Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01760

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01750 and HER17_RS01755 are separated by 2 nucleotidesHER17_RS01755 and HER17_RS01760 overlap by 8 nucleotidesHER17_RS01760 and HER17_RS01765 overlap by 4 nucleotidesHER17_RS01765 and HER17_RS01770 are separated by 99 nucleotides HER17_RS01750: HER17_RS01750 - pilus assembly protein PilM, at 413,042 to 413,893 _RS01750 HER17_RS01755: HER17_RS01755 - PilN domain-containing protein, at 413,896 to 414,465 _RS01755 HER17_RS01760: HER17_RS01760 - hypothetical protein, at 414,458 to 415,045 _RS01760 HER17_RS01765: HER17_RS01765 - DNA utilization family protein, at 415,042 to 415,419 _RS01765 HER17_RS01770: HER17_RS01770 - DNA uptake porin HofQ, at 415,519 to 416,793 _RS01770 Position (kb) 414 415 416Strain fitness (log2 ratio) -2 -1 0 1 2at 413.649 kb on + strand, within HER17_RS01750at 413.649 kb on + strand, within HER17_RS01750at 413.650 kb on - strand, within HER17_RS01750at 413.694 kb on + strand, within HER17_RS01750at 413.695 kb on - strand, within HER17_RS01750at 413.699 kb on - strand, within HER17_RS01750at 413.728 kb on - strand, within HER17_RS01750at 413.732 kb on + strand, within HER17_RS01750at 413.732 kb on + strand, within HER17_RS01750at 413.733 kb on - strand, within HER17_RS01750at 413.778 kb on + strand, within HER17_RS01750at 413.779 kb on - strand, within HER17_RS01750at 413.779 kb on - strand, within HER17_RS01750at 413.779 kb on - strand, within HER17_RS01750at 413.782 kb on - strand, within HER17_RS01750at 413.895 kb on + strandat 413.895 kb on + strandat 413.895 kb on + strandat 413.895 kb on + strandat 413.895 kb on + strandat 413.895 kb on + strandat 413.896 kb on - strandat 413.896 kb on - strandat 413.896 kb on - strandat 413.896 kb on - strandat 413.908 kb on - strandat 413.976 kb on - strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on + strand, within HER17_RS01755at 413.993 kb on - strand, within HER17_RS01755at 414.013 kb on + strand, within HER17_RS01755at 414.062 kb on + strand, within HER17_RS01755at 414.062 kb on + strand, within HER17_RS01755at 414.063 kb on - strand, within HER17_RS01755at 414.097 kb on + strand, within HER17_RS01755at 414.098 kb on - strand, within HER17_RS01755at 414.098 kb on - strand, within HER17_RS01755at 414.326 kb on + strand, within HER17_RS01755at 414.329 kb on + strand, within HER17_RS01755at 414.330 kb on - strand, within HER17_RS01755at 414.354 kb on - strand, within HER17_RS01755at 414.354 kb on - strand, within HER17_RS01755at 414.463 kb on + strandat 414.514 kb on + strandat 414.573 kb on + strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.622 kb on - strand, within HER17_RS01760at 414.680 kb on - strand, within HER17_RS01760at 414.714 kb on + strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.769 