.8
1,079,627	+		HER17_RS04785	0.52	+0.1
1,079,628	-		HER17_RS04785	0.52	-0.3
1,079,753	-				+0.1
1,079,761	-				-0.4
1,079,765	-				-0.4
1,079,798	-				+0.1
1,079,814	+				-0.4
1,079,840	+				+0.0
1,079,840	+				-0.7
1,079,841	-				+0.0
1,079,851	+				+0.3
1,079,852	-				-0.4
1,079,852	-				-1.2
1,079,852	-				+0.6
1,079,865	+				-0.4
1,079,866	-				-0.7
1,079,952	-				+0.1
1,080,013	+				+1.0
1,080,014	-				-2.0
1,080,014	-				-0.4
1,080,014	-				+0.0
1,080,016	+				-1.2
1,080,033	-				-0.3
1,080,080	+				+0.8
1,080,081	-				-0.1
1,080,088	+				+0.4
1,080,124	+				-0.6
1,080,124	+				+0.7
1,080,124	+				-0.7
1,080,125	-				+0.4
1,080,126	+				-0.3
1,080,126	+				-0.0
1,080,162	+				+1.6
1,080,162	+				+0.2
1,080,166	+				-0.4
1,080,166	+				+0.1
1,080,167	-				+0.0
1,080,167	-				-0.3
1,080,168	+				-0.2
1,080,180	+				-0.8
1,080,180	+				+0.3
1,080,184	+				+0.3
1,080,185	-				+0.3
1,080,211	+				+1.0
1,080,212	-				+0.4
1,080,235	+				-0.7
1,080,235	+				+0.4
1,080,235	+				+0.1
1,080,236	-				-0.1
1,080,242	+				+0.2
1,080,286	-				+0.1
1,080,294	+				+0.0
1,080,294	+				-0.7
1,080,305	+				+0.8
1,080,311	+				-0.1
1,080,311	+				-0.7
1,080,311	+				-0.1
1,080,312	-				-0.5
1,080,312	-				+0.1
1,080,318	+				+1.4
1,080,346	+				+0.4
1,080,360	+				+0.3
1,080,360	+				+0.6
1,080,361	-				+0.3
1,080,361	-				+0.4
1,080,361	-				-0.3
1,080,366	-				-0.8
1,080,378	-				-1.7
1,080,378	-				+0.9
1,080,401	+				+0.0
1,080,401	+				-2.0
1,080,401	+				+1.6
1,080,401	+				+0.2
1,080,401	+				-0.5
1,080,401	+				-0.2
1,080,402	-				+1.1
1,080,402	-				+0.6
1,080,402	-				+0.2
1,080,405	+				-0.6
1,080,405	+				+0.4
1,080,405	+				+0.6
1,080,405	+				+0.2
1,080,405	+				+0.3
1,080,406	-				-0.8
1,080,406	-				+0.7
1,080,406	-				-0.6
1,080,406	-				+1.3
1,080,420	-				-0.3
1,080,445	+		HER17_RS04790	0.15	-0.9
1,080,446	-		HER17_RS04790	0.15	+0.2
1,080,446	-		HER17_RS04790	0.15	+0.0
1,080,446	-		HER17_RS04790	0.15	-1.1
1,080,456	-		HER17_RS04790	0.17	+0.5
1,080,456	-		HER17_RS04790	0.17	+0.1
1,080,459	+		HER17_RS04790	0.17	-1.4
1,080,556	+		HER17_RS04790	0.35	-0.4
1,080,557	-		HER17_RS04790	0.36	-0.0
1,080,574	+		HER17_RS04790	0.39	-0.1
1,080,574	+		HER17_RS04790	0.39	+0.9
1,080,574	+		HER17_RS04790	0.39	-0.7
1,080,574	+		HER17_RS04790	0.39	-1.0
1,080,574	+		HER17_RS04790	0.39	-1.0
1,080,575	-		HER17_RS04790	0.39	-0.2
1,080,575	-		HER17_RS04790	0.39	-0.6
1,080,575	-		HER17_RS04790	0.39	-1.0
1,080,576	+		HER17_RS04790	0.39	-1.0
1,080,619	+		HER17_RS04790	0.47	+0.3
1,080,624	+		HER17_RS04790	0.48	+0.8
1,080,625	-		HER17_RS04790	0.48	-0.7
