Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00835 and HER17_RS00840 are separated by 119 nucleotides HER17_RS00840 and HER17_RS00845 are separated by 134 nucleotides HER17_RS00845 and HER17_RS00850 are separated by 145 nucleotides
HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781
_RS00835
HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386
_RS00840
HER17_RS00845: HER17_RS00845 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 196,521 to 197,438
_RS00845
HER17_RS00850: HER17_RS00850 - HslU--HslV peptidase ATPase subunit, at 197,584 to 198,915
_RS00850
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.596 kb on - strand, within HER17_RS00835 at 195.779 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.877 kb on - strand at 195.899 kb on + strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.902 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.934 kb on - strand at 195.943 kb on - strand at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 196.300 kb on - strand, within HER17_RS00840 at 196.314 kb on + strand, within HER17_RS00840 at 196.315 kb on - strand, within HER17_RS00840 at 196.356 kb on + strand at 196.357 kb on - strand at 196.374 kb on + strand at 196.380 kb on - strand at 196.380 kb on - strand at 196.386 kb on + strand at 196.392 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.423 kb on + strand at 196.423 kb on + strand at 196.424 kb on - strand at 196.424 kb on - strand at 196.480 kb on + strand at 196.481 kb on - strand at 196.481 kb on - strand at 196.522 kb on + strand at 196.530 kb on + strand at 196.531 kb on - strand at 196.630 kb on + strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.696 kb on + strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.753 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.885 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.940 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.993 kb on + strand, within HER17_RS00845 at 196.994 kb on - strand, within HER17_RS00845 at 197.000 kb on + strand, within HER17_RS00845 at 197.001 kb on - strand, within HER17_RS00845 at 197.012 kb on + strand, within HER17_RS00845 at 197.013 kb on - strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.067 kb on - strand, within HER17_RS00845 at 197.322 kb on - strand, within HER17_RS00845 at 197.430 kb on + strand at 197.488 kb on - strand at 197.489 kb on + strand at 197.585 kb on + strand at 197.587 kb on + strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.588 kb on - strand at 197.592 kb on + strand at 197.593 kb on - strand at 197.618 kb on - strand at 197.618 kb on - strand at 197.620 kb on + strand at 197.620 kb on + strand at 197.620 kb on + strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.621 kb on - strand at 197.637 kb on + strand at 197.637 kb on + strand at 197.637 kb on + strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.638 kb on - strand at 197.642 kb on - strand at 197.642 kb on - strand at 197.645 kb on + strand at 197.645 kb on + strand at 197.646 kb on - strand at 197.646 kb on - strand at 197.646 kb on - strand at 197.693 kb on + strand at 197.694 kb on - strand at 197.728 kb on - strand, within HER17_RS00850 at 197.749 kb on - strand, within HER17_RS00850 at 197.853 kb on - strand, within HER17_RS00850 at 197.927 kb on - strand, within HER17_RS00850 at 198.030 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.312 kb on + strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850 at 198.313 kb on - strand, within HER17_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 