kb on + strand, within HER17_RS01760at 414.770 kb on - strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.881 kb on + strand, within HER17_RS01760at 414.882 kb on - strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.954 kb on + strand, within HER17_RS01760at 414.993 kb on + strandat 414.994 kb on - strandat 415.014 kb on + strandat 415.015 kb on - strandat 415.051 kb on - strandat 415.051 kb on - strandat 415.146 kb on + strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.374 kb on + strand, within HER17_RS01765at 415.418 kb on - strandat 415.498 kb on + strandat 415.525 kb on - strandat 415.525 kb on - strandat 415.535 kb on + strandat 415.535 kb on + strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.562 kb on + strandat 415.563 kb on - strandat 415.646 kb on + strandat 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.881 kb on - strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.913 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.016 kb on - strand, within HER17_RS01770

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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413,649 + HER17_RS01750 0.71 -0.2
413,649 + HER17_RS01750 0.71 -0.8
413,650 - HER17_RS01750 0.71 +0.4
413,694 + HER17_RS01750 0.77 +0.2
413,695 - HER17_RS01750 0.77 -0.6
413,699 - HER17_RS01750 0.77 -0.1
413,728 - HER17_RS01750 0.81 -0.6
413,732 + HER17_RS01750 0.81 +2.3
413,732 + HER17_RS01750 0.81 -1.1
413,733 - HER17_RS01750 0.81 +0.4
413,778 + HER17_RS01750 0.86 +0.9
413,779 - HER17_RS01750 0.87 +0.4
413,779 - HER17_RS01750 0.87 +0.3
413,779 - HER17_RS01750 0.87 +0.4
413,782 - HER17_RS01750 0.87 -0.0
413,895 + +0.4
413,895 + -0.6
413,895 + +0.1
413,895 + -0.6
413,895 + -1.0
413,895 + +0.0
413,896 - +1.5
413,896 - +0.0
413,896 - -0.1
413,896 - -0.3
413,908 - +0.8
413,976 - HER17_RS01755 0.14 +0.1
413,993 + HER17_RS01755 0.17 -0.4
413,993 + HER17_RS01755 0.17 -0.6
413,993 + HER17_RS01755 0.17 -0.4
413,993 + HER17_RS01755 0.17 +0.6
413,993 + HER17_RS01755 0.17 -0.6
413,993 + HER17_RS01755 0.17 +0.4
413,993 + HER17_RS01755 0.17 +2.0
413,993 - HER17_RS01755 0.17 -0.8
414,013 + HER17_RS01755 0.21 +0.3
414,062 + HER17_RS01755 0.29 -2.1
414,062 + HER17_RS01755 0.29 -0.6
414,063 - HER17_RS01755 0.29 -1.1
414,097 + HER17_RS01755 0.35 -0.8
414,098 - HER17_RS01755 0.35 -0.3
414,098 - HER17_RS01755 0.35 +1.8
414,326 + HER17_RS01755 0.75 +0.9
414,329 + HER17_RS01755 0.76 -0.4
414,330 - HER17_RS01755 0.76 -0.6
414,354 - HER17_RS01755 0.80 -0.4
414,354 - HER17_RS01755 0.80 -0.6
414,463 + +0.3
414,514 + +1.0
414,573 + HER17_RS01760 0.20 -0.4
414,574 - HER17_RS01760 0.20 +1.1
414,574 - HER17_RS01760 0.20 +0.2
414,622 - HER17_RS01760 0.28 -0.6
414,680 - HER17_RS01760 0.38 -0.9
414,714 + HER17_RS01760 0.44 -0.2
414,715 - HER17_RS01760 0.44 +0.2
414,715 - HER17_RS01760 0.44 +0.0
