Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16925

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,804,920	+				-0.3
3,804,921	-				-0.7
3,804,967	-				-0.2
3,805,045	+				-0.4
3,805,046	-				-0.0
3,805,046	-				+1.0
3,805,074	+				-0.6
3,805,110	+				-0.2
3,805,209	+		HER17_RS16920	0.14	+0.2
3,805,210	-		HER17_RS16920	0.14	+0.0
3,805,210	-		HER17_RS16920	0.14	+0.1
3,805,210	-		HER17_RS16920	0.14	-0.8
3,805,228	-		HER17_RS16920	0.17	-0.5
3,805,260	-		HER17_RS16920	0.23	-0.0
3,805,353	+		HER17_RS16920	0.40	-1.0
3,805,418	+		HER17_RS16920	0.52	+0.6
3,805,432	-		HER17_RS16920	0.55	-1.1
3,805,432	-		HER17_RS16920	0.55	+1.0
3,805,432	-		HER17_RS16920	0.55	-0.2
3,805,434	+		HER17_RS16920	0.55	-0.8
3,805,445	+		HER17_RS16920	0.57	+0.2
3,805,445	+		HER17_RS16920	0.57	+0.8
3,805,446	-		HER17_RS16920	0.57	+0.9
3,805,451	+		HER17_RS16920	0.58	+0.4
3,805,679	-				+0.4
3,805,705	+				+0.2
3,805,705	+				-0.1
3,805,705	+				-0.5
3,805,707	+				-0.4
3,805,707	+				-0.2
3,805,738	-				-0.0
3,805,738	-				-0.6
3,805,739	+				-0.2
3,805,739	+				+0.7
3,805,739	+				-0.3
3,805,739	+				+0.4
3,805,740	-				+1.0
3,805,743	+				+0.2
3,805,743	+				+1.2
3,805,743	+				+0.3
3,805,744	-				-1.1
3,805,744	-				+0.3
3,805,748	+				+1.0
3,805,748	+				-0.4
3,805,796	-				+0.4
3,805,799	+				-0.3
3,805,799	+				+0.5
3,805,799	+				+0.7
3,805,799	+				+1.3
3,805,800	-				+0.7
3,805,804	-				+0.5
3,805,804	-				-1.0
3,805,808	-				+0.8
3,805,808	-				+0.2
3,805,808	-				-1.1
3,805,808	-				-0.2
3,805,829	-				-0.6
3,805,829	-				-1.8
3,805,831	+				-0.1
3,805,831	+				+0.1
3,805,873	+				-0.4
3,805,895	-				+0.0
3,805,895	-				+0.6
3,805,921	+				+0.1
3,805,988	+				-0.1
3,805,989	-				+0.1
3,806,013	+				-1.9
3,806,057	-				-0.5
3,806,060	+				+0.1
3,806,060	+				-0.7
3,806,060	+				-0.4
3,806,061	-				+0.5
3,806,061	-				+0.6
3,806,164	-		HER17_RS16925	0.14	-0.2
3,806,226	+		HER17_RS16925	0.16	-0.3
3,806,226	+		HER17_RS16925	0.16	+0.8
3,806,226	+		HER17_RS16925	0.16	-0.2
3,806,246	-		HER17_RS16925	0.17	-0.4
3,806,246	-		HER17_RS16925	0.17	+0.3
3,806,248	+		HER17_RS16925	0.17	+0.6
3,806,274	-		HER17_RS16925	0.18	+0.2
3,806,274	-		HER17_RS16925	0.18	-0.3
3,806,274	-		HER17_RS16925	0.18	+0.5
3,806,274	-		HER17_RS16925	0.18	-0.4
3,806,339	+		HER17_RS16925	0.21	+0.2
3,806,339	+		HER17_RS16925	0.21	-0.2
3,806,339	+		HER17_RS16925	0.21	+0.5
3,806,339	+		HER17_RS16925	0.21	+0.8
3,806,358	+		HER17_RS16925	0.22	-0.2
3,806,358	+		HER17_RS16925	0.22	+0.1
3,806,359	-		HER17_RS16925	0.22	+0.7
3,806,368	+		HER17_RS16925	0.22	+0.6
