Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17100

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,848,940	+		HER17_RS17095	0.51	-0.4
3,848,940	+		HER17_RS17095	0.51	+0.3
3,849,020	+		HER17_RS17095	0.58	+0.3
3,849,039	+		HER17_RS17095	0.60	-0.2
3,849,040	-		HER17_RS17095	0.60	-2.2
3,849,040	-		HER17_RS17095	0.60	-0.4
3,849,040	-		HER17_RS17095	0.60	+1.1
3,849,067	+		HER17_RS17095	0.63	+0.3
3,849,068	-		HER17_RS17095	0.63	-0.4
3,849,296	+		HER17_RS17095	0.84	-0.3
3,849,297	-		HER17_RS17095	0.84	+0.6
3,849,297	-		HER17_RS17095	0.84	+0.0
3,849,376	+				-0.1
3,849,377	-				-0.0
3,849,380	+				-0.1
3,849,380	+				+0.5
3,849,380	+				-0.9
3,849,381	-				-0.4
3,849,381	-				+0.6
3,849,381	-				-0.3
3,849,381	-				-0.4
3,849,402	-				+0.4
3,849,467	+				+0.7
3,849,467	+				+0.5
3,849,467	+				+0.5
3,849,468	-				-0.5
3,849,468	-				-0.4
3,849,468	-				-0.2
3,849,469	+				-1.2
3,849,469	+				+0.9
3,849,469	+				+0.7
3,849,469	+				+0.3
3,849,469	+				+0.8
3,849,470	-				+0.9
3,849,511	+				-0.0
3,849,512	-				-0.2
3,849,512	-				+0.6
3,849,512	-				+1.3
3,849,512	-				+0.3
3,849,515	-				-0.6
3,849,515	-				+1.1
3,849,515	-				-0.2
3,849,515	-				-0.7
3,849,520	+				+0.1
3,849,520	+				+0.6
3,849,520	+				-0.4
3,849,529	+				+0.1
3,849,529	+				-0.6
3,849,529	+				-1.0
3,849,530	-				-0.1
3,849,530	-				-0.6
3,849,532	+				+0.3
3,849,532	+				-1.2
3,849,532	+				+0.2
3,849,532	+				+0.9
3,849,532	+				-0.3
3,849,533	-				-0.6
3,849,533	-				+0.2
3,849,533	-				-0.1
3,849,533	-				-0.2
3,849,533	-				-0.3
3,849,533	-				-0.2
3,849,535	+				-0.3
3,849,535	+				+0.6
3,849,536	-				-0.2
3,849,547	+				+0.6
3,849,550	+				+0.1
3,849,550	+				+1.8
3,849,551	-				+0.2
3,849,551	-				+0.0
3,849,647	+				-1.0
3,849,648	-				+0.0
3,849,669	+				+0.1
3,849,704	+				-0.4
3,849,705	-				-0.1
3,849,705	-				+1.0
3,849,758	+				+0.4
3,849,803	+				+0.1
3,849,803	+				+0.3
3,849,803	+				-0.2
3,849,804	-				+0.5
3,849,804	-				-0.4
3,849,849	+		HER17_RS17100	0.13	+0.4
3,849,849	+		HER17_RS17100	0.13	-0.7
3,849,850	-		HER17_RS17100	0.13	-1.3
3,849,850	-		HER17_RS17100	0.13	-0.5
3,849,850	-		HER17_RS17100	0.13	+0.3
3,849,851	+		HER17_RS17100	0.13	+0.0
3,849,851	+		HER17_RS17100	0.13	-2.1
3,849,852	-		HER17_RS17100	0.13	-1.4
3,849,852	-		HER17_RS17100	0.13	+0.3
3,849,852	-		HER17_RS17100	0.13	-0.1
3,849,852	-		HER17_RS17100	0.13	+2.4
3,849,869	+		HER17_RS17100	0.16	+0.3
3,849,869	+		HER17_RS17100	0.16	+0.1
3,849,994	+		HER17_RS17100	0.32	+0.3
3,849,994	+		HER17_RS17100	0.32	-0.8
3,849,994	+		HER17_RS17100	0.32	-0.7
3,849,994	+		HER17_RS17100	0.32	-1.3
3,849,995	-		HER17_RS17100	0.32	-0.7
3,849,995	-		HER17_RS17100	0.32	+0.8
3,849,995	-		HER17_RS17100	0.32	+0.6
