Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15485

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,470,865	+		HER17_RS15480	0.62	-0.4
3,470,865	+		HER17_RS15480	0.62	+0.7
3,470,865	+		HER17_RS15480	0.62	-0.4
3,470,908	+		HER17_RS15480	0.64	-0.9
3,470,909	-		HER17_RS15480	0.64	-0.9
3,470,946	-		HER17_RS15480	0.66	+0.3
3,470,946	-		HER17_RS15480	0.66	+0.2
3,470,974	+		HER17_RS15480	0.67	+0.4
3,470,974	+		HER17_RS15480	0.67	-0.4
3,470,978	+		HER17_RS15480	0.68	-0.5
3,470,993	+		HER17_RS15480	0.68	-0.7
3,470,993	+		HER17_RS15480	0.68	+0.8
3,470,993	+		HER17_RS15480	0.68	-1.1
3,470,994	-		HER17_RS15480	0.68	+0.4
3,470,994	-		HER17_RS15480	0.68	-0.0
3,470,994	-		HER17_RS15480	0.68	-0.3
3,471,005	+		HER17_RS15480	0.69	+1.4
3,471,005	+		HER17_RS15480	0.69	+0.3
3,471,006	-		HER17_RS15480	0.69	-0.5
3,471,006	-		HER17_RS15480	0.69	-0.3
3,471,015	-		HER17_RS15480	0.69	+0.2
3,471,040	+		HER17_RS15480	0.71	+0.7
3,471,041	-		HER17_RS15480	0.71	-0.8
3,471,043	+		HER17_RS15480	0.71	-0.2
3,471,043	+		HER17_RS15480	0.71	+1.2
3,471,052	+		HER17_RS15480	0.71	-0.4
3,471,082	+		HER17_RS15480	0.73	+1.0
3,471,082	+		HER17_RS15480	0.73	-0.1
3,471,089	+		HER17_RS15480	0.73	+0.6
3,471,114	+		HER17_RS15480	0.74	+0.9
3,471,114	+		HER17_RS15480	0.74	-0.7
3,471,115	-		HER17_RS15480	0.74	-0.3
3,471,241	-		HER17_RS15480	0.80	-0.1
3,471,241	-		HER17_RS15480	0.80	-0.3
3,471,281	+		HER17_RS15480	0.82	+0.1
3,471,281	+		HER17_RS15480	0.82	-0.2
3,471,281	+		HER17_RS15480	0.82	+0.0
3,471,281	+		HER17_RS15480	0.82	-0.3
3,471,281	+		HER17_RS15480	0.82	+0.4
3,471,282	-		HER17_RS15480	0.82	+0.1
3,471,282	-		HER17_RS15480	0.82	-1.3
3,471,282	-		HER17_RS15480	0.82	+0.6
3,471,282	-		HER17_RS15480	0.82	+0.0
3,471,282	-		HER17_RS15480	0.82	-0.2
3,471,287	+		HER17_RS15480	0.82	-0.4
3,471,287	+		HER17_RS15480	0.82	-0.4
3,471,288	-		HER17_RS15480	0.82	-0.9
3,471,334	+		HER17_RS15480	0.84	-1.3
3,471,334	+		HER17_RS15480	0.84	+0.5
3,471,334	+		HER17_RS15480	0.84	+0.3
3,471,334	+		HER17_RS15480	0.84	+0.2
3,471,334	+		HER17_RS15480	0.84	-0.3
3,471,335	-		HER17_RS15480	0.84	-0.0
3,471,335	-		HER17_RS15480	0.84	+0.1
3,471,355	+		HER17_RS15480	0.85	+0.7
3,471,440	+		HER17_RS15480	0.89	-0.2
3,471,441	-		HER17_RS15480	0.89	+0.1
3,471,479	+				+0.6
3,471,479	+				-0.4
3,471,491	+				-0.6
3,471,491	+				-1.8
3,471,491	+				-0.9
3,471,492	-				-0.9
3,471,492	-				-0.8
3,471,492	-				-0.5
3,471,492	-				+1.0
3,471,540	-				+0.1
3,471,587	+				+0.8
3,471,587	+				+0.7
3,471,587	+				+0.1
3,471,587	+				+0.1
3,471,588	-				+0.1
3,471,588	-				+2.4
3,471,588	-				-0.4
3,471,588	-				+0.7
3,471,679	-				-0.3
3,471,713	+				-0.8
3,471,713	+				-1.1
3,471,759	+				-0.2
3,471,761	+				-0.3
3,471,761	+				-0.3
3,471,762	-				-0.3
3,471,762	-				-0.4
3,471,764	+				+0.0
3,471,764	+				+1.0
3,471,764	+				-1.3
3,471,765	-				-0.2
3,471,776	-				-0.3
3,471,816	-				+0.1
3,471,816	-				+1.4
3,471,820	-				-0.0
3,471,827	+				+2.0
3,471,828	-				+0.7
3,471,828	-				-0.7
3,471,838	+				+0.4
3,471,838	+				-0.2
3,471,838	+				+0.1
3,471,838	+				+0.0
3,471,839	-				+0.4
3,471,953	+		HER17_RS15485	0.20	+0.4
3,471,953	+		HER17_RS15485	0.20	+0.2
3,471,984	-		HER17_RS15485	0.25	+0.1
3,471,994	+		HER17_RS15485	0.27	+0.4
3,471,995	-		HER17_RS15485	0.27	-0.9
3,471,995	-		HER17_RS15485	0.27	-0.9
3,471,995	-		HER17_RS15485	0.27	+0.1
