Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS10290

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,292,661	+		HER17_RS10280	0.63	-0.8
2,292,661	+		HER17_RS10280	0.63	-0.2
2,292,662	-		HER17_RS10280	0.63	+0.6
2,292,710	-		HER17_RS10280	0.67	-0.5
2,292,710	-		HER17_RS10280	0.67	+0.1
2,292,713	+		HER17_RS10280	0.67	+0.0
2,292,713	+		HER17_RS10280	0.67	+0.8
2,292,713	+		HER17_RS10280	0.67	-0.0
2,292,714	-		HER17_RS10280	0.67	-0.6
2,292,714	-		HER17_RS10280	0.67	+0.4
2,292,714	-		HER17_RS10280	0.67	-1.9
2,292,714	-		HER17_RS10280	0.67	-1.1
2,292,714	-		HER17_RS10280	0.67	-0.7
2,292,725	+		HER17_RS10280	0.68	+0.1
2,292,755	+		HER17_RS10280	0.70	-0.0
2,292,756	-		HER17_RS10280	0.70	+0.1
2,292,756	-		HER17_RS10280	0.70	+1.5
2,292,756	-		HER17_RS10280	0.70	+0.0
2,292,856	+		HER17_RS10280	0.78	-1.4
2,292,856	+		HER17_RS10280	0.78	-0.9
2,292,856	+		HER17_RS10280	0.78	-0.7
2,292,899	-		HER17_RS10280	0.81	-0.4
2,292,932	+		HER17_RS10280	0.84	+0.4
2,292,932	+		HER17_RS10280	0.84	+0.0
2,293,027	+				+0.2
2,293,046	+				+0.2
2,293,049	+				+0.5
2,293,050	-				-1.7
2,293,086	+				+0.7
2,293,087	-				+0.1
2,293,113	+				+0.5
2,293,141	+				-1.6
2,293,142	-				+0.7
2,293,142	-				-0.7
2,293,147	+				+2.5
2,293,147	+				+0.6
2,293,157	-				-0.4
2,293,159	+				+0.6
2,293,159	+				-0.3
2,293,159	+				+1.2
2,293,160	-				-0.5
2,293,166	+				+1.0
2,293,166	+				+0.9
2,293,167	-				-1.8
2,293,167	-				-0.1
2,293,196	-		HER17_RS10285	0.11	+0.6
2,293,199	-		HER17_RS10285	0.12	+0.3
2,293,217	-		HER17_RS10285	0.16	+0.3
2,293,240	+		HER17_RS10285	0.22	+0.1
2,293,244	+		HER17_RS10285	0.23	+0.9
2,293,244	+		HER17_RS10285	0.23	-0.7
2,293,245	-		HER17_RS10285	0.23	+0.9
2,293,245	-		HER17_RS10285	0.23	-0.8
2,293,245	-		HER17_RS10285	0.23	-1.8
2,293,248	-		HER17_RS10285	0.23	-0.5
2,293,248	-		HER17_RS10285	0.23	-0.1
2,293,327	+		HER17_RS10285	0.42	+1.6
2,293,343	+		HER17_RS10285	0.46	-1.5
2,293,345	+		HER17_RS10285	0.46	+0.1
2,293,345	+		HER17_RS10285	0.46	+0.9
2,293,345	+		HER17_RS10285	0.46	-0.0
2,293,345	+		HER17_RS10285	0.46	+1.1
2,293,345	+		HER17_RS10285	0.46	-0.5
2,293,345	+		HER17_RS10285	0.46	-0.2
2,293,345	+		HER17_RS10285	0.46	-0.7
2,293,346	-		HER17_RS10285	0.46	-0.1
2,293,346	-		HER17_RS10285	0.46	-0.4
2,293,346	-		HER17_RS10285	0.46	+0.1
2,293,375	+		HER17_RS10285	0.53	-1.2
2,293,414	+		HER17_RS10285	0.62	+0.9
2,293,572	-				-0.7
2,293,584	+				+0.3
2,293,584	+				+0.0
2,293,584	+				-0.3
2,293,585	-				+1.5
2,293,615	-				+0.7
2,293,615	-				+0.7
2,293,647	+				-0.7
2,293,647	+				-0.7