3,849,995	-		HER17_RS17100	0.32	-1.3
3,849,995	-		HER17_RS17100	0.32	+1.2
3,849,995	-		HER17_RS17100	0.32	+0.4
3,849,995	-		HER17_RS17100	0.32	+0.0
3,849,996	+		HER17_RS17100	0.32	-0.8
3,849,996	+		HER17_RS17100	0.32	-0.9
3,849,996	+		HER17_RS17100	0.32	+0.3
3,849,997	-		HER17_RS17100	0.32	-0.1
3,850,061	-		HER17_RS17100	0.40	+0.5
3,850,130	+		HER17_RS17100	0.49	+1.6
3,850,131	-		HER17_RS17100	0.49	+0.5
3,850,220	+		HER17_RS17100	0.61	+0.5
3,850,259	+		HER17_RS17100	0.66	+0.5
3,850,260	-		HER17_RS17100	0.66	+0.8
3,850,300	-		HER17_RS17100	0.71	+0.6
3,850,300	-		HER17_RS17100	0.71	-0.1
3,850,322	+		HER17_RS17100	0.74	-0.6
3,850,341	+		HER17_RS17100	0.76	-1.4
3,850,341	+		HER17_RS17100	0.76	+0.1
3,850,370	-		HER17_RS17100	0.80	+0.3
3,850,370	-		HER17_RS17100	0.80	-3.1
3,850,373	+		HER17_RS17100	0.80	+0.7
3,850,420	-		HER17_RS17100	0.86	-0.1
3,850,490	+				-0.0
3,850,490	+				+0.2
3,850,491	-				-0.2
3,850,518	+				-0.3
3,850,518	+				-1.0
3,850,518	+				+0.0
3,850,521	+				+0.6
3,850,522	-				-0.6
3,850,522	-				+0.5
3,850,522	-				+0.3
3,850,522	-				+0.0
3,850,558	+				-0.3
3,850,642	-				-0.7
3,850,642	-				+0.4
3,850,678	+				+0.3
3,850,678	+				-0.5
3,850,678	+				-0.2
3,850,678	+				+1.7
3,850,679	-				-0.7
3,850,679	-				+1.0
3,850,679	-				-0.1
3,850,723	-				-0.5
3,850,742	+				-0.3
3,850,742	+				+0.8
3,850,785	+				+0.3
3,850,855	+		HER17_RS17105	0.20	+0.8
3,850,856	-		HER17_RS17105	0.20	-0.7
3,850,893	-		HER17_RS17105	0.26	-0.7
3,850,937	+		HER17_RS17105	0.32	+0.2
3,850,938	-		HER17_RS17105	0.32	+1.0
3,851,236	+		HER17_RS17105	0.77	-0.5
3,851,237	-		HER17_RS17105	0.78	-0.1
3,851,326	+				-1.2
3,851,330	+				-0.6
3,851,367	+				-0.4
3,851,368	-				+0.9
3,851,396	+				-0.8
3,851,415	+				+1.5
3,851,416	-				+0.9
3,851,492	-		HER17_RS17110	0.15	+0.9
3,851,496	+		HER17_RS17110	0.16	-0.1
3,851,497	-		HER17_RS17110	0.16	+0.2
3,851,506	+		HER17_RS17110	0.18	+0.4
3,851,506	+		HER17_RS17110	0.18	-0.8
3,851,506	+		HER17_RS17110	0.18	-0.0
3,851,506	+		HER17_RS17110	0.18	-0.3
3,851,507	-		HER17_RS17110	0.18	+0.7
3,851,508	+		HER17_RS17110	0.18	+0.8
3,851,508	+		HER17_RS17110	0.18	-1.4
3,851,508	+		HER17_RS17110	0.18	+0.4
3,851,508	+		HER17_RS17110	0.18	-0.3
3,851,508	+		HER17_RS17110	0.18	+1.7
3,851,508	+		HER17_RS17110	0.18	-0.1
3,851,508	+		HER17_RS17110	0.18	-0.2
3,851,509	-		HER17_RS17110	0.18	+0.6
3,851,509	-		HER17_RS17110	0.18	-0.6
3,851,509	-		HER17_RS17110	0.18	+0.0
3,851,509	-		HER17_RS17110	0.18	-0.5
3,851,509	-		HER17_RS17110	0.18	-0.9
3,851,509	-		HER17_RS17110	0.18	-1.0
3,851,509	-		HER17_RS17110	0.18	+1.6
3,851,509	-		HER17_RS17110	0.18	+0.1
3,851,509	-		HER17_RS17110	0.18	-0.1
3,851,513	+		HER17_RS17110	0.19	+1.2
3,851,521	-		HER17_RS17110	0.21	+1.1