Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04670

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,058,076	+				+0.7
1,058,082	-				-0.2
1,058,082	-				-0.5
1,058,093	+				-0.4
1,058,102	-				+0.1
1,058,102	-				-0.4
1,058,102	-				-0.1
1,058,162	+				-0.3
1,058,163	-				+0.4
1,058,163	-				+0.1
1,058,163	-				+0.1
1,058,168	-				-1.9
1,058,192	+				-0.2
1,058,192	+				-0.8
1,058,192	+				-0.3
1,058,192	+				+1.4
1,058,193	-				-0.6
1,058,193	-				+0.0
1,058,193	-				-0.6
1,058,279	+		HER17_RS04665	0.11	-0.2
1,058,379	+		HER17_RS04665	0.23	-0.4
1,058,379	+		HER17_RS04665	0.23	+2.2
1,058,380	-		HER17_RS04665	0.23	-0.2
1,058,381	+		HER17_RS04665	0.23	-0.1
1,058,382	-		HER17_RS04665	0.24	-1.3
1,058,382	-		HER17_RS04665	0.24	-0.1
1,058,484	-		HER17_RS04665	0.36	-0.6
1,058,520	-		HER17_RS04665	0.41	-0.1
1,058,567	+		HER17_RS04665	0.47	+0.7
1,058,568	-		HER17_RS04665	0.47	+0.3
1,058,568	-		HER17_RS04665	0.47	-0.6
1,058,568	-		HER17_RS04665	0.47	+0.3
1,058,568	-		HER17_RS04665	0.47	+0.9
1,058,580	+		HER17_RS04665	0.48	+0.9
1,058,580	+		HER17_RS04665	0.48	-0.1
1,058,594	+		HER17_RS04665	0.50	-0.4
1,058,595	-		HER17_RS04665	0.50	-0.1
1,058,603	+		HER17_RS04665	0.51	+1.2
1,058,603	+		HER17_RS04665	0.51	+0.0
1,058,604	-		HER17_RS04665	0.51	-0.6
1,058,604	-		HER17_RS04665	0.51	+1.2
1,058,778	+		HER17_RS04665	0.73	-0.8
1,059,020	+				-0.0
1,059,020	+				-0.1
1,059,020	+				+0.5
1,059,020	+				-0.1
1,059,021	-				-0.0
1,059,021	-				-0.4
1,059,021	-				-0.9
1,059,021	-				-0.5
1,059,021	-				-0.4
1,059,021	-				-0.9
1,059,022	+				+0.8
1,059,022	+				+0.5
1,059,023	-				-0.7
1,059,023	-				+0.1
1,059,023	-				+0.9
1,059,069	-				+0.1
1,059,105	+				+0.5
1,059,106	-				-0.5
1,059,192	-		HER17_RS04670	0.12	+0.2
1,059,205	-		HER17_RS04670	0.13	+0.1
1,059,303	+		HER17_RS04670	0.22	-0.4
1,059,303	+		HER17_RS04670	0.22	+0.5
1,059,303	+		HER17_RS04670	0.22	-1.1
1,059,303	+		HER17_RS04670	0.22	-1.6
1,059,303	+		HER17_RS04670	0.22	-0.3
1,059,303	+		HER17_RS04670	0.22	-0.5
1,059,303	+		HER17_RS04670	0.22	-0.1
1,059,303	+		HER17_RS04670	0.22	-2.0
1,059,304	-		HER17_RS04670	0.22	+0.3
1,059,304	-		HER17_RS04670	0.22	-0.0
1,059,304	-		HER17_RS04670	0.22	-0.4
1,059,304	-		HER17_RS04670	0.22	+0.0
1,059,304	-		HER17_RS04670	0.22	+0.5
1,059,304	-		HER17_RS04670	0.22	+0.9
1,059,304	-		HER17_RS04670	0.22	+0.2
1,059,304	-		HER17_RS04670	0.22	+0.9
1,059,304	-		HER17_RS04670	0.22	-0.1
1,059,305	+		HER17_RS04670	0.22	-0.9
1,059,305	+		HER17_RS04670	0.22	+0.1
1,059,305	+		HER17_RS04670	0.22	+0.0
1,059,305	+		HER17_RS04670	0.22	-1.4
1,059,305	+		HER17_RS04670	0.22	-1.4
1,059,306	-		HER17_RS04670	0.22	+0.2
