Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19535

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,388,496	-		HER17_RS19525	0.80	-1.4
4,388,496	-		HER17_RS19525	0.80	+0.2
4,388,496	-		HER17_RS19525	0.80	+0.4
4,388,498	+		HER17_RS19525	0.80	-0.6
4,388,499	-		HER17_RS19525	0.80	-0.5
4,388,660	+		HER17_RS19525	0.88	+0.4
4,388,660	+		HER17_RS19525	0.88	+0.4
4,388,666	+		HER17_RS19525	0.88	+0.4
4,388,667	-		HER17_RS19525	0.88	+0.8
4,388,667	-		HER17_RS19525	0.88	+0.8
4,388,681	+		HER17_RS19525	0.89	+0.1
4,388,681	+		HER17_RS19525	0.89	-0.3
4,388,682	-		HER17_RS19525	0.89	-1.2
4,388,715	-				-0.3
4,388,715	-				+0.2
4,388,898	+				-0.0
4,388,899	-				+0.3
4,388,899	-				+0.3
4,388,983	+				+0.6
4,388,983	+				-0.0
4,389,000	+				+0.8
4,389,000	+				-1.5
4,389,001	-				-0.3
4,389,007	+				-1.2
4,389,007	+				+0.4
4,389,008	-				+0.3
4,389,017	-				-0.3
4,389,017	-				-0.3
4,389,017	-				+2.3
4,389,100	+		HER17_RS19530	0.21	-1.9
4,389,100	+		HER17_RS19530	0.21	+0.4
4,389,101	-		HER17_RS19530	0.22	+0.8
4,389,101	-		HER17_RS19530	0.22	+0.2
4,389,141	+		HER17_RS19530	0.30	-0.3
4,389,141	+		HER17_RS19530	0.30	-2.1
4,389,301	-		HER17_RS19530	0.65	+0.4
4,389,301	-		HER17_RS19530	0.65	-2.9
4,389,301	-		HER17_RS19530	0.65	-0.1
4,389,319	+		HER17_RS19530	0.68	+0.5
4,389,319	+		HER17_RS19530	0.68	+2.3
4,389,377	+		HER17_RS19530	0.81	-1.8
4,389,510	+				-0.0
4,389,511	-				+0.7
4,389,511	-				+0.4
4,389,511	-				-0.7
4,389,511	-				+1.2
4,389,766	+		HER17_RS19535	0.44	+0.0
4,389,869	-		HER17_RS19535	0.60	+0.5
4,389,869	-		HER17_RS19535	0.60	+0.2
4,389,893	+		HER17_RS19535	0.64	+0.4
4,389,894	-		HER17_RS19535	0.64	-0.3
4,390,026	-		HER17_RS19535	0.84	-0.2
4,390,039	+		HER17_RS19535	0.86	+0.2
4,390,039	+		HER17_RS19535	0.86	-0.4
4,390,039	+		HER17_RS19535	0.86	-0.4
4,390,039	+		HER17_RS19535	0.86	+0.1
4,390,040	-		HER17_RS19535	0.86	+0.0
4,390,040	-		HER17_RS19535	0.86	-0.3
4,390,040	-		HER17_RS19535	0.86	-0.1
4,390,040	-		HER17_RS19535	0.86	-0.4
4,390,077	+				-0.4
4,390,078	-				-1.0
4,390,095	+				+0.1
4,390,110	+				-0.3
4,390,110	+				+0.7
4,390,113	+				+0.2
4,390,113	+				+0.4
4,390,113	+				+0.2
4,390,113	+				+0.0
4,390,113	+				+0.8
4,390,114	-				+0.1
4,390,114	-				+0.6
4,390,114	-				-0.4
4,390,120	-				-0.2
4,390,149	+				-1.0
4,390,149	+				-0.0
4,390,174	+				+0.3
4,390,180	+				-0.4
4,390,180	+				+0.2
4,390,180	+				-0.7
4,390,181	-				-0.3
4,390,181	-				-1.5
4,390,188	+				-0.3
4,390,188	+				-0.4
4,390,188	+				-0.1
4,390,189	-				-1.4
4,390,189	-				-2.4
4,390,189	-				+0.1
4,390,189	-				+0.6
4,390,192	+				-1.1
4,390,193	-				+0.5
4,390,193	-				+0.7
4,390,193	-				+0.5
4,390,193	-				-0.1
4,390,193	-				-0.7
