Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03610 and HER17_RS03615 are separated by 52 nucleotides HER17_RS03615 and HER17_RS03620 are separated by 118 nucleotides HER17_RS03620 and HER17_RS03625 are separated by 168 nucleotides
HER17_RS03610: HER17_RS03610 - DUF1240 domain-containing protein, at 823,142 to 823,549
_RS03610
HER17_RS03615: HER17_RS03615 - Hcp family type VI secretion system effector, at 823,602 to 824,081
_RS03615
HER17_RS03620: HER17_RS03620 - M48 family metallopeptidase, at 824,200 to 824,703
_RS03620
HER17_RS03625: HER17_RS03625 - aspartate/tyrosine/aromatic aminotransferase, at 824,872 to 826,065
_RS03625
Position (kb) 824
825 Strain fitness (log2 ratio) -1
0
1
2 at 823.326 kb on - strand, within HER17_RS03610 at 823.337 kb on + strand, within HER17_RS03610 at 823.421 kb on - strand, within HER17_RS03610 at 823.442 kb on + strand, within HER17_RS03610 at 823.443 kb on - strand, within HER17_RS03610 at 823.514 kb on + strand at 823.515 kb on - strand at 823.792 kb on - strand, within HER17_RS03615 at 823.957 kb on - strand, within HER17_RS03615 at 823.959 kb on + strand, within HER17_RS03615 at 824.032 kb on - strand, within HER17_RS03615 at 824.034 kb on + strand at 824.105 kb on - strand at 824.151 kb on + strand at 824.268 kb on - strand, within HER17_RS03620 at 824.297 kb on + strand, within HER17_RS03620 at 824.298 kb on - strand, within HER17_RS03620 at 824.387 kb on - strand, within HER17_RS03620 at 824.395 kb on + strand, within HER17_RS03620 at 824.420 kb on - strand, within HER17_RS03620 at 824.451 kb on + strand, within HER17_RS03620 at 824.452 kb on - strand, within HER17_RS03620 at 824.495 kb on + strand, within HER17_RS03620 at 824.531 kb on + strand, within HER17_RS03620 at 824.562 kb on - strand, within HER17_RS03620 at 824.562 kb on - strand, within HER17_RS03620 at 824.651 kb on - strand, within HER17_RS03620 at 824.661 kb on + strand at 824.662 kb on - strand at 824.703 kb on + strand at 824.703 kb on + strand at 824.764 kb on + strand at 824.765 kb on - strand at 824.765 kb on - strand at 824.775 kb on + strand at 824.776 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.866 kb on + strand at 824.867 kb on - strand at 824.873 kb on + strand at 824.934 kb on + strand at 824.934 kb on + strand at 824.934 kb on + strand at 824.940 kb on + strand at 824.940 kb on + strand at 824.940 kb on + strand at 824.941 kb on - strand at 824.960 kb on + strand at 824.961 kb on - strand at 824.961 kb on - strand at 825.024 kb on + strand, within HER17_RS03625 at 825.045 kb on - strand, within HER17_RS03625 at 825.177 kb on + strand, within HER17_RS03625 at 825.178 kb on - strand, within HER17_RS03625 at 825.184 kb on + strand, within HER17_RS03625 at 825.184 kb on + strand, within HER17_RS03625 at 825.184 kb on + strand, within HER17_RS03625 at 825.215 kb on + strand, within HER17_RS03625 at 825.215 kb on + strand, within HER17_RS03625 at 825.216 kb on - strand, within HER17_RS03625 at 825.216 kb on - strand, within HER17_RS03625 at 825.216 kb on - strand, within HER17_RS03625 at 825.238 kb on + strand, within HER17_RS03625 at 825.238 kb on + strand, within HER17_RS03625 at 825.310 kb on - strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.311 kb on + strand, within HER17_RS03625 at 825.312 kb on - strand, within HER17_RS03625 at 825.312 kb on - strand, within HER17_RS03625 at 825.312 kb on - strand, within HER17_RS03625 at 825.312 kb on - strand, within HER17_RS03625 at 825.312 kb on - strand, within HER17_RS03625 at 825.386 kb on + strand, within HER17_RS03625 at 825.387 kb on - strand, within HER17_RS03625 at 825.435 kb on + strand, within HER17_RS03625 at 825.618 kb on - strand, within HER17_RS03625 at 825.664 kb on - strand, within HER17_RS03625 at 825.664 kb on - strand, within HER17_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 823,326 - HER17_RS03610 0.45 -0.0 823,337 + HER17_RS03610 0.48 +0.2 823,421 - HER17_RS03610 0.68 -0.4 823,442 + HER17_RS03610 0.74 +1.5 823,443 - HER17_RS03610 0.74 +0.2 823,514 + +0.7 823,515 - +0.2 823,792 - HER17_RS03615 0.40 +0.8 823,957 - HER17_RS03615 0.74 +0.3 823,959 + HER17_RS03615 0.74 +0.9 824,032 - HER17_RS03615 0.90 -0.9 824,034 + +0.1 824,105 - -0.4 824,151 + +0.1 824,268 - HER17_RS03620 0.13 +0.1 824,297 + HER17_RS03620 0.19 +0.1 824,298 - HER17_RS03620 0.19 -0.9 824,387 - HER17_RS03620 0.37 -0.6 824,395 + HER17_RS03620 0.39 -0.2 824,420 - HER17_RS03620 0.44 +1.0 824,451 + HER17_RS03620 0.50 -0.3 824,452 - HER17_RS03620 0.50 -0.9 824,495 + HER17_RS03620 0.59 -0.3 824,531 + HER17_RS03620 0.66 -0.2 824,562 - HER17_RS03620 0.72 +0.5 824,562 - HER17_RS03620 0.72 -0.5 824,651 - HER17_RS03620 0.89 +1.2 824,661 + -1.2 824,662 - -1.2 824,703 + +0.8 824,703 + -0.5 824,764 + +0.4 824,765 - -0.1 824,765 - +0.5 824,775 + +0.8 824,776 - -0.5 824,789 + -0.6 824,789 + -0.8 824,789 + -0.1 824,866 + -0.2 824,867 - +0.2 824,873 + +0.6 824,934 + -0.0 824,934 + -0.5 824,934 + -0.2 824,940 + +0.9 824,940 + +1.7 824,940 + +0.9 824,941 - +0.1 824,960 + -1.7 824,961 - -0.1 824,961 - +0.7 825,024 + HER17_RS03625 0.13 -1.1 825,045 - HER17_RS03625 0.14 +0.5 825,177 + HER17_RS03625 0.26 -0.6 825,178 - HER17_RS03625 0.26 -0.0 825,184 + HER17_RS03625 0.26 -0.0 825,184 + HER17_RS03625 0.26 -1.5 825,184 + HER17_RS03625 0.26 -0.5 825,215 + HER17_RS03625 0.29 -0.6 825,215 + HER17_RS03625 0.29 +1.8 825,216 - HER17_RS03625 0.29 +0.1 825,216 - HER17_RS03625 0.29 -1.0 825,216 - HER17_RS03625 0.29 +0.0 825,238 + HER17_RS03625 0.31 +0.5 825,238 + HER17_RS03625 0.31 -1.0 825,310 - HER17_RS03625 0.37 +0.6 825,311 + HER17_RS03625 0.37 -0.6 825,311 + HER17_RS03625 0.37 +0.3 825,311 + HER17_RS03625 0.37 -0.7 825,311 + HER17_RS03625 0.37 +0.9 825,311 + HER17_RS03625 0.37 +1.3 825,311 + HER17_RS03625 0.37 +0.1 825,312 - HER17_RS03625 0.37 -0.2 825,312 - HER17_RS03625 0.37 +1.7 825,312 - HER17_RS03625 0.37 -1.0 825,312 - HER17_RS03625 0.37 +1.0 825,312 - HER17_RS03625 0.37 +2.0 825,386 + HER17_RS03625 0.43 +0.7 825,387 - HER17_RS03625 0.43 +2.7 825,435 + HER17_RS03625 0.47 -1.5 825,618 - HER17_RS03625 0.62 +0.0 825,664 - HER17_RS03625 0.66 +0.2 825,664 - HER17_RS03625 0.66 -0.5
Or see this region's nucleotide sequence