Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19045

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,288,583	+		HER17_RS19040	0.61	+0.9
4,288,584	-		HER17_RS19040	0.62	+1.2
4,288,585	+		HER17_RS19040	0.62	+0.8
4,288,585	+		HER17_RS19040	0.62	-0.2
4,288,585	+		HER17_RS19040	0.62	-0.0
4,288,628	+		HER17_RS19040	0.65	-0.5
4,288,629	-		HER17_RS19040	0.65	-0.0
4,288,629	-		HER17_RS19040	0.65	-0.4
4,288,656	-		HER17_RS19040	0.67	+0.1
4,288,664	+		HER17_RS19040	0.68	+0.5
4,288,665	-		HER17_RS19040	0.68	+0.3
4,288,716	-		HER17_RS19040	0.72	-0.9
4,288,726	+		HER17_RS19040	0.73	+0.2
4,288,726	+		HER17_RS19040	0.73	+0.2
4,288,727	-		HER17_RS19040	0.73	-0.3
4,288,727	-		HER17_RS19040	0.73	-2.5
4,288,727	-		HER17_RS19040	0.73	+0.1
4,288,727	-		HER17_RS19040	0.73	+0.5
4,288,727	-		HER17_RS19040	0.73	+0.3
4,288,729	+		HER17_RS19040	0.73	-1.3
4,288,729	+		HER17_RS19040	0.73	-0.4
4,288,730	-		HER17_RS19040	0.73	-0.3
4,288,730	-		HER17_RS19040	0.73	+1.1
4,288,809	+		HER17_RS19040	0.79	-0.1
4,288,887	+		HER17_RS19040	0.85	+0.2
4,288,888	-		HER17_RS19040	0.85	-0.2
4,288,929	+		HER17_RS19040	0.88	+0.9
4,288,929	+		HER17_RS19040	0.88	-1.5
4,288,930	-		HER17_RS19040	0.89	+0.6
4,288,930	-		HER17_RS19040	0.89	+1.9
4,288,930	-		HER17_RS19040	0.89	-0.7
4,288,933	+		HER17_RS19040	0.89	-0.6
4,288,933	+		HER17_RS19040	0.89	-0.5
4,288,933	+		HER17_RS19040	0.89	+0.8
4,288,933	+		HER17_RS19040	0.89	+0.6
4,288,933	+		HER17_RS19040	0.89	+0.5
4,288,933	+		HER17_RS19040	0.89	-0.4
4,288,934	-		HER17_RS19040	0.89	-0.1
4,288,934	-		HER17_RS19040	0.89	+1.5
4,288,934	-		HER17_RS19040	0.89	+1.1
4,288,934	-		HER17_RS19040	0.89	+0.4
4,288,953	-				-0.4
4,288,997	+				+0.3
4,288,997	+				+0.3
4,289,003	+				-0.0
4,289,004	-				-0.9
4,289,034	+				+0.4
4,289,035	-				+0.7
4,289,035	-				+0.7
4,289,079	+				+0.1
4,289,079	+				-0.6
4,289,080	-				+0.1
4,289,080	-				-0.6
4,289,080	-				+0.4
4,289,080	-				+0.6
4,289,080	-				-1.7
4,289,087	+				+0.6
4,289,088	-				+0.1
4,289,116	-				-0.1
4,289,116	-				+0.7
4,289,139	-				+0.2
4,289,157	+				+0.3
4,289,171	-				-0.7
4,289,175	-				+0.2
4,289,175	-				-0.9
4,289,175	-				-0.0
4,289,221	+				-2.1
4,289,229	+				+0.0
4,289,229	+				-0.2
4,289,267	+				-0.0
4,289,267	+				-0.7
4,289,268	-				+1.0
4,289,268	-				-0.5
4,289,277	+				-1.9
4,289,278	-				-1.0
4,289,288	+				+0.1
4,289,288	+				-0.4
4,289,289	-				-0.2
4,289,313	-				+0.2
4,289,313	-				+0.2
4,289,318	-				-0.8
4,289,318	-				-0.6
