Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14770

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,322,723	+		HER17_RS14765	0.18	+0.1
3,322,742	-		HER17_RS14765	0.20	-0.3
3,322,826	+		HER17_RS14765	0.28	+0.2
3,322,826	+		HER17_RS14765	0.28	-1.4
3,322,827	-		HER17_RS14765	0.28	-0.0
3,322,827	-		HER17_RS14765	0.28	+0.8
3,322,829	+		HER17_RS14765	0.28	-0.8
3,322,830	-		HER17_RS14765	0.28	-0.2
3,322,830	-		HER17_RS14765	0.28	-0.2
3,322,837	+		HER17_RS14765	0.29	-1.8
3,322,844	+		HER17_RS14765	0.30	-0.7
3,322,844	+		HER17_RS14765	0.30	+0.4
3,322,844	+		HER17_RS14765	0.30	+0.4
3,322,863	+		HER17_RS14765	0.32	+0.5
3,323,001	+		HER17_RS14765	0.45	+0.1
3,323,002	-		HER17_RS14765	0.45	-0.7
3,323,002	-		HER17_RS14765	0.45	-0.4
3,323,029	-		HER17_RS14765	0.48	-0.3
3,323,053	+		HER17_RS14765	0.50	-0.3
3,323,054	-		HER17_RS14765	0.50	+0.9
3,323,057	-		HER17_RS14765	0.51	+1.3
3,323,057	-		HER17_RS14765	0.51	+0.5
3,323,057	-		HER17_RS14765	0.51	-0.8
3,323,069	+		HER17_RS14765	0.52	+0.1
3,323,070	-		HER17_RS14765	0.52	-0.4
3,323,135	-		HER17_RS14765	0.58	+0.6
3,323,135	-		HER17_RS14765	0.58	+0.5
3,323,135	-		HER17_RS14765	0.58	+0.5
3,323,147	+		HER17_RS14765	0.59	+0.6
3,323,147	+		HER17_RS14765	0.59	-0.9
3,323,147	+		HER17_RS14765	0.59	+0.6
3,323,147	+		HER17_RS14765	0.59	-0.6
3,323,147	+		HER17_RS14765	0.59	-2.5
3,323,147	+		HER17_RS14765	0.59	-0.0
3,323,147	+		HER17_RS14765	0.59	+0.2
3,323,147	+		HER17_RS14765	0.59	+0.6
3,323,148	-		HER17_RS14765	0.60	-0.8
3,323,148	-		HER17_RS14765	0.60	-0.7
3,323,148	-		HER17_RS14765	0.60	-0.1
3,323,148	-		HER17_RS14765	0.60	+0.1
3,323,149	+		HER17_RS14765	0.60	-0.3
3,323,149	+		HER17_RS14765	0.60	+0.2
3,323,150	-		HER17_RS14765	0.60	-0.1
3,323,237	+		HER17_RS14765	0.68	+0.1
3,323,238	-		HER17_RS14765	0.68	-0.4
3,323,238	-		HER17_RS14765	0.68	-1.3
3,323,238	-		HER17_RS14765	0.68	-0.5
3,323,270	-		HER17_RS14765	0.71	+1.0
3,323,307	+		HER17_RS14765	0.75	+1.3
3,323,308	-		HER17_RS14765	0.75	-1.0
3,323,308	-		HER17_RS14765	0.75	+0.7
3,323,311	+		HER17_RS14765	0.75	+0.3
3,323,312	-		HER17_RS14765	0.76	+0.1
3,323,312	-		HER17_RS14765	0.76	+0.0
3,323,315	+		HER17_RS14765	0.76	+0.3
3,323,315	+		HER17_RS14765	0.76	+0.5
3,323,316	-		HER17_RS14765	0.76	+1.3
3,323,316	-		HER17_RS14765	0.76	+0.1
3,323,316	-		HER17_RS14765	0.76	+0.5
3,323,339	+		HER17_RS14765	0.78	+0.8
3,323,340	-		HER17_RS14765	0.78	+0.7
3,323,340	-		HER17_RS14765	0.78	-0.0
3,323,346	+		HER17_RS14765	0.79	+0.7
3,323,346	+		HER17_RS14765	0.79	-0.7
3,323,347	-		HER17_RS14765	0.79	-0.9
3,323,349	+		HER17_RS14765	0.79	-0.3
3,323,350	-		HER17_RS14765	0.79	+0.9
3,323,368	+		HER17_RS14765	0.81	+1.7
3,323,435	+		HER17_RS14765	0.88	-0.0
3,323,435	+		HER17_RS14765	0.88	+0.4
3,323,435	+		HER17_RS14765	0.88	-0.3
3,323,470	+				+0.2
3,323,470	+				-0.9
3,323,471	-				+0.2
3,323,650	+				+1.1
3,323,650	+				-1.1
3,323,666	+				+0.1
3,323,698	-				+0.0
3,323,885	-		HER17_RS14770	0.20	-1.5
3,324,062	-		HER17_RS14770	0.36	+0.7
3,324,113	+		HER17_RS14770	0.41	-2.0
3,324,113	+		HER17_RS14770	0.41	-1.9
3,324,114	-		HER17_RS14770	0.41	-0.1
3,324,124	+		HER17_RS14770	0.42	-0.0
3,324,124	+		HER17_RS14770	0.42	-1.7