2,293,648	-				+0.4
2,293,648	-				-0.4
2,293,669	+				-0.9
2,293,669	+				+0.2
2,293,751	+		HER17_RS10290	0.11	+0.2
2,293,751	+		HER17_RS10290	0.11	-0.4
2,293,751	+		HER17_RS10290	0.11	-0.8
2,293,751	+		HER17_RS10290	0.11	+0.6
2,293,751	+		HER17_RS10290	0.11	-0.7
2,293,751	+		HER17_RS10290	0.11	+0.1
2,293,752	-		HER17_RS10290	0.11	+0.3
2,293,752	-		HER17_RS10290	0.11	-0.7
2,293,752	-		HER17_RS10290	0.11	+0.4
2,293,760	+		HER17_RS10290	0.12	-1.3
2,293,821	-		HER17_RS10290	0.20	-0.4
2,294,058	+		HER17_RS10290	0.48	-0.4
2,294,059	-		HER17_RS10290	0.49	-0.5
2,294,065	+		HER17_RS10290	0.49	+0.5
2,294,135	+		HER17_RS10290	0.58	+0.1
2,294,135	+		HER17_RS10290	0.58	+0.0
2,294,136	-		HER17_RS10290	0.58	+0.9
2,294,162	+		HER17_RS10290	0.61	+1.1
2,294,162	+		HER17_RS10290	0.61	-0.4
2,294,188	-		HER17_RS10290	0.64	-0.8
2,294,188	-		HER17_RS10290	0.64	-1.3
2,294,194	+		HER17_RS10290	0.65	+0.9
2,294,195	-		HER17_RS10290	0.65	+0.6
2,294,195	-		HER17_RS10290	0.65	-0.5
2,294,195	-		HER17_RS10290	0.65	+0.5
2,294,220	+		HER17_RS10290	0.68	-0.6
2,294,221	-		HER17_RS10290	0.68	-0.9
2,294,282	+		HER17_RS10290	0.76	-0.1
2,294,283	-		HER17_RS10290	0.76	-0.1
2,294,319	-		HER17_RS10290	0.80	-0.7
2,294,390	+		HER17_RS10290	0.89	+1.6
2,294,390	+		HER17_RS10290	0.89	+0.3
2,294,470	+				-0.7
2,294,471	-				-0.5
2,294,592	+				-0.7
2,294,592	+				-0.0
2,294,593	-				-1.3
2,294,593	-				-0.4
2,294,593	-				+0.9
2,294,593	-				+0.2
2,294,593	-				-0.1
2,294,604	+		HER17_RS10295	0.10	+0.2
2,294,604	+		HER17_RS10295	0.10	-0.8
2,294,604	+		HER17_RS10295	0.10	+0.6
2,294,607	+		HER17_RS10295	0.11	-1.8
2,294,621	+		HER17_RS10295	0.12	-0.6
2,294,643	+		HER17_RS10295	0.14	-0.3
2,294,695	-		HER17_RS10295	0.20	+0.1
2,294,712	+		HER17_RS10295	0.22	-0.1
2,294,739	+		HER17_RS10295	0.25	+0.8
2,294,740	-		HER17_RS10295	0.25	+0.2
2,294,752	+		HER17_RS10295	0.26	-0.4
2,294,753	-		HER17_RS10295	0.26	-0.4
2,294,911	+		HER17_RS10295	0.43	-0.4
2,294,923	+		HER17_RS10295	0.44	+0.2
2,294,954	+		HER17_RS10295	0.47	-0.0
2,294,954	+		HER17_RS10295	0.47	+1.5
2,295,046	-		HER17_RS10295	0.57	-0.7
2,295,052	-		HER17_RS10295	0.58	+0.5
2,295,112	+		HER17_RS10295	0.64	-0.7
2,295,113	-		HER17_RS10295	0.64	+0.6
2,295,114	+		HER17_RS10295	0.64	+1.3
2,295,114	+		HER17_RS10295	0.64	-0.3
2,295,115	-		HER17_RS10295	0.64	-0.0
2,295,115	-		HER17_RS10295	0.64	+0.3
2,295,115	-		HER17_RS10295	0.64	-1.1
2,295,141	+		HER17_RS10295	0.67	+0.5
2,295,141	+		HER17_RS10295	0.67	+0.9
2,295,329	-		HER17_RS10295	0.87	+1.7
2,295,329	-		HER17_RS10295	0.87	+0.2
2,295,437	+				-0.6