Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06250

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,383,308	+				-0.1
1,383,309	-				-0.3
1,383,312	+				-0.5
1,383,313	-				-0.4
1,383,333	+				-0.6
1,383,334	-				-0.1
1,383,346	+				+0.4
1,383,346	+				+0.1
1,383,346	+				+0.2
1,383,346	+				-0.7
1,383,347	-				-0.8
1,383,347	-				-0.0
1,383,347	-				+0.1
1,383,370	+				+0.4
1,383,371	-				-0.6
1,383,457	+		HER17_RS06245	0.20	-0.2
1,383,457	+		HER17_RS06245	0.20	+0.3
1,383,458	-		HER17_RS06245	0.20	+0.4
1,383,458	-		HER17_RS06245	0.20	+0.4
1,383,503	-		HER17_RS06245	0.26	+0.7
1,383,524	+		HER17_RS06245	0.28	-0.9
1,383,524	+		HER17_RS06245	0.28	+0.1
1,383,524	+		HER17_RS06245	0.28	-0.1
1,383,524	+		HER17_RS06245	0.28	-0.1
1,383,524	+		HER17_RS06245	0.28	+0.0
1,383,525	-		HER17_RS06245	0.28	+0.3
1,383,525	-		HER17_RS06245	0.28	+0.7
1,383,649	+		HER17_RS06245	0.43	+0.3
1,383,725	-		HER17_RS06245	0.53	-0.2
1,383,725	-		HER17_RS06245	0.53	-1.1
1,383,725	-		HER17_RS06245	0.53	-0.0
1,383,735	+		HER17_RS06245	0.54	+0.4
1,383,736	-		HER17_RS06245	0.54	+2.2
1,383,736	-		HER17_RS06245	0.54	+0.6
1,383,742	+		HER17_RS06245	0.55	-0.7
1,383,742	+		HER17_RS06245	0.55	+1.1
1,383,745	+		HER17_RS06245	0.55	+0.3
1,383,746	-		HER17_RS06245	0.55	-2.0
1,383,805	+		HER17_RS06245	0.63	-1.4
1,383,805	+		HER17_RS06245	0.63	+0.4
1,383,806	-		HER17_RS06245	0.63	-0.7
1,383,806	-		HER17_RS06245	0.63	-0.3
1,383,806	-		HER17_RS06245	0.63	+0.1
1,383,817	+		HER17_RS06245	0.64	-0.1
1,383,818	-		HER17_RS06245	0.64	-1.0
1,383,818	-		HER17_RS06245	0.64	-0.6
1,383,818	-		HER17_RS06245	0.64	-0.3
1,383,896	+		HER17_RS06245	0.74	-0.3
1,383,896	+		HER17_RS06245	0.74	+1.1
1,383,896	+		HER17_RS06245	0.74	+0.6
1,383,896	+		HER17_RS06245	0.74	-0.1
1,383,899	-		HER17_RS06245	0.74	-0.4
1,383,899	-		HER17_RS06245	0.74	-1.2
1,383,926	+		HER17_RS06245	0.77	-0.3
1,383,952	+		HER17_RS06245	0.80	+0.1
1,383,977	+		HER17_RS06245	0.84	+0.8
1,383,987	+		HER17_RS06245	0.85	-0.6
1,384,063	+				-0.2
1,384,063	+				-0.6
1,384,106	-				-0.4
1,384,109	+				-0.1
1,384,109	+				+0.9
1,384,110	-				+0.3
1,384,114	+				+1.1
1,384,114	+				-0.2
1,384,115	-				-1.0
1,384,115	-				-0.4
1,384,116	+				+0.7
1,384,145	+				-0.2
1,384,146	-				+1.0
1,384,156	-				-0.5
1,384,158	-				-0.4
1,384,175	+				+0.4
1,384,198	-		HER17_RS21920	0.26	+0.6
1,384,290	-				-0.2
1,384,304	-				+0.7
1,384,349	+				+1.4
1,384,350	-				+0.1
1,384,350	-				-1.7
1,384,350	-				-0.1
1,384,460	+		HER17_RS06250	0.17	+1.1
