Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13355

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,959,460	+				-0.6
2,959,460	+				-0.5
2,959,460	+				+1.1
2,959,461	-				-0.0
2,959,461	-				+0.5
2,959,461	-				-0.6
2,959,461	-				-0.1
2,959,463	+				+0.4
2,959,463	+				-1.2
2,959,464	-				-1.0
2,959,464	-				+0.1
2,959,479	-		HER17_RS13350	0.11	-0.7
2,959,500	+		HER17_RS13350	0.14	-0.0
2,959,580	-		HER17_RS13350	0.22	+0.5
2,959,664	+		HER17_RS13350	0.31	+1.4
2,959,665	-		HER17_RS13350	0.31	+0.4
2,959,688	+		HER17_RS13350	0.33	-0.6
2,959,689	-		HER17_RS13350	0.33	-0.9
2,959,689	-		HER17_RS13350	0.33	-0.3
2,959,689	-		HER17_RS13350	0.33	+0.1
2,959,690	+		HER17_RS13350	0.34	+0.2
2,959,690	+		HER17_RS13350	0.34	+0.8
2,959,690	+		HER17_RS13350	0.34	+0.0
2,959,691	-		HER17_RS13350	0.34	+0.7
2,959,691	-		HER17_RS13350	0.34	-0.3
2,959,691	-		HER17_RS13350	0.34	-0.5
2,959,691	-		HER17_RS13350	0.34	-0.1
2,959,691	-		HER17_RS13350	0.34	+0.1
2,959,760	-		HER17_RS13350	0.41	+0.4
2,959,760	-		HER17_RS13350	0.41	+0.5
2,959,793	+		HER17_RS13350	0.44	-0.1
2,959,892	+		HER17_RS13350	0.55	+0.0
2,959,893	-		HER17_RS13350	0.55	-0.0
2,959,893	-		HER17_RS13350	0.55	+0.1
2,959,911	+		HER17_RS13350	0.57	-0.3
2,959,994	-		HER17_RS13350	0.66	-0.8
2,960,015	+		HER17_RS13350	0.68	+1.1
2,960,015	+		HER17_RS13350	0.68	+0.9
2,960,122	+		HER17_RS13350	0.79	+0.1
2,960,122	+		HER17_RS13350	0.79	-1.0
2,960,235	+				-0.6
2,960,235	+				-0.9
2,960,240	+				-0.3
2,960,241	-				+0.1
2,960,305	-				+0.1
2,960,465	+				+0.4
2,960,468	+				-0.2
2,960,469	-				-0.6
2,960,477	+				-0.7
2,960,478	-				+0.4
2,960,478	-				-0.2
2,960,523	-				+0.8
2,960,735	+		HER17_RS13355	0.17	+0.3
2,960,736	-		HER17_RS13355	0.17	+0.7
2,960,756	+		HER17_RS13355	0.18	-0.1
2,960,756	+		HER17_RS13355	0.18	-1.9
2,960,784	+		HER17_RS13355	0.19	+1.5
2,960,785	-		HER17_RS13355	0.19	-0.5
2,960,792	+		HER17_RS13355	0.20	-0.3
2,960,812	-		HER17_RS13355	0.21	-1.0
2,960,850	+		HER17_RS13355	0.22	+0.6
2,960,900	+		HER17_RS13355	0.25	-0.5
2,960,900	+		HER17_RS13355	0.25	+0.0
2,960,951	-		HER17_RS13355	0.27	+0.2
2,960,979	+		HER17_RS13355	0.28	-0.0
2,960,983	-		HER17_RS13355	0.29	-1.3
2,960,988	+		HER17_RS13355	0.29	-0.1
2,960,992	-		HER17_RS13355	0.29	+0.7
2,961,063	-		HER17_RS13355	0.32	-1.5
2,961,073	+		HER17_RS13355	0.33	+0.5
2,961,074	-		HER17_RS13355	0.33	+0.7
2,961,116	+		HER17_RS13355	0.35	+0.1
2,961,116	+		HER17_RS13355	0.35	+1.7
2,961,117	-		HER17_RS13355	0.35	-0.5
2,961,117	-		HER17_RS13355	0.35	+0.0