4,289,318	-				+0.0
4,289,318	-				+0.0
4,289,328	+				+1.2
4,289,329	-				+0.2
4,289,332	+				+0.5
4,289,332	+				-0.9
4,289,332	+				-0.3
4,289,332	+				-0.7
4,289,391	+				+0.0
4,289,391	+				-1.3
4,289,391	+				+0.4
4,289,391	+				-2.0
4,289,392	-				-0.3
4,289,392	-				+1.8
4,289,392	-				+0.2
4,289,393	+				-0.2
4,289,435	+				-0.7
4,289,479	+				+0.1
4,289,479	+				-1.0
4,289,479	+				-0.1
4,289,488	-				+0.0
4,289,488	-				-0.5
4,289,597	+		HER17_RS19045	0.10	-0.2
4,289,597	+		HER17_RS19045	0.10	-0.4
4,289,598	-		HER17_RS19045	0.10	+0.7
4,289,598	-		HER17_RS19045	0.10	+0.7
4,289,598	-		HER17_RS19045	0.10	-0.7
4,289,629	+		HER17_RS19045	0.14	+0.1
4,289,630	-		HER17_RS19045	0.14	-0.4
4,289,659	-		HER17_RS19045	0.18	-0.8
4,289,709	-		HER17_RS19045	0.24	-0.4
4,289,754	+		HER17_RS19045	0.30	-0.4
4,289,755	-		HER17_RS19045	0.30	+0.6
4,289,755	-		HER17_RS19045	0.30	+0.8
4,289,755	-		HER17_RS19045	0.30	+0.5
4,289,755	-		HER17_RS19045	0.30	-0.5
4,289,759	+		HER17_RS19045	0.30	-1.1
4,289,772	-		HER17_RS19045	0.32	-0.4
4,289,781	+		HER17_RS19045	0.33	+0.4
4,289,781	+		HER17_RS19045	0.33	-0.2
4,289,781	+		HER17_RS19045	0.33	+0.2
4,289,782	-		HER17_RS19045	0.33	-0.7
4,289,782	-		HER17_RS19045	0.33	+0.0
4,289,784	+		HER17_RS19045	0.34	-0.1
4,289,785	-		HER17_RS19045	0.34	-0.2
4,289,822	-		HER17_RS19045	0.38	-0.5
4,289,873	+		HER17_RS19045	0.45	+0.8
4,289,873	+		HER17_RS19045	0.45	-0.6
4,289,874	-		HER17_RS19045	0.45	+1.1
4,289,874	-		HER17_RS19045	0.45	+0.9
4,289,928	+		HER17_RS19045	0.52	-0.2
4,289,929	-		HER17_RS19045	0.52	+1.9
4,289,965	+		HER17_RS19045	0.56	-0.7
4,289,965	+		HER17_RS19045	0.56	-0.9
4,289,966	-		HER17_RS19045	0.56	-1.3
4,289,966	-		HER17_RS19045	0.56	-0.9
4,289,966	-		HER17_RS19045	0.56	-0.1
4,289,995	+		HER17_RS19045	0.60	+1.3
4,289,995	+		HER17_RS19045	0.60	+0.2
4,289,995	+		HER17_RS19045	0.60	-0.3
4,289,996	-		HER17_RS19045	0.60	+0.3
4,289,997	+		HER17_RS19045	0.60	-0.4
4,289,997	+		HER17_RS19045	0.60	-0.2
4,289,997	+		HER17_RS19045	0.60	-0.8
4,289,997	+		HER17_RS19045	0.60	+0.5
4,289,997	+		HER17_RS19045	0.60	-0.9
4,289,998	-		HER17_RS19045	0.60	-0.1
4,289,998	-		HER17_RS19045	0.60	-0.4
4,289,998	-		HER17_RS19045	0.60	+0.2
4,289,998	-		HER17_RS19045	0.60	-1.0
4,289,998	-		HER17_RS19045	0.60	-0.1
4,289,998	-		HER17_RS19045	0.60	-0.1
4,289,998	-		HER17_RS19045	0.60	+0.1
4,289,998	-		HER17_RS19045	0.60	+0.9
4,289,998	-		HER17_RS19045	0.60	-0.2
4,290,097	+		HER17_RS19045	0.73	+0.1
