Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14345

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,223,184	-				+0.6
3,223,185	+				-1.6
3,223,192	+				-0.4
3,223,199	+				-0.2
3,223,250	-				-1.2
3,223,281	+				-1.2
3,223,282	-				+0.6
3,223,282	-				-0.4
3,223,295	+		HER17_RS14335	0.12	+0.5
3,223,334	+		HER17_RS14335	0.24	-0.0
3,223,416	+		HER17_RS14335	0.49	-0.0
3,223,417	-		HER17_RS14335	0.49	+0.3
3,223,417	-		HER17_RS14335	0.49	+0.9
3,223,532	+		HER17_RS14335	0.83	-0.3
3,223,532	+		HER17_RS14335	0.83	+0.2
3,223,532	+		HER17_RS14335	0.83	+1.1
3,223,538	-		HER17_RS14335	0.85	+0.2
3,223,542	-		HER17_RS14335	0.86	+0.9
3,223,595	+				+0.6
3,223,595	+				+0.6
3,223,690	+		HER17_RS14340	0.27	-0.3
3,223,718	+		HER17_RS14340	0.35	+0.5
3,223,727	+		HER17_RS14340	0.38	+0.7
3,223,795	-		HER17_RS14340	0.57	+0.5
3,223,974	-				-0.1
3,223,991	+				-0.3
3,223,991	+				+0.6
3,224,021	-				+1.4
3,224,028	-				-1.6
3,224,056	+				-0.1
3,224,057	-				+0.3
3,224,057	-				-0.8
3,224,058	+				+0.8
3,224,060	+				-1.1
3,224,061	-				+0.1
3,224,061	-				-0.0
3,224,061	-				-0.2
3,224,061	-				-0.1
3,224,061	-				-0.1
3,224,101	-				-0.3
3,224,104	+				-1.7
3,224,104	+				-0.5
3,224,105	-				-0.3
3,224,108	+				-1.2
3,224,108	+				-0.3
3,224,109	-				-0.2
3,224,127	-				+0.6
3,224,127	-				+0.4
3,224,127	-				-1.2
3,224,184	+				-0.4
3,224,192	+				+0.8
3,224,193	-				+0.0
3,224,193	-				+0.5
3,224,193	-				-0.5
3,224,196	+				-1.4
3,224,275	+		HER17_RS14345	0.14	-1.1
3,224,276	-		HER17_RS14345	0.14	-0.0
3,224,279	+		HER17_RS14345	0.14	+0.2
3,224,279	+		HER17_RS14345	0.14	-0.1
3,224,280	-		HER17_RS14345	0.15	+0.1
3,224,324	+		HER17_RS14345	0.19	-0.8
3,224,324	+		HER17_RS14345	0.19	-0.1
3,224,324	+		HER17_RS14345	0.19	-0.7
3,224,324	+		HER17_RS14345	0.19	+0.3
3,224,324	+		HER17_RS14345	0.19	+0.9
3,224,325	-		HER17_RS14345	0.19	+0.1
3,224,325	-		HER17_RS14345	0.19	-1.3
3,224,325	-		HER17_RS14345	0.19	+1.7
3,224,325	-		HER17_RS14345	0.19	+0.7
3,224,325	-		HER17_RS14345	0.19	-0.2
3,224,325	-		HER17_RS14345	0.19	+0.9
3,224,325	-		HER17_RS14345	0.19	-1.1
3,224,325	-		HER17_RS14345	0.19	-1.7
3,224,325	-		HER17_RS14345	0.19	-0.6
3,224,325	-		HER17_RS14345	0.19	-1.1
3,224,335	+		HER17_RS14345	0.20	-0.4
3,224,335	+		HER17_RS14345	0.20	-0.1
3,224,346	+		HER17_RS14345	0.21	-0.1
3,224,406	+		HER17_RS14345	0.26	-0.4
3,224,407	-		HER17_RS14345	0.26	+0.4
3,224,502	+		HER17_RS14345	0.35	-1.1
3,224,503	-		HER17_RS14345	0.35	+0.6
3,224,666	+		HER17_RS14345	0.51	-0.1
3,224,681	-		HER17_RS14345	0.52	+0.3
3,224,681	-		HER17_RS14345	0.52	-0.9
3,224,681	-		HER17_RS14345	0.52	+0.0
3,224,681	-		HER17_RS14345	0.52	-0.7
3,224,743	-		HER17_RS14345	0.58	-2.0
3,224,743	-		HER17_RS14345	0.58	+0.6
3,224,761	+		HER17_RS14345	0.60	-0.5
3,224,794	-		HER17_RS14345	0.63	-1.5