1,080,625	-		HER17_RS04790	0.48	-1.3
1,080,705	-		HER17_RS04790	0.63	-0.4
1,080,727	+		HER17_RS04790	0.67	-0.2
1,080,777	+		HER17_RS04790	0.77	+0.2
1,080,777	+		HER17_RS04790	0.77	+0.3
1,080,777	+		HER17_RS04790	0.77	+0.3
1,080,778	-		HER17_RS04790	0.77	+0.2
1,080,829	+		HER17_RS04790	0.87	-0.2
1,080,829	+		HER17_RS04790	0.87	-0.1
1,080,830	-		HER17_RS04790	0.87	+0.5
1,080,868	-				+0.1
1,080,868	-				+0.1
1,080,868	-				+0.6
1,080,868	-				-1.0
1,080,871	+				-0.0
1,080,871	+				-0.5
1,080,872	-				-0.3
1,080,884	-				+0.8
1,080,884	-				-0.4
1,080,906	+				-0.8
1,080,906	+				-0.1
1,080,906	+				-0.7
1,080,906	+				-1.9
1,080,906	+				-0.9
1,080,906	+				-0.5
1,080,906	+				+0.6
1,080,907	-				-0.1
1,080,907	-				+0.7
1,080,907	-				+0.4
1,080,907	-				+0.2
1,080,911	-				+0.2
1,080,937	+				-1.2
1,080,938	-				+0.4
1,080,946	+				-0.4
1,080,947	-				+0.7
1,080,962	-				-0.2
1,080,962	-				+0.3
1,081,061	+				-2.3
1,081,074	+				-0.7
1,081,074	+				+1.1
1,081,075	-				-0.2
1,081,075	-				+1.8
1,081,076	+				-0.1
1,081,118	+				-0.1
1,081,246	-				-0.6
1,081,261	-				-0.5
1,081,283	+				+0.7
1,081,294	-				-1.0
1,081,294	-				+0.4
1,081,294	-				+1.2
1,081,375	+		HER17_RS04795	0.15	+0.3
1,081,375	+		HER17_RS04795	0.15	-1.0
1,081,375	+		HER17_RS04795	0.15	+0.7
1,081,376	-		HER17_RS04795	0.15	-0.7
1,081,376	-		HER17_RS04795	0.15	-0.4
1,081,376	-		HER17_RS04795	0.15	-0.1
1,081,376	-		HER17_RS04795	0.15	+0.8
1,081,376	-		HER17_RS04795	0.15	+0.4
1,081,376	-		HER17_RS04795	0.15	-0.3
1,081,452	-		HER17_RS04795	0.20	-0.3
1,081,464	-		HER17_RS04795	0.21	+0.8
1,081,464	-		HER17_RS04795	0.21	+1.3
1,081,476	+		HER17_RS04795	0.22	+0.6
1,081,509	+		HER17_RS04795	0.24	+0.5
1,081,596	+		HER17_RS04795	0.30	-0.6
1,081,599	+		HER17_RS04795	0.30	+0.1
1,081,600	-		HER17_RS04795	0.30	+1.6
1,081,600	-		HER17_RS04795	0.30	+0.1
1,081,681	-		HER17_RS04795	0.36	-1.0
1,081,681	-		HER17_RS04795	0.36	+0.3
1,081,691	-		HER17_RS04795	0.36	-0.6
1,081,691	-		HER17_RS04795	0.36	-1.4
1,081,691	-		HER17_RS04795	0.36	+1.0
1,081,698	+		HER17_RS04795	0.37	-0.2
1,081,698	+		HER17_RS04795	0.37	+0.4
1,081,699	-		HER17_RS04795	0.37	+0.4
1,081,830	+		HER17_RS04795	0.46	+0.7
1,081,830	+		HER17_RS04795	0.46	+0.8
1,081,831	-		HER17_RS04795	0.46	+0.6
1,081,874	+		HER17_RS04795	0.49	-0.5
1,081,874	+		HER17_RS04795	0.49	+0.1
1,081,874	+		HER17_RS04795	0.49	+0.3
1,081,875	-		HER17_RS04795	0.49	-0.4
1,081,896	+		HER17_RS04795	0.51	+0.0
1,081,896	+		HER17_RS04795	0.51	-1.3
1,081,896	+		HER17_RS04795	0.51	+0.6
1,081,897	-		HER17_RS04795	0.51	+0.1
1,081,900	+		HER17_RS04795	0.51	+0.6