3,806,393	+		HER17_RS16925	0.23	-1.1
3,806,394	-		HER17_RS16925	0.23	-0.0
3,806,394	-		HER17_RS16925	0.23	+0.2
3,806,453	+		HER17_RS16925	0.26	-0.1
3,806,516	+		HER17_RS16925	0.28	+0.1
3,806,516	+		HER17_RS16925	0.28	+0.3
3,806,517	-		HER17_RS16925	0.28	+0.4
3,806,571	-		HER17_RS16925	0.30	-1.0
3,806,571	-		HER17_RS16925	0.30	-0.0
3,806,593	+		HER17_RS16925	0.31	+1.7
3,806,593	+		HER17_RS16925	0.31	-0.5
3,806,593	+		HER17_RS16925	0.31	+0.2
3,806,594	-		HER17_RS16925	0.31	-0.1
3,806,597	+		HER17_RS16925	0.31	-0.1
3,806,773	+		HER17_RS16925	0.38	+0.1
3,806,894	+		HER17_RS16925	0.43	+0.4
3,806,911	+		HER17_RS16925	0.44	-0.8
3,806,924	-		HER17_RS16925	0.44	-0.8
3,806,999	+		HER17_RS16925	0.47	+0.4
3,807,000	-		HER17_RS16925	0.47	-0.1
3,807,010	+		HER17_RS16925	0.48	-0.4
3,807,010	+		HER17_RS16925	0.48	+0.2
3,807,063	-		HER17_RS16925	0.50	+1.6
3,807,122	+		HER17_RS16925	0.52	-0.5
3,807,123	-		HER17_RS16925	0.52	+0.6
3,807,164	-		HER17_RS16925	0.54	-1.3
3,807,167	+		HER17_RS16925	0.54	-0.4
3,807,167	+		HER17_RS16925	0.54	+0.3
3,807,168	-		HER17_RS16925	0.54	+0.1
3,807,227	+		HER17_RS16925	0.57	+0.2
3,807,227	+		HER17_RS16925	0.57	-0.0
3,807,228	-		HER17_RS16925	0.57	-0.2
3,807,246	-		HER17_RS16925	0.57	-0.4
3,807,246	-		HER17_RS16925	0.57	-0.4
3,807,296	+		HER17_RS16925	0.59	-1.0
3,807,296	+		HER17_RS16925	0.59	-0.9
3,807,297	-		HER17_RS16925	0.59	-0.0
3,807,297	-		HER17_RS16925	0.59	+1.0
3,807,366	-		HER17_RS16925	0.62	+0.2
3,807,374	+		HER17_RS16925	0.62	+0.7
3,807,374	+		HER17_RS16925	0.62	-2.9
3,807,375	-		HER17_RS16925	0.62	-0.4
3,807,375	-		HER17_RS16925	0.62	-0.5
3,807,376	+		HER17_RS16925	0.63	+0.3
3,807,389	+		HER17_RS16925	0.63	-0.4
3,807,390	-		HER17_RS16925	0.63	-0.3
3,807,437	+		HER17_RS16925	0.65	-0.4
3,807,437	+		HER17_RS16925	0.65	+0.2
3,807,457	+		HER17_RS16925	0.66	+0.4
3,807,458	-		HER17_RS16925	0.66	-0.7
3,807,464	-		HER17_RS16925	0.66	-0.4
3,807,464	-		HER17_RS16925	0.66	+0.8
3,807,524	+		HER17_RS16925	0.68	-1.8
3,807,525	-		HER17_RS16925	0.68	-0.2
3,807,538	+		HER17_RS16925	0.69	+0.4
3,807,538	+		HER17_RS16925	0.69	+0.0
3,807,539	-		HER17_RS16925	0.69	-0.8
3,807,569	+		HER17_RS16925	0.70	-0.5
3,807,570	-		HER17_RS16925	0.70	+0.6
3,807,585	-		HER17_RS16925	0.71	-0.7
3,807,614	+		HER17_RS16925	0.72	-0.3
3,807,614	+		HER17_RS16925	0.72	-1.4
3,807,683	+		HER17_RS16925	0.75	+0.6
3,807,683	+		HER17_RS16925	0.75	-0.0
3,807,683	+		HER17_RS16925	0.75	+0.4
3,807,684	-		HER17_RS16925	0.75	+1.1
3,807,698	+		HER17_RS16925	0.75	+0.6
3,807,698	+		HER17_RS16925	0.75	-0.1
3,807,698	+		HER17_RS16925	0.75	-0.2
3,807,698	+		HER17_RS16925	0.75	+0.3