3,224,794	-		HER17_RS14345	0.63	-1.4
3,224,825	+		HER17_RS14345	0.66	+0.8
3,224,825	+		HER17_RS14345	0.66	-0.3
3,224,825	+		HER17_RS14345	0.66	-0.2
3,224,826	-		HER17_RS14345	0.66	+0.3
3,224,826	-		HER17_RS14345	0.66	-1.1
3,224,827	+		HER17_RS14345	0.66	-0.2
3,224,827	+		HER17_RS14345	0.66	+0.5
3,224,827	+		HER17_RS14345	0.66	+0.9
3,224,827	+		HER17_RS14345	0.66	-0.1
3,224,828	-		HER17_RS14345	0.66	+0.1
3,224,828	-		HER17_RS14345	0.66	+0.4
3,224,828	-		HER17_RS14345	0.66	+0.0
3,224,828	-		HER17_RS14345	0.66	-0.6
3,224,828	-		HER17_RS14345	0.66	-0.0
3,224,828	-		HER17_RS14345	0.66	-0.1
3,224,844	+		HER17_RS14345	0.68	-0.1
3,224,844	+		HER17_RS14345	0.68	+0.7
3,224,845	-		HER17_RS14345	0.68	-0.1
3,224,849	-		HER17_RS14345	0.68	-0.3
3,224,864	+		HER17_RS14345	0.69	-0.1
3,224,864	+		HER17_RS14345	0.69	-3.1
3,224,864	+		HER17_RS14345	0.69	+0.5
3,224,864	+		HER17_RS14345	0.69	+2.0
3,224,864	+		HER17_RS14345	0.69	+1.5
3,224,865	-		HER17_RS14345	0.69	-1.2
3,224,871	+		HER17_RS14345	0.70	+0.7
3,224,871	+		HER17_RS14345	0.70	+0.4
3,224,872	-		HER17_RS14345	0.70	+1.4
3,224,875	-		HER17_RS14345	0.70	-0.1
3,224,930	+		HER17_RS14345	0.76	+0.3
3,224,930	+		HER17_RS14345	0.76	+0.1
3,225,000	+		HER17_RS14345	0.82	+0.5
3,225,033	+		HER17_RS14345	0.85	+0.6
3,225,071	+		HER17_RS14345	0.89	-0.2
3,225,112	+				+1.3
3,225,112	+				-0.9
3,225,307	+				-0.8
3,225,370	-				+1.0
3,225,372	-				+0.0
3,225,379	+				-1.3
3,225,396	+				-0.7
3,225,434	-				-0.4
3,225,514	+				+0.0
3,225,515	-				+0.8
3,225,535	+				-1.1
3,225,535	+				-0.3
3,225,536	-				+0.2
3,225,536	-				+0.4
3,225,539	+				-0.4
3,225,630	+				-0.5
3,225,651	+				-0.0
3,225,652	-				-0.0
3,225,652	-				+0.8
3,225,652	-				+0.0
3,225,652	-				-0.8
3,225,652	-				-0.1
3,225,667	+				+0.3
3,225,667	+				-0.2
3,225,668	-				+0.1
3,225,668	-				-0.7
3,225,668	-				-0.4
3,225,668	-				-0.1
3,225,668	-				+0.6
3,225,727	-				-0.3
3,225,741	+				-1.6
3,225,741	+				+0.9
3,225,742	-				+0.7
3,225,763	+				-0.2
3,225,833	+		HER17_RS14350	0.11	+0.0
3,225,833	+		HER17_RS14350	0.11	+2.0
3,225,834	-		HER17_RS14350	0.11	-1.4
3,225,874	+		HER17_RS14350	0.13	-0.9
3,225,875	-		HER17_RS14350	0.13	+1.0
3,226,031	+		HER17_RS14350	0.21	+0.5
3,226,078	+		HER17_RS14350	0.24	+0.3
3,226,078	+		HER17_RS14350	0.24	+0.3
3,226,079	-		HER17_RS14350	0.24	+0.5
3,226,079	-		HER17_RS14350	0.24	+0.0
3,226,079	-		HER17_RS14350	0.24	-0.5
3,226,080	+		HER17_RS14350	0.24	-0.4
3,226,080	+		HER17_RS14350	0.24	+0.7
3,226,080	+		HER17_RS14350	0.24	+0.1
3,226,080	+		HER17_RS14350	0.24	+0.3
3,226,092	+		HER17_RS14350	0.25	+0.0
3,226,092	+		HER17_RS14350	0.25	+0.3
3,226,114	+		HER17_RS14350	0.26	-0.8
3,226,138	-		HER17_RS14350	0.27	+0.1
3,226,138	-		HER17_RS14350	0.27	-0.2
3,226,141	-		HER17_RS14350	0.27	+0.1
3,226,141	-		HER17_RS14350	0.27	-0.2