Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04375

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04370 and HER17_RS04375 are separated by 65 nucleotidesHER17_RS04375 and HER17_RS04380 overlap by 8 nucleotides HER17_RS04370: HER17_RS04370 - MetQ/NlpA family lipoprotein, at 995,688 to 996,503 _RS04370 HER17_RS04375: HER17_RS04375 - methionine ABC transporter permease MetI, at 996,569 to 997,222 _RS04375 HER17_RS04380: HER17_RS04380 - methionine ABC transporter ATP-binding protein MetN, at 997,215 to 998,246 _RS04380 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3at 995.593 kb on - strandat 995.593 kb on - strandat 995.821 kb on - strand, within HER17_RS04370at 995.821 kb on - strand, within HER17_RS04370at 995.825 kb on - strand, within HER17_RS04370at 995.890 kb on + strand, within HER17_RS04370at 995.890 kb on + strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.891 kb on - strand, within HER17_RS04370at 995.931 kb on + strand, within HER17_RS04370at 995.931 kb on + strand, within HER17_RS04370at 995.931 kb on + strand, within HER17_RS04370at 996.180 kb on - strand, within HER17_RS04370at 996.180 kb on - strand, within HER17_RS04370at 996.180 kb on - strand, within HER17_RS04370at 996.187 kb on - strand, within HER17_RS04370at 996.232 kb on + strand, within HER17_RS04370at 996.232 kb on + strand, within HER17_RS04370at 996.298 kb on + strand, within HER17_RS04370at 996.306 kb on - strand, within HER17_RS04370at 996.315 kb on + strand, within HER17_RS04370at 996.316 kb on - strand, within HER17_RS04370at 996.334 kb on + strand, within HER17_RS04370at 996.335 kb on - strand, within HER17_RS04370at 996.405 kb on - strand, within HER17_RS04370at 996.407 kb on + strand, within HER17_RS04370at 996.407 kb on + strand, within HER17_RS04370at 996.407 kb on + strand, within HER17_RS04370at 996.413 kb on + strand, within HER17_RS04370at 996.483 kb on - strandat 996.495 kb on - strandat 996.515 kb on + strandat 996.516 kb on - strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.556 kb on + strandat 996.570 kb on + strandat 996.570 kb on + strandat 996.590 kb on + strandat 996.590 kb on + strandat 996.638 kb on + strand, within HER17_RS04375at 996.641 kb on + strand, within HER17_RS04375at 996.642 kb on - strand, within HER17_RS04375at 996.642 kb on - strand, within HER17_RS04375at 996.642 kb on - strand, within HER17_RS04375at 996.642 kb on - strand, within HER17_RS04375at 996.642 kb on - strand, within HER17_RS04375at 996.644 kb on + strand, within HER17_RS04375at 996.644 kb on + strand, within HER17_RS04375at 996.645 kb on - strand, within HER17_RS04375at 996.645 kb on - strand, within HER17_RS04375at 996.648 kb on - strand, within HER17_RS04375at 996.652 kb on + strand, within HER17_RS04375at 996.671 kb on - strand, within HER17_RS04375at 996.673 kb on - strand, within HER17_RS04375at 996.673 kb on - strand, within HER17_RS04375at 996.679 kb on + strand, within HER17_RS04375at 996.679 kb on + strand, within HER17_RS04375at 