2,961,117	-		HER17_RS13355	0.35	+0.5
2,961,157	+		HER17_RS13355	0.37	+0.4
2,961,199	-		HER17_RS13355	0.39	-1.6
2,961,221	-		HER17_RS13355	0.40	+0.7
2,961,232	+		HER17_RS13355	0.40	-1.7
2,961,232	+		HER17_RS13355	0.40	-0.7
2,961,233	-		HER17_RS13355	0.41	-0.9
2,961,233	-		HER17_RS13355	0.41	-0.7
2,961,238	+		HER17_RS13355	0.41	+0.7
2,961,238	+		HER17_RS13355	0.41	-1.5
2,961,238	+		HER17_RS13355	0.41	+1.0
2,961,239	-		HER17_RS13355	0.41	-0.3
2,961,257	+		HER17_RS13355	0.42	+0.5
2,961,258	-		HER17_RS13355	0.42	-0.3
2,961,281	+		HER17_RS13355	0.43	+0.5
2,961,281	+		HER17_RS13355	0.43	-0.5
2,961,281	+		HER17_RS13355	0.43	+0.1
2,961,282	-		HER17_RS13355	0.43	+1.9
2,961,282	-		HER17_RS13355	0.43	+0.3
2,961,282	-		HER17_RS13355	0.43	+0.3
2,961,282	-		HER17_RS13355	0.43	-0.5
2,961,290	+		HER17_RS13355	0.43	+0.6
2,961,291	-		HER17_RS13355	0.43	-0.3
2,961,291	-		HER17_RS13355	0.43	+0.1
2,961,291	-		HER17_RS13355	0.43	-0.2
2,961,308	+		HER17_RS13355	0.44	-1.2
2,961,308	+		HER17_RS13355	0.44	-0.3
2,961,308	+		HER17_RS13355	0.44	-0.0
2,961,308	+		HER17_RS13355	0.44	+0.0
2,961,308	+		HER17_RS13355	0.44	-0.2
2,961,308	+		HER17_RS13355	0.44	+0.3
2,961,308	+		HER17_RS13355	0.44	+0.1
2,961,308	+		HER17_RS13355	0.44	-2.0
2,961,308	+		HER17_RS13355	0.44	+0.1
2,961,309	-		HER17_RS13355	0.44	-1.0
2,961,312	+		HER17_RS13355	0.44	+0.1
2,961,312	+		HER17_RS13355	0.44	+0.5
2,961,312	+		HER17_RS13355	0.44	+1.1
2,961,312	+		HER17_RS13355	0.44	+1.0
2,961,326	+		HER17_RS13355	0.45	+0.1
2,961,327	-		HER17_RS13355	0.45	-0.0
2,961,350	+		HER17_RS13355	0.46	+0.4
2,961,379	+		HER17_RS13355	0.47	+0.5
2,961,379	+		HER17_RS13355	0.47	-0.1
2,961,380	-		HER17_RS13355	0.47	+0.9
2,961,395	-		HER17_RS13355	0.48	+1.1
2,961,395	-		HER17_RS13355	0.48	-1.5
2,961,429	-		HER17_RS13355	0.50	+0.5
2,961,433	-		HER17_RS13355	0.50	+1.2
2,961,459	-		HER17_RS13355	0.51	-1.2
2,961,520	+		HER17_RS13355	0.54	-2.3
2,961,587	+		HER17_RS13355	0.57	+1.1
2,961,587	+		HER17_RS13355	0.57	-0.1
2,961,588	-		HER17_RS13355	0.57	+0.3
2,961,609	+		HER17_RS13355	0.58	-0.2
2,961,609	+		HER17_RS13355	0.58	-0.7
2,961,609	+		HER17_RS13355	0.58	-1.0
2,961,609	+		HER17_RS13355	0.58	-1.0
2,961,616	-		HER17_RS13355	0.59	-0.6
2,961,679	-		HER17_RS13355	0.62	+0.9
2,961,679	-		HER17_RS13355	0.62	-1.1
2,961,685	+		HER17_RS13355	0.62	+0.5
2,961,685	+		HER17_RS13355	0.62	+0.1
2,961,686	-		HER17_RS13355	0.62	+1.1
2,961,686	-		HER17_RS13355	0.62	-0.1
2,961,686	-		HER17_RS13355	0.62	-0.5
2,961,695	+		HER17_RS13355	0.62	-0.9
2,961,696	-		HER17_RS13355	0.62	+0.8