4,290,097	+		HER17_RS19045	0.73	+0.2
4,290,099	+		HER17_RS19045	0.73	-1.2
4,290,099	+		HER17_RS19045	0.73	+0.1
4,290,099	+		HER17_RS19045	0.73	+0.8
4,290,100	-		HER17_RS19045	0.73	+0.4
4,290,100	-		HER17_RS19045	0.73	+0.5
4,290,100	-		HER17_RS19045	0.73	-0.0
4,290,100	-		HER17_RS19045	0.73	+1.7
4,290,100	-		HER17_RS19045	0.73	-0.7
4,290,138	+		HER17_RS19045	0.78	-0.4
4,290,138	+		HER17_RS19045	0.78	-1.0
4,290,138	+		HER17_RS19045	0.78	+0.5
4,290,139	-		HER17_RS19045	0.78	+0.4
4,290,139	-		HER17_RS19045	0.78	-0.0
4,290,139	-		HER17_RS19045	0.78	-0.3
4,290,252	+				+0.1
4,290,252	+				-1.5
4,290,252	+				+0.1
4,290,289	+				+0.2
4,290,335	+				+0.4
4,290,359	+				+1.0
4,290,360	-				+0.7
4,290,360	-				+0.3
4,290,360	-				-0.7
4,290,360	-				-1.4
4,290,378	-				+1.2
4,290,378	-				+0.8
4,290,378	-				+0.2
4,290,434	+				-0.1
4,290,435	-				+0.9
4,290,504	+		HER17_RS19050	0.40	+0.3
4,290,505	-		HER17_RS19050	0.41	-0.1
4,290,505	-		HER17_RS19050	0.41	-0.1
4,290,505	-		HER17_RS19050	0.41	+0.3
4,290,610	+				-1.5
4,290,611	-				+0.8
4,290,620	-				+0.5
4,290,620	-				+0.2
4,290,653	+				+0.4
4,290,653	+				+1.9
4,290,653	+				+0.5
4,290,653	+				+0.2
4,290,654	-				+0.5
4,290,654	-				-0.6
4,290,654	-				-0.7
4,290,654	-				-0.2
4,290,710	+				-0.1
4,290,711	-				-0.1
4,290,711	-				+0.8
4,290,799	+		HER17_RS19055	0.27	+0.3
4,290,799	+		HER17_RS19055	0.27	+0.2
4,290,800	-		HER17_RS19055	0.28	+0.8
4,290,802	+		HER17_RS19055	0.29	-0.2
4,290,809	+		HER17_RS19055	0.33	-0.2
4,290,809	+		HER17_RS19055	0.33	-0.0
4,290,810	-		HER17_RS19055	0.34	-0.0
4,290,890	+		HER17_RS19055	0.83	+1.2
4,290,890	+		HER17_RS19055	0.83	+0.4
4,290,890	+		HER17_RS19055	0.83	-1.6
4,290,890	+		HER17_RS19055	0.83	-0.8
4,290,896	+		HER17_RS19055	0.87	-0.7
4,290,897	-		HER17_RS19055	0.88	+0.1
4,290,897	-		HER17_RS19055	0.88	+0.3
4,290,899	-		HER17_RS19055	0.89	+0.3
4,290,916	+				+0.3
4,290,916	+				+1.5
4,290,916	+				+0.5
4,290,916	+				-0.7
4,290,917	-				+0.2
4,290,917	-				-0.4
4,290,917	-				-0.7
4,290,917	-				-0.3
4,290,917	-				+1.9
4,291,006	+				+0.5
4,291,006	+				-1.1
4,291,006	+				+0.0
4,291,006	+				-0.7
4,291,007	-				-0.2
4,291,018	+				-0.0
4,291,019	-				+0.0
4,291,022	+				-0.6
4,291,023	-				+0.8
4,291,052	+				+0.0
4,291,052	+				-0.7
4,291,053	-				-0.7
4,291,063	+				-0.6
4,291,064	-				+0.1
4,291,148	+		HER17_RS19060	0.14	+0.2
4,291,203	-		HER17_RS19060	0.23	-0.1
4,291,218	-		HER17_RS19060	0.26	-0.4
4,291,273	+		HER17_RS19060	0.35	+0.0