996.680 kb on - strand, within HER17_RS04375at 996.681 kb on + strand, within HER17_RS04375at 996.681 kb on + strand, within HER17_RS04375at 996.681 kb on + strand, within HER17_RS04375at 996.682 kb on - strand, within HER17_RS04375at 996.682 kb on - strand, within HER17_RS04375at 996.682 kb on - strand, within HER17_RS04375at 996.682 kb on - strand, within HER17_RS04375at 996.684 kb on - strand, within HER17_RS04375at 996.687 kb on + strand, within HER17_RS04375at 996.688 kb on - strand, within HER17_RS04375at 996.688 kb on - strand, within HER17_RS04375at 996.708 kb on - strand, within HER17_RS04375at 996.708 kb on - strand, within HER17_RS04375at 996.744 kb on + strand, within HER17_RS04375at 996.745 kb on - strand, within HER17_RS04375at 996.749 kb on + strand, within HER17_RS04375at 996.750 kb on - strand, within HER17_RS04375at 996.750 kb on - strand, within HER17_RS04375at 996.758 kb on - strand, within HER17_RS04375at 996.762 kb on - strand, within HER17_RS04375at 996.762 kb on - strand, within HER17_RS04375at 996.781 kb on + strand, within HER17_RS04375at 996.782 kb on - strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.929 kb on + strand, within HER17_RS04375at 996.930 kb on - strand, within HER17_RS04375at 996.930 kb on - strand, within HER17_RS04375at 996.930 kb on - strand, within HER17_RS04375at 996.930 kb on - strand, within HER17_RS04375at 996.934 kb on + strand, within HER17_RS04375at 996.935 kb on - strand, within HER17_RS04375at 996.935 kb on - strand, within HER17_RS04375at 996.935 kb on - strand, within HER17_RS04375at 997.016 kb on - strand, within HER17_RS04375at 997.016 kb on - strand, within HER17_RS04375at 997.039 kb on + strand, within HER17_RS04375at 997.039 kb on + strand, within HER17_RS04375at 997.040 kb on - strand, within HER17_RS04375at 997.044 kb on - strand, within HER17_RS04375at 997.066 kb on - strand, within HER17_RS04375at 997.106 kb on - strand, within HER17_RS04375at 997.107 kb on + strand, within HER17_RS04375at 997.107 kb on + strand, within HER17_RS04375at 997.107 kb on + strand, within HER17_RS04375at 997.107 kb on + strand, within HER17_RS04375at 997.107 kb on + strand, within HER17_RS04375at 997.108 kb on - strand, within HER17_RS04375at 997.108 kb on - strand, within HER17_RS04375at 997.121 kb on + strand, within HER17_RS04375at 997.122 kb on - strand, within HER17_RS04375at 997.127 kb on + strand, within HER17_RS04375at 997.128 kb on - strand, within HER17_RS04375at 997.128 kb on - strand, within HER17_RS04375at 997.200 kb on - strandat 997.222 kb on + strandat 997.223 kb on - strandat 997.242 kb on - strandat 997.280 kb on + strandat 997.339 kb on + strand, within HER17_RS04380at 997.358 kb on + strand, within HER17_RS04380at 997.358 kb on + strand, within HER17_RS04380at 997.358 kb on + strand, within HER17_RS04380at 997.422 kb on - strand, within HER17_RS04380at 997.444 kb on - strand, within HER17_RS04380at 997.444 kb on - strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.656 