2,961,696	-		HER17_RS13355	0.62	+0.4
2,961,699	+		HER17_RS13355	0.63	-0.2
2,961,699	+		HER17_RS13355	0.63	+0.1
2,961,699	+		HER17_RS13355	0.63	-0.4
2,961,700	-		HER17_RS13355	0.63	+0.4
2,961,749	+		HER17_RS13355	0.65	+0.4
2,961,764	+		HER17_RS13355	0.66	+1.6
2,961,808	-		HER17_RS13355	0.68	-0.9
2,961,857	+		HER17_RS13355	0.70	-1.2
2,961,857	+		HER17_RS13355	0.70	-1.0
2,961,857	+		HER17_RS13355	0.70	-0.5
2,961,858	-		HER17_RS13355	0.70	-0.5
2,961,893	+		HER17_RS13355	0.72	-0.1
2,961,894	-		HER17_RS13355	0.72	+0.0
2,961,926	+		HER17_RS13355	0.73	+1.9
2,961,936	+		HER17_RS13355	0.74	+0.1
2,961,937	-		HER17_RS13355	0.74	-0.2
2,961,937	-		HER17_RS13355	0.74	-0.7
2,961,937	-		HER17_RS13355	0.74	-1.7
2,961,937	-		HER17_RS13355	0.74	+0.3
2,961,938	+		HER17_RS13355	0.74	+0.4
2,961,938	+		HER17_RS13355	0.74	+0.7
2,961,938	+		HER17_RS13355	0.74	-1.9
2,961,985	+		HER17_RS13355	0.76	-0.6
2,962,035	+		HER17_RS13355	0.79	+0.0
2,962,035	+		HER17_RS13355	0.79	+0.0
2,962,038	+		HER17_RS13355	0.79	+0.5
2,962,038	+		HER17_RS13355	0.79	-0.6
2,962,039	-		HER17_RS13355	0.79	-0.6
2,962,039	-		HER17_RS13355	0.79	+0.0
2,962,039	-		HER17_RS13355	0.79	-0.3
2,962,098	+		HER17_RS13355	0.82	-1.0
2,962,121	-		HER17_RS13355	0.83	-0.8
2,962,437	-				+0.5
2,962,479	+				+1.1
2,962,479	+				+1.5
2,962,479	+				-1.1
2,962,512	+				-0.9
2,962,512	+				+0.5
2,962,513	-				-1.3
2,962,513	-				-0.6
2,962,513	-				-0.5
2,962,513	-				+0.3
2,962,516	+				-0.3
2,962,516	+				-2.8
2,962,517	-				-0.6
2,962,517	-				-0.5
2,962,517	-				+0.2
2,962,558	+				-0.6
2,962,558	+				+0.6
2,962,558	+				+0.3
2,962,559	-				+1.5
2,962,559	-				-0.5
2,962,559	-				+0.4
2,962,674	+				-1.3
2,962,674	+				-1.4
2,962,677	-				+1.8
2,962,677	-				+0.5
2,962,703	+				-0.3
2,962,704	-				-0.0
2,962,704	-				-0.1
2,962,704	-				-0.6
2,962,704	-				+1.0
2,962,704	-				-1.2
2,962,724	+				+0.4
2,962,731	+				-0.1
2,962,734	+				-0.4
2,962,742	-				-0.4
2,962,742	-				+0.2
2,962,821	-				-0.7
2,962,855	+				+0.1
2,962,914	-				+1.5
2,962,919	+				-0.5
2,962,919	+				+0.8
2,962,919	+				+0.1
2,962,919	+				-0.3
2,962,935	+				-1.2
2,963,010	+				+0.3
2,963,010	+				-0.4
2,963,011	-				+0.2
2,963,011	-				+0.2
2,963,011	-				-1.2
2,963,011	-				+0.3
2,963,031	+				+1.2
2,963,031	+				+0.2
2,963,031	+				+0.4
2,963,105	+				-0.3
2,963,105	+				-0.7
2,963,273	+		HER17_RS13360	0.23	+0.1
2,963,388	+		HER17_RS13360	0.34	+0.1
2,963,388	+		HER17_RS13360	0.34	+0.1
2,963,427	-		HER17_RS13360	0.38	+0.1
2,963,427	-		HER17_RS13360	0.38	+0.1