4,390,193	-				-1.1
4,390,263	+				-0.7
4,390,263	+				-1.5
4,390,278	+		HER17_RS19540	0.13	-0.3
4,390,279	-		HER17_RS19540	0.13	-0.4
4,390,279	-		HER17_RS19540	0.13	-1.2
4,390,279	-		HER17_RS19540	0.13	-0.2
4,390,279	-		HER17_RS19540	0.13	+0.0
4,390,528	+		HER17_RS19540	0.66	+1.7
4,390,528	+		HER17_RS19540	0.66	+0.1
4,390,529	-		HER17_RS19540	0.66	+0.1
4,390,532	+		HER17_RS19540	0.67	-0.3
4,390,532	+		HER17_RS19540	0.67	+0.4
4,390,533	-		HER17_RS19540	0.67	+0.1
4,390,533	-		HER17_RS19540	0.67	+0.2
4,390,533	-		HER17_RS19540	0.67	-1.2
4,390,541	-		HER17_RS19540	0.69	-0.6
4,390,556	+		HER17_RS19540	0.72	+0.1
4,390,556	+		HER17_RS19540	0.72	+0.1
4,390,556	+		HER17_RS19540	0.72	+0.4
4,390,557	-		HER17_RS19540	0.72	+0.3
4,390,557	-		HER17_RS19540	0.72	+1.0
4,390,557	-		HER17_RS19540	0.72	-0.7
4,390,560	+		HER17_RS19540	0.73	-1.1
4,390,560	+		HER17_RS19540	0.73	-0.5
4,390,560	+		HER17_RS19540	0.73	+1.6
4,390,560	+		HER17_RS19540	0.73	+1.1
4,390,560	+		HER17_RS19540	0.73	+0.4
4,390,561	-		HER17_RS19540	0.73	-2.5
4,390,561	-		HER17_RS19540	0.73	+0.2
4,390,561	-		HER17_RS19540	0.73	-0.1
4,390,562	+		HER17_RS19540	0.73	+0.5
4,390,562	+		HER17_RS19540	0.73	-0.2
4,390,562	+		HER17_RS19540	0.73	-0.7
4,390,563	-		HER17_RS19540	0.74	-0.9
4,390,563	-		HER17_RS19540	0.74	-0.5
4,390,563	-		HER17_RS19540	0.74	+0.8
4,390,563	-		HER17_RS19540	0.74	+0.1
4,390,563	-		HER17_RS19540	0.74	+0.9
4,390,563	-		HER17_RS19540	0.74	-0.1
4,390,563	-		HER17_RS19540	0.74	-0.3
4,390,582	+		HER17_RS19540	0.78	+0.2
4,390,616	-		HER17_RS19540	0.85	+0.8
4,390,688	-				-0.6
4,390,688	-				+0.4
4,390,688	-				+0.3
4,390,688	-				-0.2
4,390,719	+				-0.1
4,390,720	-				+0.1
4,390,764	+		HER17_RS19545	0.15	-0.4
4,390,764	+		HER17_RS19545	0.15	-0.3
4,390,764	+		HER17_RS19545	0.15	+0.2
4,390,764	+		HER17_RS19545	0.15	-0.2
4,390,765	-		HER17_RS19545	0.15	+0.5
4,390,765	-		HER17_RS19545	0.15	-0.8
4,390,765	-		HER17_RS19545	0.15	-1.2
4,390,765	-		HER17_RS19545	0.15	-0.4
4,390,765	-		HER17_RS19545	0.15	-0.3
4,390,798	+		HER17_RS19545	0.23	-0.7
4,390,873	+		HER17_RS19545	0.40	-0.1
4,390,874	-		HER17_RS19545	0.40	+0.3
4,390,899	+		HER17_RS19545	0.45	+0.7
4,390,899	+		HER17_RS19545	0.45	-0.2
4,390,899	+		HER17_RS19545	0.45	-0.3
4,390,900	-		HER17_RS19545	0.46	+0.1
4,390,900	-		HER17_RS19545	0.46	+0.2
4,390,901	+		HER17_RS19545	0.46	-0.8
4,390,901	+		HER17_RS19545	0.46	+0.2
4,390,901	+		HER17_RS19545	0.46	-0.1
4,390,901	+		HER17_RS19545	0.46	+0.1
4,390,902	-		HER17_RS19545	0.46	+0.8
4,390,902	-		HER17_RS19545	0.46	-0.2
4,390,902	-		HER17_RS19545	0.46	-0.7
4,390,910	+		HER17_RS19545	0.48	-0.6
4,390,965	+		HER17_RS19545	0.60	+0.0
4,390,993	-		HER17_RS19545	0.66	+0.7
4,390,993	-		HER17_RS19545	0.66	-1.5