Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00920

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00915 and HER17_RS00920 are separated by 218 nucleotidesHER17_RS00920 and HER17_RS00925 are separated by 49 nucleotides HER17_RS00915: HER17_RS00915 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 210,017 to 212,452 _RS00915 HER17_RS00920: HER17_RS00920 - ABC transporter ATP-binding protein, at 212,671 to 213,837 _RS00920 HER17_RS00925: HER17_RS00925 - extracellular solute-binding protein, at 213,887 to 214,993 _RS00925 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.692 kb on - strand, within HER17_RS00915at 211.692 kb on - strand, within HER17_RS00915at 211.692 kb on - strand, within HER17_RS00915at 211.709 kb on + strand, within HER17_RS00915at 211.709 kb on + strand, within HER17_RS00915at 211.710 kb on - strand, within HER17_RS00915at 211.710 kb on - strand, within HER17_RS00915at 211.762 kb on + strand, within HER17_RS00915at 211.762 kb on + strand, within HER17_RS00915at 211.762 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.814 kb on + strand, within HER17_RS00915at 211.815 kb on - strand, within HER17_RS00915at 211.815 kb on - strand, within HER17_RS00915at 211.815 kb on - strand, within HER17_RS00915at 211.816 kb on + strand, within HER17_RS00915at 211.885 kb on + strand, within HER17_RS00915at 211.885 kb on + strand, within HER17_RS00915at 211.885 kb on + strand, within HER17_RS00915at 211.886 kb on - strand, within HER17_RS00915at 212.044 kb on + strand, within HER17_RS00915at 212.044 kb on + strand, within HER17_RS00915at 212.045 kb on - strand, within HER17_RS00915at 212.045 kb on - strand, within HER17_RS00915at 212.076 kb on - strand, within HER17_RS00915at 212.076 kb on - strand, within HER17_RS00915at 212.147 kb on + strand, within HER17_RS00915at 212.148 kb on - strand, within HER17_RS00915at 212.450 kb on + strandat 212.463 kb on - strandat 212.463 kb on - strandat 212.463 kb on - strandat 212.510 kb on + strandat 212.546 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.723 kb on + strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.724 kb on - strandat 212.821 kb on - strand, within HER17_RS00920at 212.839 kb on - strand, within HER17_RS00920at 212.895 kb on + strand, within HER17_RS00920at 212.896 kb on - strand, within HER17_RS00920at 212.896 kb on - strand, within HER17_RS00920at 212.947 kb on + strand, within HER17_RS00920at 212.947 kb on + strand, within HER17_RS00920at 212.947 kb on + strand, within HER17_RS00920at 212.947 kb on + strand, within HER17_RS00920at 212.947 kb on + strand, within HER17_RS00920at 212.948 kb on - strand, within HER17_RS00920at 212.948 kb on - strand, within HER17_RS00920at 212.948 kb on - strand, within HER17_RS00920at 212.982 kb on + strand, within HER17_RS00920at 212.983 kb on - strand, within HER17_RS00920at 212.983 kb on - strand, within HER17_RS00920at 213.085 kb on - strand, within HER17_RS00920at 213.207 kb on - strand, within HER17_RS00920at 213.361 kb on + strand, within