1,384,461	-		HER17_RS06250	0.17	-0.3
1,384,495	-		HER17_RS06250	0.21	+0.2
1,384,495	-		HER17_RS06250	0.21	+0.5
1,384,590	-		HER17_RS06250	0.31	+0.8
1,384,590	-		HER17_RS06250	0.31	-0.1
1,384,590	-		HER17_RS06250	0.31	-0.4
1,384,654	+		HER17_RS06250	0.38	-0.1
1,384,655	-		HER17_RS06250	0.38	+1.0
1,384,680	-		HER17_RS06250	0.41	+0.6
1,384,694	+		HER17_RS06250	0.42	-0.0
1,384,698	+		HER17_RS06250	0.43	-0.8
1,384,698	+		HER17_RS06250	0.43	-0.7
1,384,699	-		HER17_RS06250	0.43	-0.2
1,384,778	+		HER17_RS06250	0.52	+0.4
1,384,778	+		HER17_RS06250	0.52	-0.6
1,384,788	+		HER17_RS06250	0.53	-0.1
1,384,788	+		HER17_RS06250	0.53	+0.7
1,384,788	+		HER17_RS06250	0.53	-0.3
1,384,808	+		HER17_RS06250	0.55	+1.4
1,384,809	-		HER17_RS06250	0.55	-0.5
1,384,809	-		HER17_RS06250	0.55	-0.1
1,384,809	-		HER17_RS06250	0.55	-1.3
1,384,809	-		HER17_RS06250	0.55	-0.4
1,384,825	-		HER17_RS06250	0.57	+0.7
1,384,834	+		HER17_RS06250	0.58	-0.4
1,384,835	-		HER17_RS06250	0.58	-0.2
1,384,866	-		HER17_RS06250	0.61	+0.7
1,384,876	-		HER17_RS06250	0.62	+1.2
1,384,888	+		HER17_RS06250	0.63	+0.5
1,384,888	+		HER17_RS06250	0.63	-0.0
1,384,888	+		HER17_RS06250	0.63	+0.3
1,384,889	-		HER17_RS06250	0.64	+0.8
1,384,889	-		HER17_RS06250	0.64	-2.0
1,384,956	+		HER17_RS06250	0.71	-0.6
1,384,956	+		HER17_RS06250	0.71	+0.8
1,384,957	-		HER17_RS06250	0.71	+0.2
1,384,991	+		HER17_RS06250	0.75	+0.2
1,384,992	-		HER17_RS06250	0.75	-0.5
1,384,998	-		HER17_RS06250	0.75	-0.4
1,385,027	+		HER17_RS06250	0.78	+1.4
1,385,063	-		HER17_RS06250	0.82	-0.9
1,385,063	-		HER17_RS06250	0.82	-0.1
1,385,123	+		HER17_RS06250	0.89	-0.4
1,385,127	+		HER17_RS06250	0.89	-1.4
1,385,128	-		HER17_RS06250	0.89	-1.4
1,385,130	-		HER17_RS06250	0.90	+1.2
1,385,130	-		HER17_RS06250	0.90	-0.3
1,385,151	+				-0.0
1,385,243	-				+0.9
1,385,252	+				-1.1
1,385,259	-				+1.1
1,385,268	+				+0.4
1,385,277	+				+0.2
1,385,277	+				-0.3
1,385,278	-				+0.4
1,385,289	+				+0.0
1,385,290	-				+0.0
1,385,290	-				-0.6
1,385,290	-				+0.4
1,385,290	-				+0.8
1,385,306	+				+0.1
1,385,307	-				-1.0
1,385,322	-				-0.5
1,385,322	-				+0.7
1,385,322	-				-0.5
1,385,324	-				+0.4
1,385,397	+				+0.9
1,385,427	+				+0.4
1,385,427	+				+0.4
1,385,427	+				-1.2
1,385,428	-				+0.2
1,385,428	-				+0.2
1,385,541	-		HER17_RS06255	0.16	-0.6
1,385,622	-		HER17_RS06255	0.24	-0.1
1,385,639	-		HER17_RS06255	0.25	-0.3
1,385,639	-		HER17_RS06255	0.25	-0.2
1,385,657	-		HER17_RS06255	0.27	-1.6
1,386,184	-		HER17_RS06255	0.79	-0.4
1,386,193	-		HER17_RS06255	0.80	+0.1