3,807,698	+		HER17_RS16925	0.75	+0.2
3,807,698	+		HER17_RS16925	0.75	-0.7
3,807,698	+		HER17_RS16925	0.75	+0.1
3,807,699	-		HER17_RS16925	0.75	+0.7
3,807,699	-		HER17_RS16925	0.75	+0.9
3,807,699	-		HER17_RS16925	0.75	+0.3
3,807,699	-		HER17_RS16925	0.75	-0.3
3,807,700	+		HER17_RS16925	0.75	-0.0
3,807,701	-		HER17_RS16925	0.76	-0.7
3,807,765	-		HER17_RS16925	0.78	-0.4
3,807,765	-		HER17_RS16925	0.78	+0.4
3,807,948	-		HER17_RS16925	0.85	+0.7
3,807,950	+		HER17_RS16925	0.85	-1.0
3,807,950	+		HER17_RS16925	0.85	-0.4
3,807,950	+		HER17_RS16925	0.85	+0.8
3,807,951	-		HER17_RS16925	0.86	-0.2
3,807,975	+		HER17_RS16925	0.86	+0.0
3,808,068	+				-0.8
3,808,190	+				+0.7
3,808,190	+				-0.7
3,808,190	+				+0.4
3,808,191	-				+0.5
3,808,275	+				-0.2
3,808,275	+				+0.9
3,808,276	-				-0.4
3,808,276	-				+0.3
3,808,306	+				-0.2
3,808,307	-				+0.1
3,808,307	-				+0.6
3,808,310	+				+0.5
3,808,311	-				+0.4
3,808,311	-				-0.5
3,808,345	-				+0.1
3,808,345	-				+1.4
3,808,420	-				+0.4
3,808,551	-		HER17_RS16930	0.27	+0.6
3,808,553	+		HER17_RS16930	0.27	+0.1
3,808,553	+		HER17_RS16930	0.27	-0.0
3,808,554	-		HER17_RS16930	0.27	-0.0
3,808,588	+		HER17_RS16930	0.32	-0.7
3,808,614	-		HER17_RS16930	0.35	-0.6
3,808,685	+		HER17_RS16930	0.45	+0.2
3,808,686	-		HER17_RS16930	0.45	-0.0
3,808,721	+		HER17_RS16930	0.49	+0.2
3,808,721	+		HER17_RS16930	0.49	+0.8
3,808,722	-		HER17_RS16930	0.50	+0.1
3,808,727	-		HER17_RS16930	0.50	-0.3
3,808,729	+		HER17_RS16930	0.51	-0.6
3,808,730	-		HER17_RS16930	0.51	+0.4
3,808,730	-		HER17_RS16930	0.51	-0.6
3,808,755	-		HER17_RS16930	0.54	+3.2
3,808,755	-		HER17_RS16930	0.54	+0.4
3,808,781	-		HER17_RS16930	0.57	-0.1
3,808,866	+		HER17_RS16930	0.69	+0.4
3,808,869	+		HER17_RS16930	0.69	-0.2
3,808,869	+		HER17_RS16930	0.69	-0.1
3,808,869	+		HER17_RS16930	0.69	-0.3
3,808,869	+		HER17_RS16930	0.69	-0.3
3,808,870	-		HER17_RS16930	0.69	+1.1
3,808,870	-		HER17_RS16930	0.69	+0.1
3,809,010	+		HER17_RS16930	0.88	-1.1
3,809,010	+		HER17_RS16930	0.88	+0.3
3,809,011	-		HER17_RS16930	0.88	+0.2
3,809,011	-		HER17_RS16930	0.88	+0.8
3,809,011	-		HER17_RS16930	0.88	-0.5
3,809,016	+		HER17_RS16930	0.89	-0.2
3,809,017	-		HER17_RS16930	0.89	-2.1
3,809,019	+		HER17_RS16930	0.89	-0.6
3,809,019	+		HER17_RS16930	0.89	-0.0
3,809,020	-		HER17_RS16930	0.89	+0.6
3,809,020	-		HER17_RS16930	0.89	-0.1
3,809,057	+				+1.6
3,809,093	+				-0.6
3,809,094	-				-0.1
3,809,098	-				+0.1
3,809,098	-				+0.2
3,809,098	-				+1.2
3,809,102	+				-1.0
3,809,102	+				+1.1
3,809,102	+				+1.3
3,809,103	-				-0.0
3,809,247	-		HER17_RS16935	0.13	+0.3