3,471,995	-		HER17_RS15485	0.27	+1.1
3,471,995	-		HER17_RS15485	0.27	-1.8
3,472,047	+		HER17_RS15485	0.36	-1.9
3,472,047	+		HER17_RS15485	0.36	-0.3
3,472,048	-		HER17_RS15485	0.36	-0.2
3,472,048	-		HER17_RS15485	0.36	-2.1
3,472,048	-		HER17_RS15485	0.36	-0.0
3,472,048	-		HER17_RS15485	0.36	-0.5
3,472,048	-		HER17_RS15485	0.36	+0.6
3,472,065	+		HER17_RS15485	0.39	-1.1
3,472,072	+		HER17_RS15485	0.40	-0.0
3,472,073	-		HER17_RS15485	0.41	-0.4
3,472,136	+		HER17_RS15485	0.52	-0.9
3,472,170	-		HER17_RS15485	0.57	-0.6
3,472,186	-		HER17_RS15485	0.60	+1.0
3,472,186	-		HER17_RS15485	0.60	+2.6
3,472,193	+		HER17_RS15485	0.61	-0.1
3,472,194	-		HER17_RS15485	0.62	+0.1
3,472,202	+		HER17_RS15485	0.63	+0.6
3,472,203	-		HER17_RS15485	0.63	-0.5
3,472,203	-		HER17_RS15485	0.63	-0.6
3,472,203	-		HER17_RS15485	0.63	+1.3
3,472,244	+		HER17_RS15485	0.70	-1.9
3,472,244	+		HER17_RS15485	0.70	+0.3
3,472,244	+		HER17_RS15485	0.70	-0.1
3,472,245	-		HER17_RS15485	0.70	-0.0
3,472,245	-		HER17_RS15485	0.70	-0.9
3,472,266	+		HER17_RS15485	0.74	-0.4
3,472,266	+		HER17_RS15485	0.74	+0.7
3,472,346	+		HER17_RS15485	0.88	-0.1
3,472,346	+		HER17_RS15485	0.88	+0.8
3,472,346	+		HER17_RS15485	0.88	-0.2
3,472,346	+		HER17_RS15485	0.88	-0.9
3,472,346	+		HER17_RS15485	0.88	+0.4
3,472,346	+		HER17_RS15485	0.88	-1.1
3,472,346	+		HER17_RS15485	0.88	-0.5
3,472,346	+		HER17_RS15485	0.88	+0.6
3,472,346	+		HER17_RS15485	0.88	-0.3
3,472,346	+		HER17_RS15485	0.88	-1.8
3,472,346	+		HER17_RS15485	0.88	-1.6
3,472,346	+		HER17_RS15485	0.88	+1.0
3,472,347	-		HER17_RS15485	0.88	+0.6
3,472,347	-		HER17_RS15485	0.88	-0.0
3,472,347	-		HER17_RS15485	0.88	+0.3
3,472,347	-		HER17_RS15485	0.88	-1.6
3,472,347	-		HER17_RS15485	0.88	-0.4
3,472,348	+		HER17_RS15485	0.88	-0.6
3,472,348	+		HER17_RS15485	0.88	-0.2
3,472,349	-		HER17_RS15485	0.89	-0.4
3,472,412	+				+1.8
3,472,413	-				-0.7
3,472,417	+				+0.4
3,472,418	-				-0.7
3,472,418	-				-0.5
3,472,474	+				-0.1
3,472,474	+				+0.4
3,472,475	-				-0.4
3,472,475	-				-0.3
3,472,475	-				+0.4
3,472,485	+				+0.4
3,472,486	-				-0.2
3,472,486	-				+0.4
3,472,490	-				+0.4
3,472,490	-				-0.3
3,472,532	-				-0.1
3,472,532	-				+0.4
3,472,532	-				-0.6
3,472,532	-				-0.2
3,472,537	-				-0.1
3,472,604	+				-0.8
3,472,652	+				+0.1
3,472,672	+				-0.4
3,472,674	+				-1.1
3,472,728	-				-0.3
3,472,828	+				-0.4
3,472,926	-		HER17_RS15490	0.10	+0.2
3,472,947	-		HER17_RS15490	0.11	-0.8
3,472,947	-		HER17_RS15490	0.11	-1.8
3,472,957	-		HER17_RS15490	0.11	-0.5
3,472,957	-		HER17_RS15490	0.11	+0.4
3,472,958	+		HER17_RS15490	0.11	+1.0
3,472,958	+		HER17_RS15490	0.11	+0.5
3,472,959	-		HER17_RS15490	0.11	+1.2
3,473,010	-		HER17_RS15490	0.13	-0.2
3,473,047	+		HER17_RS15490	0.15	+1.1
3,473,048	-		HER17_RS15490	0.15	-0.3
3,473,066	+		HER17_RS15490	0.16	+1.1
3,473,067	-		HER17_RS15490	0.16	-1.1
3,473,152	+		HER17_RS15490	0.19	+0.1
3,473,153	-		HER17_RS15490	0.19	+0.4
3,473,153	-		HER17_RS15490	0.19	+0.3
3,473,153	-		HER17_RS15490	0.19	+0.6
3,473,176	-		HER17_RS15490	0.20	+0.3
3,473,233	+		HER17_RS15490	0.23	+0.4
3,473,233	+		HER17_RS15490	0.23	+1.8
3,473,233	+		HER17_RS15490	0.23	-0.3
3,473,329	+		HER17_RS15490	0.27	-2.2
3,473,330	-		HER17_RS15490	0.27	-0.3
3,473,375	-		HER17_RS15490	0.29	+0.7
3,473,414	+		HER17_RS15490	0.30	+0.7
3,473,414	+		HER17_RS15490	0.30	+1.3