3,324,124	+		HER17_RS14770	0.42	-0.3
3,324,125	-		HER17_RS14770	0.43	+0.0
3,324,141	+		HER17_RS14770	0.44	-0.4
3,324,141	+		HER17_RS14770	0.44	+0.0
3,324,141	+		HER17_RS14770	0.44	+0.2
3,324,141	+		HER17_RS14770	0.44	-1.7
3,324,161	-		HER17_RS14770	0.46	+0.2
3,324,161	-		HER17_RS14770	0.46	-0.8
3,324,174	-		HER17_RS14770	0.47	-0.3
3,324,211	+		HER17_RS14770	0.51	+1.1
3,324,242	+		HER17_RS14770	0.54	-0.7
3,324,242	+		HER17_RS14770	0.54	+0.6
3,324,242	+		HER17_RS14770	0.54	+0.4
3,324,242	+		HER17_RS14770	0.54	-0.5
3,324,242	+		HER17_RS14770	0.54	+1.7
3,324,243	-		HER17_RS14770	0.54	-0.5
3,324,243	-		HER17_RS14770	0.54	-0.5
3,324,243	-		HER17_RS14770	0.54	+0.5
3,324,246	+		HER17_RS14770	0.54	-0.2
3,324,246	+		HER17_RS14770	0.54	-0.1
3,324,246	+		HER17_RS14770	0.54	-0.6
3,324,246	+		HER17_RS14770	0.54	+0.7
3,324,246	+		HER17_RS14770	0.54	-0.9
3,324,246	+		HER17_RS14770	0.54	+0.3
3,324,247	-		HER17_RS14770	0.54	+1.3
3,324,247	-		HER17_RS14770	0.54	+0.8
3,324,247	-		HER17_RS14770	0.54	+0.4
3,324,247	-		HER17_RS14770	0.54	+2.3
3,324,247	-		HER17_RS14770	0.54	-0.5
3,324,247	-		HER17_RS14770	0.54	+0.4
3,324,247	-		HER17_RS14770	0.54	+2.1
3,324,274	+		HER17_RS14770	0.57	+0.0
3,324,277	+		HER17_RS14770	0.57	-0.7
3,324,277	+		HER17_RS14770	0.57	-0.6
3,324,278	-		HER17_RS14770	0.57	+0.2
3,324,278	-		HER17_RS14770	0.57	-0.8
3,324,278	-		HER17_RS14770	0.57	+1.0
3,324,278	-		HER17_RS14770	0.57	-0.4
3,324,278	-		HER17_RS14770	0.57	+0.7
3,324,278	-		HER17_RS14770	0.57	-0.1
3,324,424	+		HER17_RS14770	0.71	-0.1
3,324,424	+		HER17_RS14770	0.71	-0.3
3,324,425	-		HER17_RS14770	0.71	-2.3
3,324,428	+		HER17_RS14770	0.71	-0.4
3,324,429	-		HER17_RS14770	0.72	-0.1
3,324,473	+		HER17_RS14770	0.76	-0.6
3,324,473	+		HER17_RS14770	0.76	+0.3
3,324,527	+		HER17_RS14770	0.81	+0.1
3,324,592	+		HER17_RS14770	0.87	+0.5
3,324,689	-				-1.5
3,324,706	+				+0.7
3,324,747	-				+0.3
3,324,774	+				+0.3
3,324,795	-				-0.1
3,324,795	-				+0.9
3,324,833	+				-2.2
3,324,833	+				+0.0
3,324,834	-				-0.3
3,324,834	-				-1.3
3,324,834	-				+0.9
3,324,891	-				-0.2
3,325,084	-		HER17_RS14775	0.48	-0.2
3,325,089	+		HER17_RS14775	0.49	+0.1
3,325,090	-		HER17_RS14775	0.50	-0.1
3,325,099	+		HER17_RS14775	0.52	-1.7
3,325,100	-		HER17_RS14775	0.52	+0.9
3,325,164	+		HER17_RS14775	0.66	-0.5
3,325,167	+		HER17_RS14775	0.67	-0.1
3,325,168	-		HER17_RS14775	0.67	-0.0
3,325,168	-		HER17_RS14775	0.67	+0.1
3,325,168	-		HER17_RS14775	0.67	-0.1
3,325,184	+		HER17_RS14775	0.70	+0.7
3,325,227	+		HER17_RS14775	0.80	-1.8
3,325,228	-		HER17_RS14775	0.80	-1.3
3,325,228	-		HER17_RS14775	0.80	-0.1
3,325,308	+				-0.2
3,325,309	-				-0.3
3,325,316	-				+0.9
3,325,364	+				+0.0
3,325,365	-				-0.1
3,325,392	-				-0.3
3,325,397	+				+0.5
3,325,398	-				-0.3
3,325,398	-				+1.3
3,325,404	+				+0.0
3,325,404	+				-1.0
3,325,404	+				+0.3
3,325,405	-				+0.2
3,325,405	-				+0.9
3,325,405	-				+0.6
3,325,406	+				+0.1
3,325,406	+				-0.5
3,325,406	+				-1.1
3,325,407	-				+0.4
3,325,407	-				-0.1
3,325,407	-				+0.4
3,325,407	-				+0.7
3,325,536	-		HER17_RS14780	0.41	-0.4
3,325,600	+		HER17_RS14780	0.59	-0.2
3,325,652	-		HER17_RS14780	0.73	+1.2
3,325,664	+		HER17_RS14780	0.77	-0.5