HER17_RS00920at 213.361 kb on + strand, within HER17_RS00920at 213.361 kb on + strand, within HER17_RS00920at 213.361 kb on + strand, within HER17_RS00920at 213.361 kb on + strand, within HER17_RS00920at 213.362 kb on - strand, within HER17_RS00920at 213.362 kb on - strand, within HER17_RS00920at 213.444 kb on + strand, within HER17_RS00920at 213.495 kb on + strand, within HER17_RS00920at 213.495 kb on + strand, within HER17_RS00920at 213.496 kb on - strand, within HER17_RS00920at 213.496 kb on - strand, within HER17_RS00920at 213.496 kb on - strand, within HER17_RS00920at 213.553 kb on + strand, within HER17_RS00920at 213.625 kb on + strand, within HER17_RS00920at 213.626 kb on - strand, within HER17_RS00920at 213.648 kb on + strand, within HER17_RS00920at 213.648 kb on + strand, within HER17_RS00920at 213.697 kb on + strand, within HER17_RS00920at 213.771 kb on + strandat 213.772 kb on - strandat 213.772 kb on - strandat 213.772 kb on - strandat 213.772 kb on - strandat 213.859 kb on + strandat 213.861 kb on - strandat 213.895 kb on + strandat 213.927 kb on + strandat 213.927 kb on + strandat 213.965 kb on + strandat 213.966 kb on - strandat 213.977 kb on + strandat 213.977 kb on + strandat 213.978 kb on - strandat 213.978 kb on - strandat 213.978 kb on - strandat 213.981 kb on + strandat 213.982 kb on - strandat 214.021 kb on - strand, within HER17_RS00925at 214.182 kb on - strand, within HER17_RS00925at 214.193 kb on - strand, within HER17_RS00925at 214.259 kb on + strand, within HER17_RS00925at 214.259 kb on + strand, within HER17_RS00925at 214.259 kb on + strand, within HER17_RS00925at 214.260 kb on - strand, within HER17_RS00925at 214.260 kb on - strand, within HER17_RS00925at 214.280 kb on - strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.298 kb on + strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.299 kb on - strand, within HER17_RS00925at 214.315 kb on - strand, within HER17_RS00925at 214.315 kb on - strand, within HER17_RS00925at 214.334 kb on + strand, within HER17_RS00925at 214.335 kb on - strand, within HER17_RS00925at 214.335 kb on - strand, within HER17_RS00925at 214.393 kb on + strand, within HER17_RS00925at 214.393 kb on + strand, within HER17_RS00925at 214.394 kb on - strand, within HER17_RS00925at 214.436 kb on + strand, within HER17_RS00925at 214.437 kb on - strand, within HER17_RS00925at 214.437 kb on - strand, within HER17_RS00925at 214.442 kb on + strand, within HER17_RS00925at 214.534 kb on + strand, within HER17_RS00925at 214.537 kb on + strand, within HER17_RS00925at 214.537 kb on + strand, within HER17_RS00925at 214.537 kb on + strand, within HER17_RS00925at 214.537 kb on + strand, within HER17_RS00925at 214.538 kb on - strand, within HER17_RS00925at 214.538 kb on - strand, within HER17_RS00925at 214.631 kb on + strand, within HER17_RS00925at 214.631 kb on + strand, within HER17_RS00925at 214.632 kb on - strand, within HER17_RS00925at 214.632 kb on - strand, within HER17_RS00925at 214.632 kb on - strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.715 kb on + strand, within HER17_RS00925at 214.716 kb on - strand, within HER17_RS00925at 214.716 kb on - strand, within HER17_RS00925at 214.716 kb on - strand, within HER17_RS00925at 214.716 kb on - strand, within HER17_RS00925at 214.754 kb on - strand, within HER17_RS00925at 214.816 kb on + strand, within HER17_RS00925at 214.816 kb on + strand, within HER17_RS00925at 214.817 kb on - strand, within HER17_RS00925

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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211,692 - HER17_RS00915 0.69 -0.5
211,692 - HER17_RS00915 0.69 +0.8
211,692 - HER17_RS00915 0.69 +1.1
211,709 + HER17_RS00915 0.69 +0.2
211,709 + HER17_RS00915 0.69 +0.2
211,710 - HER17_RS00915 0.69 +0.5
211,710 - HER17_RS00915 0.69 +2.2
211,762 + HER17_RS00915 0.72 -0.5
211,762 + HER17_RS00915 0.72 -0.4
211,762 + HER17_RS00915 0.72 +0.9
211,814 + HER17_RS00915 0.74 +0.0
211,814 + HER17_RS00915 0.74 +0.2
211,814 + HER17_RS00915 0.74 +0.0
211,814 + HER17_RS00915 0.74 +0.4
211,814 + HER17_RS00915 0.74 -0.6
211,814 + HER17_RS00915 0.74 -0.1
211,814 + HER17_RS00915 0.74 +0.7
211,815 - HER17_RS00915 0.74 +0.0
211,815 - HER17_RS00915 0.74 +1.2
211,815 - HER17_RS00915 0.74 +0.1
211,816 + HER17_RS00915 0.74 +0.1
211,885 + HER17_RS00915 0.77 +0.2
211,885 + HER17_RS00915 0.77 +0.8
211,885 + HER17_RS00915 0.77 +0.0
211,886 - HER17_RS00915 0.77 +0.7
212,044 + HER17_RS00915 0.83 +0.8
212,044 + HER17_RS00915 0.83 -1.0
212,045 - HER17_RS00915 0.83 -0.7
212,045 - HER17_RS00915 0.83 -0.3
212,076 - HER17_RS00915 0.85 -1.2
212,076 - HER17_RS00915 0.85 +0.5
212,147 + HER17_RS00915 0.87 -0.1
212,148 - HER17_RS00915 0.87 +0.6
212,450 + -0.2
212,463 - +1.5
212,463 - +1.6
212,463 - +0.5
212,510 + -1.1
212,546 + -0.2
212,723 + +0.1
212,723 + +0.4
212,723 + +0.2
212,723 + -0.8
212,723 + +0.2
212,723 + +0.1
212,723 + -1.0
212,724 - +0.4
212,724 - +0.0
212,724 - -0.7
212,724 - -1.0
212,724 - +1.7
212,724 - -0.1
212,724 - -0.9
212,724 - -0.4
212,724 - +0.3
212,821 - HER17_RS00920 0.13 +0.8
212,839 - HER17_RS00920 0.14 +0.4
212,895 + HER17_RS00920 0.19 -2.1
212,896 - HER17_RS00920 0.19 -1.2
212,896 - HER17_RS00920 0.19 +0.0
212,947 + HER17_RS00920 0.24 -0.1
212,947 + HER17_RS00920 0.24 +0.2
212,947 + HER17_RS00920 0.24 -0.2
212,947 + HER17_RS00920 0.24 -0.8
212,947 + HER17_RS00920 0.24 -1.3
212,948 - HER17_RS00920 0.24 +0.0
212,948 - HER17_RS00920 0.24 +0.2
212,948 - HER17_RS00920 0.24 +0.2
212,982 + HER17_RS00920 0.27 -0.2
212,983 - HER17_RS00920 0.27 -0.2
212,983 - HER17_RS00920 0.27 +0.0
213,085 - HER17_RS00920 0.35 +0.1
213,207 - HER17_RS00920 0.46 -0.8
213,361 + HER17_RS00920 0.59 +1.0
213,361 + HER17_RS00920 0.59 -0.3
213,361 + HER17_RS00920 0.59 -1.1
213,361 + HER17_RS00920 0.59 -1.0
213,361 + HER17_RS00920 0.59 -0.7
213,362 - HER17_RS00920 0.59 -1.3
213,362 - HER17_RS00920 0.59 +0.5
213,444 + HER17_RS00920 0.66 -0.4
213,495 + HER17_RS00920 0.71 -0.1
213,495 + HER17_RS00920 0.71 +0.0
213,496 - HER17_RS00920 0.71 +0.4
213,496 - HER17_RS00920 0.71 -0.9