1,059,306	-		HER17_RS04670	0.22	+1.0
1,059,306	-		HER17_RS04670	0.22	+0.0
1,059,306	-		HER17_RS04670	0.22	-0.2
1,059,306	-		HER17_RS04670	0.22	+0.2
1,059,347	+		HER17_RS04670	0.26	+0.6
1,059,347	+		HER17_RS04670	0.26	+0.6
1,059,347	+		HER17_RS04670	0.26	-0.2
1,059,347	+		HER17_RS04670	0.26	-0.0
1,059,347	+		HER17_RS04670	0.26	-0.1
1,059,348	-		HER17_RS04670	0.26	-0.0
1,059,348	-		HER17_RS04670	0.26	-0.6
1,059,385	-		HER17_RS04670	0.30	-0.6
1,059,532	+		HER17_RS04670	0.44	-0.1
1,059,533	-		HER17_RS04670	0.44	-0.9
1,059,533	-		HER17_RS04670	0.44	+0.0
1,059,536	+		HER17_RS04670	0.44	+0.0
1,059,536	+		HER17_RS04670	0.44	+1.1
1,059,537	-		HER17_RS04670	0.44	+0.6
1,059,537	-		HER17_RS04670	0.44	+0.3
1,059,537	-		HER17_RS04670	0.44	+0.1
1,059,552	+		HER17_RS04670	0.46	-0.1
1,059,552	+		HER17_RS04670	0.46	+1.3
1,059,552	+		HER17_RS04670	0.46	+0.3
1,059,553	-		HER17_RS04670	0.46	-0.1
1,059,553	-		HER17_RS04670	0.46	+0.4
1,059,553	-		HER17_RS04670	0.46	+0.5
1,059,553	-		HER17_RS04670	0.46	-0.2
1,059,553	-		HER17_RS04670	0.46	-0.4
1,059,553	-		HER17_RS04670	0.46	+1.1
1,059,553	-		HER17_RS04670	0.46	-0.8
1,059,553	-		HER17_RS04670	0.46	+0.2
1,059,553	-		HER17_RS04670	0.46	-0.4
1,059,553	-		HER17_RS04670	0.46	+0.9
1,059,560	+		HER17_RS04670	0.46	-0.7
1,059,561	-		HER17_RS04670	0.46	+0.9
1,059,561	-		HER17_RS04670	0.46	+0.1
1,059,561	-		HER17_RS04670	0.46	-0.7
1,059,662	+		HER17_RS04670	0.56	+0.3
1,059,684	+		HER17_RS04670	0.58	+1.0
1,059,684	+		HER17_RS04670	0.58	+1.9
1,059,684	+		HER17_RS04670	0.58	+0.4
1,059,684	+		HER17_RS04670	0.58	-0.2
1,059,685	-		HER17_RS04670	0.58	-0.4
1,059,685	-		HER17_RS04670	0.58	-0.1
1,059,705	-		HER17_RS04670	0.60	+0.2
1,059,802	+		HER17_RS04670	0.69	-0.2
1,059,802	+		HER17_RS04670	0.69	-1.2
1,059,803	-		HER17_RS04670	0.69	-1.0
1,059,803	-		HER17_RS04670	0.69	-0.6
1,059,803	-		HER17_RS04670	0.69	+0.6
1,059,856	+		HER17_RS04670	0.74	-0.1
1,059,857	-		HER17_RS04670	0.74	-0.1
1,059,867	+		HER17_RS04670	0.75	-0.1
1,059,867	+		HER17_RS04670	0.75	-0.4
1,059,867	+		HER17_RS04670	0.75	-1.3
1,059,868	-		HER17_RS04670	0.75	-1.2
1,059,915	-		HER17_RS04670	0.80	-0.4
1,060,040	+				+0.8
1,060,060	+				-0.4
1,060,145	+				+0.5
1,060,162	+				-1.8
1,060,162	+				-0.2
1,060,163	-				-0.2
1,060,163	-				-1.1
1,060,182	-				+0.4
1,060,411	+		HER17_RS04675	0.15	+0.2
1,060,412	-		HER17_RS04675	0.15	-0.4
1,060,755	+		HER17_RS04675	0.38	+0.5
1,060,755	+		HER17_RS04675	0.38	+0.4
1,060,756	-		HER17_RS04675	0.38	-0.6
1,060,807	+		HER17_RS04675	0.42	-0.4
1,061,031	-		HER17_RS04675	0.57	-1.2
1,061,054	-		HER17_RS04675	0.59	-0.5
1,061,125	+		HER17_RS04675	0.64	-0.4
1,061,125	+		HER17_RS04675	0.64	-1.5