414,769 + HER17_RS01760 0.53 -0.1
414,770 - HER17_RS01760 0.53 -0.5
414,807 + HER17_RS01760 0.59 -0.0
414,807 + HER17_RS01760 0.59 -0.1
414,807 + HER17_RS01760 0.59 +1.0
414,881 + HER17_RS01760 0.72 -0.7
414,882 - HER17_RS01760 0.72 -0.7
414,926 + HER17_RS01760 0.80 -0.4
414,926 + HER17_RS01760 0.80 +2.4
414,926 + HER17_RS01760 0.80 +0.1
414,926 + HER17_RS01760 0.80 -0.7
414,926 + HER17_RS01760 0.80 -0.4
414,926 + HER17_RS01760 0.80 -0.7
414,926 + HER17_RS01760 0.80 +0.4
414,926 + HER17_RS01760 0.80 -0.0
414,926 + HER17_RS01760 0.80 -0.1
414,927 - HER17_RS01760 0.80 +0.5
414,927 - HER17_RS01760 0.80 -0.3
414,927 - HER17_RS01760 0.80 -0.7
414,927 - HER17_RS01760 0.80 -0.0
414,927 - HER17_RS01760 0.80 +0.1
414,927 - HER17_RS01760 0.80 -0.4
414,927 - HER17_RS01760 0.80 +0.6
414,927 - HER17_RS01760 0.80 +0.3
414,927 - HER17_RS01760 0.80 -0.2
414,927 - HER17_RS01760 0.80 -0.5
414,927 - HER17_RS01760 0.80 +2.0
414,954 + HER17_RS01760 0.84 +2.0
414,993 + +0.8
414,994 - +0.6
415,014 + -0.2
415,015 - -0.2
415,051 - +0.2
415,051 - +0.5
415,146 + HER17_RS01765 0.28 +0.7
415,191 - HER17_RS01765 0.39 -0.3
415,191 - HER17_RS01765 0.39 +0.7
415,191 - HER17_RS01765 0.39 +1.3
415,191 - HER17_RS01765 0.39 -0.9
415,314 + HER17_RS01765 0.72 -0.4
415,314 + HER17_RS01765 0.72 +1.0
415,374 + HER17_RS01765 0.88 -1.3
415,418 - -0.2
415,498 + +0.1
415,525 - -0.3
415,525 - +0.1
415,535 + +0.2
415,535 + +1.1
415,536 - -0.6
415,536 - +0.6
415,536 - +0.2
415,562 + +0.3
415,563 - +2.4
415,646 + +0.4
415,729 - HER17_RS01770 0.16 -0.0
415,729 - HER17_RS01770 0.16 -0.2
415,729 - HER17_RS01770 0.16 -0.8
415,729 - HER17_RS01770 0.16 +0.5
415,760 + HER17_RS01770 0.19 +0.3
415,760 + HER17_RS01770 0.19 -0.2
415,776 + HER17_RS01770 0.20 -0.2
415,776 + HER17_RS01770 0.20 +0.6
415,881 - HER17_RS01770 0.28 +0.5
415,890 + HER17_RS01770 0.29 -0.4
415,890 + HER17_RS01770 0.29 +0.2
415,891 - HER17_RS01770 0.29 +0.6
415,891 - HER17_RS01770 0.29 +0.3
415,891 - HER17_RS01770 0.29 -0.0
415,891 - HER17_RS01770 0.29 +0.6
415,891 - HER17_RS01770 0.29 +0.3
415,891 - HER17_RS01770 0.29 +0.4
415,893 + HER17_RS01770 0.29 -0.0
415,893 + HER17_RS01770 0.29 +0.4
415,893 + HER17_RS01770 0.29 -0.9
415,894 - HER17_RS01770 0.29 -0.2
415,894 - HER17_RS01770 0.29 -1.1
415,894 - HER17_RS01770 0.29 +1.2
415,894 - HER17_RS01770 0.29 -0.3
415,894 - HER17_RS01770 0.29 -0.1
415,894 - HER17_RS01770 0.29 +0.7
415,894 - HER17_RS01770 0.29 -0.2
415,894 - HER17_RS01770 0.29 -0.4
415,894 - HER17_RS01770 0.29 +0.5
415,894 - HER17_RS01770 0.29 -0.2
415,912 + HER17_RS01770 0.31 -1.1
415,912 + HER17_RS01770 0.31 +0.5
415,912 + HER17_RS01770 0.31 -0.4
415,913 - HER17_RS01770 0.31 +0.4
415,965 - HER17_RS01770 0.35 +1.0
415,965 - HER17_RS01770 0.35 -0.3
416,008 - HER17_RS01770 0.38 +0.1
416,008 - HER17_RS01770 0.38 +0.5
416,016 - HER17_RS01770 0.39 -0.8

Or see this region's nucleotide sequence