213,496 - HER17_RS00920 0.71 +0.3
213,553 + HER17_RS00920 0.76 +1.1
213,625 + HER17_RS00920 0.82 +0.3
213,626 - HER17_RS00920 0.82 +0.0
213,648 + HER17_RS00920 0.84 -1.2
213,648 + HER17_RS00920 0.84 +0.1
213,697 + HER17_RS00920 0.88 -0.1
213,771 + +0.9
213,772 - -1.0
213,772 - -1.6
213,772 - +0.5
213,772 - +0.4
213,859 + -0.0
213,861 - +0.4
213,895 + -1.3
213,927 + -0.9
213,927 + +0.3
213,965 + -0.1
213,966 - -1.1
213,977 + -0.4
213,977 + -0.1
213,978 - +1.2
213,978 - -0.8
213,978 - +0.6
213,981 + -0.1
213,982 - -0.1
214,021 - HER17_RS00925 0.12 +0.2
214,182 - HER17_RS00925 0.27 +1.5
214,193 - HER17_RS00925 0.28 +0.5
214,259 + HER17_RS00925 0.34 +0.5
214,259 + HER17_RS00925 0.34 +0.4
214,259 + HER17_RS00925 0.34 +0.7
214,260 - HER17_RS00925 0.34 +0.7
214,260 - HER17_RS00925 0.34 +0.0
214,280 - HER17_RS00925 0.36 +0.4
214,298 + HER17_RS00925 0.37 -0.8
214,298 + HER17_RS00925 0.37 -0.0
214,298 + HER17_RS00925 0.37 +0.1
214,298 + HER17_RS00925 0.37 -0.1
214,298 + HER17_RS00925 0.37 -1.2
214,298 + HER17_RS00925 0.37 -1.0
214,298 + HER17_RS00925 0.37 -0.2
214,298 + HER17_RS00925 0.37 -0.2
214,299 - HER17_RS00925 0.37 -0.9
214,299 - HER17_RS00925 0.37 +0.1
214,299 - HER17_RS00925 0.37 +0.2
214,299 - HER17_RS00925 0.37 -0.2
214,299 - HER17_RS00925 0.37 -0.6
214,299 - HER17_RS00925 0.37 -0.1
214,299 - HER17_RS00925 0.37 -0.5
214,299 - HER17_RS00925 0.37 -2.2
214,299 - HER17_RS00925 0.37 +0.1
214,299 - HER17_RS00925 0.37 +0.5
214,299 - HER17_RS00925 0.37 +0.9
214,299 - HER17_RS00925 0.37 +1.7
214,299 - HER17_RS00925 0.37 -0.2
214,315 - HER17_RS00925 0.39 +0.2
214,315 - HER17_RS00925 0.39 -1.1
214,334 + HER17_RS00925 0.40 +0.1
214,335 - HER17_RS00925 0.40 -0.3
214,335 - HER17_RS00925 0.40 -1.5
214,393 + HER17_RS00925 0.46 -0.4
214,393 + HER17_RS00925 0.46 -0.2
214,394 - HER17_RS00925 0.46 -0.5
214,436 + HER17_RS00925 0.50 +1.4
214,437 - HER17_RS00925 0.50 -0.6
214,437 - HER17_RS00925 0.50 +0.7
214,442 + HER17_RS00925 0.50 -0.4
214,534 + HER17_RS00925 0.58 -0.9
214,537 + HER17_RS00925 0.59 -0.5
214,537 + HER17_RS00925 0.59 +0.4
214,537 + HER17_RS00925 0.59 -0.1
214,537 + HER17_RS00925 0.59 -1.4
214,538 - HER17_RS00925 0.59 +0.6
214,538 - HER17_RS00925 0.59 -0.7
214,631 + HER17_RS00925 0.67 +0.3
214,631 + HER17_RS00925 0.67 -1.3
214,632 - HER17_RS00925 0.67 -0.1
214,632 - HER17_RS00925 0.67 -0.6
214,632 - HER17_RS00925 0.67 +0.5
214,715 + HER17_RS00925 0.75 +1.6
214,715 + HER17_RS00925 0.75 +0.1
214,715 + HER17_RS00925 0.75 +1.1
214,715 + HER17_RS00925 0.75 +0.0
214,715 + HER17_RS00925 0.75 +0.2
214,715 + HER17_RS00925 0.75 +0.9
214,715 + HER17_RS00925 0.75 +1.9
214,715 + HER17_RS00925 0.75 +0.2
214,715 + HER17_RS00925 0.75 -0.5
214,715 + HER17_RS00925 0.75 +0.2
214,716 - HER17_RS00925 0.75 -0.0
214,716 - HER17_RS00925 0.75 -0.0
214,716 - HER17_RS00925 0.75 -0.3
214,716 - HER17_RS00925 0.75 -1.6
214,754 - HER17_RS00925 0.78 -0.1
214,816 + HER17_RS00925 0.84 -0.2
214,816 + HER17_RS00925 0.84 -0.4
214,817 - HER17_RS00925 0.84 +0.4

Or see this region's nucleotide sequence