Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08680

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS08670 and HER17_RS08675 overlap by 11 nucleotidesHER17_RS08675 and HER17_RS08680 overlap by 1 nucleotidesHER17_RS08680 and HER17_RS08685 are separated by 19 nucleotides HER17_RS08670: HER17_RS08670 - endolytic transglycosylase MltG, at 1,903,590 to 1,904,609 _RS08670 HER17_RS08675: HER17_RS08675 - dTMP kinase, at 1,904,599 to 1,905,258 _RS08675 HER17_RS08680: HER17_RS08680 - DNA polymerase III subunit delta', at 1,905,258 to 1,906,268 _RS08680 HER17_RS08685: HER17_RS08685 - metal-dependent hydrolase, at 1,906,288 to 1,907,085 _RS08685 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -3 -2 -1 0 1at 1904.334 kb on + strand, within HER17_RS08670at 1904.380 kb on + strand, within HER17_RS08670at 1904.402 kb on + strand, within HER17_RS08670at 1904.402 kb on + strand, within HER17_RS08670at 1904.402 kb on + strand, within HER17_RS08670at 1904.402 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.406 kb on + strand, within HER17_RS08670at 1904.422 kb on + strand, within HER17_RS08670at 1904.540 kb on + strandat 1906.266 kb on + strandat 1906.270 kb on + strandat 1906.270 kb on + strandat 1906.270 kb on + strandat 1906.271 kb on - strandat 1906.280 kb on + strandat 1906.284 kb on + strandat 1906.285 kb on - strandat 1906.344 kb on + strandat 1906.345 kb on - strandat 1906.345 kb on - strandat 1906.495 kb on - strand, within HER17_RS08685at 1906.510 kb on + strand, within HER17_RS08685at 1906.588 kb on + strand, within HER17_RS08685at 1906.589 kb on - strand, within HER17_RS08685at 1906.642 kb on - strand, within HER17_RS08685at 1906.677 kb on + strand, within HER17_RS08685at 1906.678 kb on - strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.806 kb on + strand, within HER17_RS08685at 1906.807 kb on - strand, within HER17_RS08685at 1906.954 kb on + strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.959 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1907.084 kb on - strandat 1907.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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1,904,334 + HER17_RS08670 0.73 -0.8
1,904,380 + HER17_RS08670 0.77 +0.2
1,904,402 + HER17_RS08670 0.80 +0.3
1,904,402 + HER17_RS08670 0.80 -0.6
1,904,402 + HER17_RS08670 0.80 +0.3
1,904,402 + HER17_RS08670 0.80 +0.4
1,904,406 + HER17_RS08670 0.80 -2.6
1,904,406 + HER17_RS08670 0.80 -0.6
1,904,406 + HER17_RS08670 0.80 -1.0
1,904,406 + HER17_RS08670 0.80 +0.0
1,904,406 + HER17_RS08670 0.80 -2.9
1,904,406 + HER17_RS08670 0.80 -0.7
1,904,406 + HER17_RS08670 0.80 +0.0
1,904,422 + HER17_RS08670 0.82 -1.6
1,904,540 + -0.3
1,906,266 + +0.0
1,906,270 + +1.0
1,906,270 + +1.0
1,906,270 + -0.6
1,906,271 - -1.7
1,906,280 + -1.3
1,906,284 + -0.9
1,906,285 - +0.6
1,906,344 + +0.1
1,906,345 - +0.3
1,906,345 - -0.2
1,906,495 - HER17_RS08685 0.26 +1.0
1,906,510 + HER17_RS08685 0.28 +0.3
1,906,588 + HER17_RS08685 0.38 +0.0
1,906,589 - HER17_RS08685 0.38 -0.4
1,906,642 - HER17_RS08685 0.44 -0.3
1,906,677 + HER17_RS08685 0.49 +0.8
1,906,678 - HER17_RS08685 0.49 +1.3
1,906,698 + HER17_RS08685 0.51 -1.8
1,906,698 + HER17_RS08685 0.51 +1.4
1,906,698 + HER17_RS08685 0.51 +0.1
1,906,804 + HER17_RS08685 0.65 +0.1
1,906,804 + HER17_RS08685 0.65 +0.9
1,906,804 + HER17_RS08685 0.65 +0.6
1,906,804 + HER17_RS08685 0.65 -0.1
1,906,804 + HER17_RS08685 0.65 -0.3
1,906,804 + HER17_RS08685 0.65 -0.4
1,906,804 + HER17_RS08685 0.65 -2.5
1,906,805 - HER17_RS08685 0.65 -0.2
1,906,805 - HER17_RS08685 0.65 +0.4
1,906,805 - HER17_RS08685 0.65 -0.6
1,906,805 - HER17_RS08685 0.65 -0.6
1,906,805 - HER17_RS08685 0.65 +0.4
1,906,806 + HER17_RS08685 0.65 -2.6
1,906,807 - HER17_RS08685 0.65 -0.1
1,906,954 + HER17_RS08685 0.83 -0.2
1,906,955 - HER17_RS08685 0.84 -0.1
1,906,955 - HER17_RS08685 0.84 -1.6
1,906,955 - HER17_RS08685 0.84 -0.3
1,906,955 - HER17_RS08685 0.84 +0.5
1,906,959 - HER17_RS08685 0.84 -0.3
1,906,976 - HER17_RS08685 0.86 -0.4
1,906,976 - HER17_RS08685 0.86 +0.0
1,906,976 - HER17_RS08685 0.86 -0.2
1,907,084 - +0.3
1,907,120 - -0.4

Or see this region's nucleotide sequence