kb on - strand, within HER17_RS04380at 997.656 kb on - strand, within HER17_RS04380at 997.659 kb on - strand, within HER17_RS04380at 997.659 kb on - strand, within HER17_RS04380at 997.701 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.837 kb on + strand, within HER17_RS04380at 997.851 kb on - strand, within HER17_RS04380at 998.024 kb on + strand, within HER17_RS04380at 998.056 kb on - strand, within HER17_RS04380at 998.056 kb on - strand, within HER17_RS04380at 998.089 kb on - strand, within HER17_RS04380at 998.089 kb on - strand, within HER17_RS04380at 998.117 kb on + strand, within HER17_RS04380at 998.118 kb on - strand, within HER17_RS04380at 998.118 kb on - strand, within HER17_RS04380

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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995,593 - -1.0
995,593 - -0.6
995,821 - HER17_RS04370 0.16 -0.2
995,821 - HER17_RS04370 0.16 +0.7
995,825 - HER17_RS04370 0.17 +0.9
995,890 + HER17_RS04370 0.25 +1.4
995,890 + HER17_RS04370 0.25 +1.1
995,891 - HER17_RS04370 0.25 -0.0
995,891 - HER17_RS04370 0.25 -0.4
995,891 - HER17_RS04370 0.25 +0.9
995,891 - HER17_RS04370 0.25 +0.3
995,891 - HER17_RS04370 0.25 -0.7
995,891 - HER17_RS04370 0.25 -0.1
995,931 + HER17_RS04370 0.30 -0.0
995,931 + HER17_RS04370 0.30 +0.4
995,931 + HER17_RS04370 0.30 +1.0
996,180 - HER17_RS04370 0.60 +0.2
996,180 - HER17_RS04370 0.60 -0.3
996,180 - HER17_RS04370 0.60 -0.0
996,187 - HER17_RS04370 0.61 -0.0
996,232 + HER17_RS04370 0.67 +0.3
996,232 + HER17_RS04370 0.67 +0.4
996,298 + HER17_RS04370 0.75 -2.4
996,306 - HER17_RS04370 0.76 +0.5
996,315 + HER17_RS04370 0.77 -0.9
996,316 - HER17_RS04370 0.77 -0.0
996,334 + HER17_RS04370 0.79 +0.6
996,335 - HER17_RS04370 0.79 +0.5
996,405 - HER17_RS04370 0.88 +1.3
996,407 + HER17_RS04370 0.88 +0.2
996,407 + HER17_RS04370 0.88 +0.4
996,407 + HER17_RS04370 0.88 +0.8
996,413 + HER17_RS04370 0.89 -0.0
996,483 - +0.4
996,495 - -0.2
996,515 + -0.6
996,516 - +0.8
996,519 + -1.0
996,519 + +1.4
996,519 + +0.1
996,556 + -0.9
996,570 + -0.2
996,570 + +0.8
996,590 + -0.1
996,590 + -0.9
996,638 + HER17_RS04375 0.11 -0.0
996,641 + HER17_RS04375 0.11 -0.7
996,642 - HER17_RS04375 0.11 -1.3
996,642 - HER17_RS04375 0.11 +0.8
996,642 - HER17_RS04375 0.11 -0.4
996,642 - HER17_RS04375 0.11 +1.6
996,642 - HER17_RS04375 0.11 -0.1
996,644 + HER17_RS04375 0.11 -1.4
996,644 + HER17_RS04375 0.11 +0.8
996,645 - HER17_RS04375 0.12 +0.5
996,645 - HER17_RS04375 0.12 +0.4
996,648 - HER17_RS04375 0.12 +0.6
996,652 + HER17_RS04375 0.13 -0.0
996,671 - HER17_RS04375 0.16 -0.6
996,673 - HER17_RS04375 0.16 -0.1
996,673 - HER17_RS04375 0.16 +1.1
996,679 + HER17_RS04375 0.17 +0.1
996,679 + HER17_RS04375 0.17 +0.2
996,680 - HER17_RS04375 0.17 +0.5
996,681 + HER17_RS04375 0.17 -0.4
996,681 + HER17_RS04375 0.17 +0.2
996,681 + HER17_RS04375 0.17 +0.6
996,682 - HER17_RS04375 0.17 -2.5
996,682 - HER17_RS04375 0.17 -0.2
996,682 - HER17_RS04375 0.17 +1.0
996,682 - HER17_RS04375 0.17 +2.6
996,684 - HER17_RS04375 0.18 -0.3
