Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03975 and HER17_RS03980 are separated by 474 nucleotides HER17_RS03980 and HER17_RS03985 overlap by 4 nucleotides
HER17_RS03975: HER17_RS03975 - peptide-methionine (S)-S-oxide reductase MsrA, at 894,405 to 895,043
_RS03975
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
Position (kb) 895
896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.623 kb on + strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.814 kb on + strand, within HER17_RS03975 at 894.824 kb on + strand, within HER17_RS03975 at 894.826 kb on + strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.905 kb on + strand, within HER17_RS03975 at 894.906 kb on - strand, within HER17_RS03975 at 894.997 kb on - strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.053 kb on - strand at 895.062 kb on + strand at 895.063 kb on - strand at 895.071 kb on + strand at 895.071 kb on + strand at 895.076 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.124 kb on + strand at 895.125 kb on - strand at 895.139 kb on + strand at 895.139 kb on + strand at 895.140 kb on - strand at 895.146 kb on - strand at 895.146 kb on - strand at 895.150 kb on + strand at 895.150 kb on + strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.157 kb on + strand at 895.203 kb on + strand at 895.204 kb on - strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.230 kb on - strand at 895.232 kb on + strand at 895.233 kb on - strand at 895.289 kb on + strand at 895.289 kb on + strand at 895.324 kb on + strand at 895.324 kb on + strand at 895.336 kb on + strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.339 kb on - strand at 895.339 kb on - strand at 895.346 kb on - strand at 895.346 kb on - strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.378 kb on - strand at 895.396 kb on + strand at 895.397 kb on - strand at 895.472 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.533 kb on - strand at 895.533 kb on - strand at 895.597 kb on + strand at 895.597 kb on + strand at 895.621 kb on + strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.625 kb on + strand at 895.625 kb on + strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.860 kb on + strand, within HER17_RS03980 at 895.861 kb on - strand, within HER17_RS03980 at 895.958 kb on - strand, within HER17_RS03980 at 895.968 kb on + strand, within HER17_RS03980 at 896.078 kb on - strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.110 kb on - strand, within HER17_RS03980 at 896.110 kb on - strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.173 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.205 kb on - strand, within HER17_RS03980 at 896.205 kb on - strand, within HER17_RS03980 at 896.357 kb on + strand, within HER17_RS03980 at 896.397 kb on - strand, within HER17_RS03980 at 896.436 kb on - strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.655 kb on + strand, within HER17_RS03980 at 896.738 kb on + strand, within HER17_RS03980 at 896.867 kb on + strand, within HER17_RS03980 at 896.868 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.938 kb on - strand, within HER17_RS03980 at 896.945 kb on + strand, within HER17_RS03980 at 897.012 kb on + strand, within HER17_RS03980 at 897.013 kb on - strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.093 kb on - strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.165 kb on - strand at 897.165 kb on - strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.229 kb on + strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.366 kb on + strand at 897.366 kb on + strand at 897.584 kb on - strand at 897.732 kb on + strand, within HER17_RS03985 at 897.733 kb on - strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.997 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.015 kb on + strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.018 kb on + strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.153 kb on - strand, within HER17_RS03985 at 898.221 kb on + strand, within HER17_RS03985 at 898.222 kb on - strand, within HER17_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 894,623 + HER17_RS03975 0.34 +1.0 894,623 + HER17_RS03975 0.34 -2.0 894,624 - HER17_RS03975 0.34 +0.7 894,624 - HER17_RS03975 0.34 +0.0 894,625 + HER17_RS03975 0.34 -0.9 894,625 + HER17_RS03975 0.34 +0.1 894,625 + HER17_RS03975 0.34 +0.8 894,625 + HER17_RS03975 0.34 -0.7 894,626 - HER17_RS03975 0.35 +0.7 894,626 - HER17_RS03975 0.35 -0.2 894,626 - HER17_RS03975 0.35 -0.3 894,626 - HER17_RS03975 0.35 -0.1 894,626 - HER17_RS03975 0.35 -0.3 894,629 + HER17_RS03975 0.35 +0.2 894,629 + HER17_RS03975 0.35 -0.6 894,630 - HER17_RS03975 0.35 +0.4 894,630 - HER17_RS03975 0.35 +0.5 894,721 + HER17_RS03975 0.49 -0.0 894,721 + HER17_RS03975 0.49 -1.4 894,721 + HER17_RS03975 0.49 +0.6 894,786 + HER17_RS03975 0.60 -0.5 894,786 + HER17_RS03975 0.60 +0.9 894,786 + HER17_RS03975 0.60 +0.0 894,786 + HER17_RS03975 0.60 +0.0 894,786 + HER17_RS03975 0.60 +2.2 894,787 - HER17_RS03975 0.60 +0.0 894,787 - HER17_RS03975 0.60 +0.0 894,787 - HER17_RS03975 0.60 -0.2 894,814 + HER17_RS03975 0.64 +1.2 894,824 + HER17_RS03975 0.66 -0.6 894,826 + HER17_RS03975 0.66 +0.6 894,827 - HER17_RS03975 0.66 -0.9 894,827 - HER17_RS03975 0.66 -0.4 894,905 + HER17_RS03975 0.78 -0.8 894,906 - HER17_RS03975 0.78 +0.5 894,997 - -0.3 895,052 + +0.4 895,052 + -0.5 895,052 + +0.4 895,053 - +0.5 895,062 + +0.7 895,063 - +1.0 895,071 + -0.5 895,071 + +0.9 895,076 - -0.1 895,098 - +0.3 895,098 - -0.5 895,098 - +0.3 895,098 - +0.7 895,122 + -0.2 895,122 + +1.0 895,122 + -0.7 895,122 + +0.1 895,122 + +0.2 895,122 + +0.3 895,123 - -0.9 895,123 - +1.0 895,123 - -0.8 895,124 + +0.4 895,125 - +0.2 895,139 + -0.2 895,139 + +0.3 895,140 - -1.6 895,146 - -0.6 895,146 - -0.2 895,150 + +0.7 895,150 + -0.4 895,151 - +0.4 895,151 - +0.2 895,151 - +0.1 895,151 - +0.0 895,157 + -0.3 895,203 + +0.3 895,204 - +0.2 895,223 + -0.2 895,223 + +0.5 895,223 + -1.5 895,230 - +0.2 895,232 + +0.2 895,233 - -0.4 895,289 + -1.1 895,289 + -0.6 895,324 + +0.0 895,324 + -0.1 895,336 + -0.4 895,337 - -0.4 895,337 - -0.2 895,337 - +0.7 895,337 - -0.3 895,337 - -0.2 895,337 - -0.1 895,337 - -0.1 895,338 + -0.1 895,338 + -0.7 895,338 + -2.3 895,339 - +0.2 895,339 - -0.7 895,346 - -0.1 895,346 - -1.0 895,377 + +0.7 895,377 + +0.9 895,377 + +0.7 895,378 - -0.0 895,396 + -1.2 895,397 - -2.0 895,472 + +0.1 895,532 + -2.2 895,532 + +0.9 895,532 + -1.1 895,533 - -0.7 895,533 - -0.7 895,597 + -0.6 895,597 + -0.7 895,621 + -2.8 895,622 - -1.5 895,622 - -2.8 895,622 - -0.9 895,622 - -1.3 895,625 + -3.1 895,625 + -1.0 895,626 - -0.6 895,626 - -2.1 895,626 - -0.6 895,716 + HER17_RS03980 0.12 -1.1 895,716 + HER17_RS03980 0.12 -0.8 895,716 + HER17_RS03980 0.12 -3.1 895,860 + HER17_RS03980 0.20 -1.3 895,861 - HER17_RS03980 0.20 -1.5 895,958 - HER17_RS03980 0.26 +0.7 895,968 + HER17_RS03980 0.26 -0.1 896,078 - HER17_RS03980 0.33 +1.0 896,109 + HER17_RS03980 0.34 -1.7 896,109 + HER17_RS03980 0.34 -1.1 896,109 + HER17_RS03980 0.34 -0.6 896,110 - HER17_RS03980 0.34 +0.1 896,110 - HER17_RS03980 0.34 -1.3 896,148 + HER17_RS03980 0.37 -0.1 896,148 + HER17_RS03980 0.37 -1.1 896,148 + HER17_RS03980 0.37 -2.0 896,149 - HER17_RS03980 0.37 -0.3 896,149 - HER17_RS03980 0.37 -0.3 896,149 - HER17_RS03980 0.37 -0.6 896,173 + HER17_RS03980 0.38 +0.4 896,204 + HER17_RS03980 0.40 -0.2 896,204 + HER17_RS03980 0.40 -0.0 896,204 + HER17_RS03980 0.40 -2.0 896,204 + HER17_RS03980 0.40 -1.0 896,205 - HER17_RS03980 0.40 +0.4 896,205 - HER17_RS03980 0.40 -0.5 896,357 + HER17_RS03980 0.49 -2.4 896,397 - HER17_RS03980 0.51 -1.3 896,436 - HER17_RS03980 0.53 -0.0 896,475 + HER17_RS03980 0.56 -1.1 896,475 + HER17_RS03980 0.56 +0.2 896,478 + HER17_RS03980 0.56 -1.0 896,478 + HER17_RS03980 0.56 -1.3 896,479 - HER17_RS03980 0.56 -0.8 896,479 - HER17_RS03980 0.56 -1.5 896,655 + HER17_RS03980 0.66 +0.5 896,738 + HER17_RS03980 0.71 -1.6 896,867 + HER17_RS03980 0.79 -0.9 896,868 - HER17_RS03980 0.79 -1.3 896,932 - HER17_RS03980 0.82 -1.8 896,932 - HER17_RS03980 0.82 -1.6 896,933 + HER17_RS03980 0.82 -1.8 896,933 + HER17_RS03980 0.82 -3.0 896,933 + HER17_RS03980 0.82 -1.8 896,933 + HER17_RS03980 0.82 -1.1 896,933 + HER17_RS03980 0.82 -0.9 896,933 + HER17_RS03980 0.82 -1.2 896,933 + HER17_RS03980 0.82 -1.3 896,933 + HER17_RS03980 0.82 -0.8 896,933 + HER17_RS03980 0.82 -0.0 896,933 + HER17_RS03980 0.82 -1.5 896,933 + HER17_RS03980 0.82 -0.3 896,933 + HER17_RS03980 0.82 -0.6 896,934 - HER17_RS03980 0.83 +0.1 896,934 - HER17_RS03980 0.83 -2.2 896,934 - HER17_RS03980 0.83 -1.6 896,934 - HER17_RS03980 0.83 -2.7 896,934 - HER17_RS03980 0.83 -0.6 896,934 - HER17_RS03980 0.83 -1.4 896,937 + HER17_RS03980 0.83 -1.9 896,937 + HER17_RS03980 0.83 -2.3 896,937 + HER17_RS03980 0.83 -1.3 896,938 - HER17_RS03980 0.83 +0.7 896,945 + HER17_RS03980 0.83 -0.8 897,012 + HER17_RS03980 0.87 -3.1 897,013 - HER17_RS03980 0.87 -1.2 897,018 + HER17_RS03980 0.87 -2.2 897,018 + HER17_RS03980 0.87 +0.7 897,018 + HER17_RS03980 0.87 -1.1 897,018 + HER17_RS03980 0.87 +0.2 897,019 - HER17_RS03980 0.87 -0.3 897,019 - HER17_RS03980 0.87 -0.4 897,019 - HER17_RS03980 0.87 -0.4 897,093 - -0.0 897,164 + -1.0 897,164 + -0.3 897,164 + -0.1 897,165 - -2.2 897,165 - -2.0 897,207 + -0.1 897,207 + -1.7 897,207 + -0.7 897,229 + +0.6 897,230 - -0.2 897,230 - -1.0 897,230 - -0.9 897,366 + -0.3 897,366 + -1.7 897,584 - -1.3 897,732 + HER17_RS03985 0.12 -0.4 897,733 - HER17_RS03985 0.12 -2.1 897,951 + HER17_RS03985 0.18 -0.5 897,951 + HER17_RS03985 0.18 -1.8 897,952 - HER17_RS03985 0.18 -1.5 897,952 - HER17_RS03985 0.18 -0.4 897,997 + HER17_RS03985 0.19 -1.4 898,005 + HER17_RS03985 0.19 -2.8 898,005 + HER17_RS03985 0.19 -1.4 898,015 + HER17_RS03985 0.19 -0.4 898,016 - HER17_RS03985 0.19 -1.6 898,016 - HER17_RS03985 0.19 -2.4 898,018 + HER17_RS03985 0.20 -1.6 898,019 - HER17_RS03985 0.20 -1.0 898,019 - HER17_RS03985 0.20 -0.1 898,153 - HER17_RS03985 0.23 -1.7 898,221 + HER17_RS03985 0.25 -0.3 898,222 - HER17_RS03985 0.25 -0.9
Or see this region's nucleotide sequence