195,596 - HER17_RS00835 0.23 -0.7 195,779 + -0.6 195,830 + +1.1 195,831 - -0.2 195,831 - -0.2 195,877 - +0.9 195,899 + -0.9 195,900 - +0.4 195,900 - -0.2 195,900 - -0.2 195,902 + +0.2 195,933 + +1.7 195,933 + +0.1 195,933 + -0.4 195,933 + -0.1 195,934 - +0.3 195,943 - -0.1 195,953 + HER17_RS00840 0.11 +0.6 195,953 + HER17_RS00840 0.11 -1.6 195,953 + HER17_RS00840 0.11 +1.1 196,300 - HER17_RS00840 0.82 -0.6 196,314 + HER17_RS00840 0.85 +0.0 196,315 - HER17_RS00840 0.85 +0.4 196,356 + +1.2 196,357 - -0.4 196,374 + +0.0 196,380 - -0.3 196,380 - +0.2 196,386 + -0.1 196,392 + +0.3 196,421 + +1.5 196,421 + +0.5 196,421 + -0.9 196,421 + -0.0 196,421 + -0.9 196,422 - +0.1 196,422 - +1.0 196,422 - -0.1 196,422 - -0.0 196,422 - +0.5 196,422 - +0.1 196,422 - +0.3 196,423 + -1.3 196,423 + -0.8 196,424 - +1.1 196,424 - +0.5 196,480 + -0.8 196,481 - +0.5 196,481 - +0.6 196,522 + +0.6 196,530 + -0.2 196,531 - -0.1 196,630 + HER17_RS00845 0.12 +0.4 196,631 - HER17_RS00845 0.12 -0.9 196,631 - HER17_RS00845 0.12 +0.3 196,631 - HER17_RS00845 0.12 -0.4 196,696 + HER17_RS00845 0.19 -0.7 196,697 - HER17_RS00845 0.19 +1.5 196,697 - HER17_RS00845 0.19 -0.7 196,697 - HER17_RS00845 0.19 -0.3 196,697 - HER17_RS00845 0.19 -0.6 196,753 + HER17_RS00845 0.25 -0.9 196,808 + HER17_RS00845 0.31 +0.8 196,808 + HER17_RS00845 0.31 +2.1 196,808 + HER17_RS00845 0.31 -0.2 196,863 + HER17_RS00845 0.37 -0.4 196,863 + HER17_RS00845 0.37 +0.6 196,885 - HER17_RS00845 0.40 +0.1 196,922 - HER17_RS00845 0.44 -0.7 196,922 - HER17_RS00845 0.44 +0.1 196,924 + HER17_RS00845 0.44 +0.2 196,924 + HER17_RS00845 0.44 +0.3 196,925 - HER17_RS00845 0.44 -0.6 196,925 - HER17_RS00845 0.44 +0.1 196,925 - HER17_RS00845 0.44 +1.5 196,940 + HER17_RS00845 0.46 +0.1 196,987 + HER17_RS00845 0.51 +0.6 196,987 + HER17_RS00845 0.51 -0.0 196,993 + HER17_RS00845 0.51 +0.1 196,994 - HER17_RS00845 0.52 -0.1 197,000 + HER17_RS00845 0.52 +0.1 197,001 - HER17_RS00845 0.52 -0.2 197,012 + HER17_RS00845 0.53 -0.3 197,013 - HER17_RS00845 0.54 +0.4 197,014 + HER17_RS00845 0.54 -3.1 197,014 + HER17_RS00845 0.54 +0.2 197,014 + HER17_RS00845 0.54 +0.4 197,014 + HER17_RS00845 0.54 -0.7 197,015 - HER17_RS00845 0.54 -0.6 197,015 - HER17_RS00845 0.54 +1.1 197,015 - HER17_RS00845 0.54 -0.7 197,015 - HER17_RS00845 0.54 -0.7 197,015 - HER17_RS00845 0.54 -0.5 197,015 - HER17_RS00845 0.54 -1.0 197,066 + HER17_RS00845 0.59 -0.8 197,066 + HER17_RS00845 0.59 +0.3 197,067 - HER17_RS00845 0.59 -1.2 197,322 - HER17_RS00845 0.87 -1.6 197,430 + +0.3 197,488 - -0.9 197,489 + +0.8 197,585 + -0.9 197,587 + +0.1 197,588 - -0.2 197,588 - +0.1 197,588 - -0.8 197,588 - -0.9 197,592 + -0.5 197,593 - +0.8 197,618 - -0.5 197,618 - -0.3 197,620 + +0.9 197,620 + +0.4 197,620 + -0.2 197,621 - +1.4 197,621 - +0.1 197,621 - -0.7 197,621 - -0.1 197,637 + -1.4 197,637 + -0.1 197,637 + +1.7 197,638 - -0.8 197,638 - +0.4 197,638 - -0.1 197,638 - +0.7 197,638 - -0.3 197,642 - +0.7 197,642 - -1.3 197,645 + -0.5 197,645 + -0.1 197,646 - +0.9 197,646 - -0.3 197,646 - +0.4 197,693 + -0.9 197,694 - -0.1 197,728 - HER17_RS00850 0.11 +0.4 197,749 - HER17_RS00850 0.12 +0.9 197,853 - HER17_RS00850 0.20 -1.2 197,927 - HER17_RS00850 0.26 +0.8 198,030 + HER17_RS00850 0.33 -2.6 198,312 + HER17_RS00850 0.55 +1.6 198,312 + HER17_RS00850 0.55 -0.7 198,312 + HER17_RS00850 0.55 -0.1 198,312 + HER17_RS00850 0.55 -0.5 198,312 + HER17_RS00850 0.55 -1.6 198,312 + HER17_RS00850 0.55 -0.3 198,313 - HER17_RS00850 0.55 +0.7 198,313 - HER17_RS00850 0.55 -1.4 198,313 - HER17_RS00850 0.55 +0.5 198,313 - HER17_RS00850 0.55 +0.1
Or see this region's nucleotide sequence