996,687 + HER17_RS04375 0.18 -0.7
996,688 - HER17_RS04375 0.18 -2.3
996,688 - HER17_RS04375 0.18 +0.9
996,708 - HER17_RS04375 0.21 +0.8
996,708 - HER17_RS04375 0.21 +0.2
996,744 + HER17_RS04375 0.27 -0.1
996,745 - HER17_RS04375 0.27 -1.4
996,749 + HER17_RS04375 0.28 +0.7
996,750 - HER17_RS04375 0.28 -0.5
996,750 - HER17_RS04375 0.28 +0.6
996,758 - HER17_RS04375 0.29 -0.0
996,762 - HER17_RS04375 0.30 +0.6
996,762 - HER17_RS04375 0.30 -1.2
996,781 + HER17_RS04375 0.32 -0.0
996,782 - HER17_RS04375 0.33 -0.6
996,929 + HER17_RS04375 0.55 -0.7
996,929 + HER17_RS04375 0.55 -1.2
996,929 + HER17_RS04375 0.55 +0.1
996,929 + HER17_RS04375 0.55 +0.8
996,929 + HER17_RS04375 0.55 +0.2
996,929 + HER17_RS04375 0.55 +0.5
996,929 + HER17_RS04375 0.55 +0.6
996,930 - HER17_RS04375 0.55 +0.3
996,930 - HER17_RS04375 0.55 +0.1
996,930 - HER17_RS04375 0.55 -0.2
996,930 - HER17_RS04375 0.55 -0.3
996,934 + HER17_RS04375 0.56 -1.0
996,935 - HER17_RS04375 0.56 +0.2
996,935 - HER17_RS04375 0.56 -0.2
996,935 - HER17_RS04375 0.56 +0.5
997,016 - HER17_RS04375 0.68 +0.3
997,016 - HER17_RS04375 0.68 -0.9
997,039 + HER17_RS04375 0.72 +0.6
997,039 + HER17_RS04375 0.72 +0.4
997,040 - HER17_RS04375 0.72 +0.3
997,044 - HER17_RS04375 0.73 -0.6
997,066 - HER17_RS04375 0.76 -0.5
997,106 - HER17_RS04375 0.82 +0.2
997,107 + HER17_RS04375 0.82 +0.4
997,107 + HER17_RS04375 0.82 +0.6
997,107 + HER17_RS04375 0.82 -0.9
997,107 + HER17_RS04375 0.82 -1.3
997,107 + HER17_RS04375 0.82 +0.1
997,108 - HER17_RS04375 0.82 +0.6
997,108 - HER17_RS04375 0.82 -0.0
997,121 + HER17_RS04375 0.84 +2.6
997,122 - HER17_RS04375 0.85 -0.2
997,127 + HER17_RS04375 0.85 -0.5
997,128 - HER17_RS04375 0.85 +1.3
997,128 - HER17_RS04375 0.85 +0.0
997,200 - +0.3
997,222 + +0.8
997,223 - -0.3
997,242 - +0.7
997,280 + +2.7
997,339 + HER17_RS04380 0.12 -0.6
997,358 + HER17_RS04380 0.14 -0.6
997,358 + HER17_RS04380 0.14 -0.6
997,358 + HER17_RS04380 0.14 +1.0
997,422 - HER17_RS04380 0.20 -0.0
997,444 - HER17_RS04380 0.22 -0.1
997,444 - HER17_RS04380 0.22 +0.1
997,655 + HER17_RS04380 0.43 +0.6
997,655 + HER17_RS04380 0.43 +0.9
997,655 + HER17_RS04380 0.43 +1.1
997,656 - HER17_RS04380 0.43 -0.2
997,656 - HER17_RS04380 0.43 +1.2
997,659 - HER17_RS04380 0.43 -0.6
997,659 - HER17_RS04380 0.43 +1.4
997,701 + HER17_RS04380 0.47 +0.4
997,734 + HER17_RS04380 0.50 -0.2
997,734 + HER17_RS04380 0.50 +0.1
997,734 + HER17_RS04380 0.50 -0.1
997,735 - HER17_RS04380 0.50 +0.1
997,735 - HER17_RS04380 0.50 +0.6
997,735 - HER17_RS04380 0.50 -0.6
997,735 - HER17_RS04380 0.50 -1.1
997,735 - HER17_RS04380 0.50 +1.0
997,735 - HER17_RS04380 0.50 +0.1
997,735 - HER17_RS04380 0.50 -0.0
997,837 + HER17_RS04380 0.60 +0.6
997,851 - HER17_RS04380 0.62 +0.4
998,024 + HER17_RS04380 0.78 +1.5
998,056 - HER17_RS04380 0.81 +3.0
998,056 - HER17_RS04380 0.81 -0.3
998,089 - HER17_RS04380 0.85 -0.1
998,089 - HER17_RS04380 0.85 +0.3
998,117 + HER17_RS04380 0.87 +1.2
998,118 - HER17_RS04380 0.88 -2.2
998,118 - HER17_RS04380 0.88 -0.1

Or see this region's nucleotide sequence