Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18685

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,198,000	+		HER17_RS18680	0.31	+0.4
4,198,000	+		HER17_RS18680	0.31	+0.8
4,198,000	+		HER17_RS18680	0.31	-1.4
4,198,000	+		HER17_RS18680	0.31	-2.2
4,198,000	+		HER17_RS18680	0.31	+0.3
4,198,001	-		HER17_RS18680	0.31	-0.4
4,198,001	-		HER17_RS18680	0.31	-1.0
4,198,001	-		HER17_RS18680	0.31	+1.3
4,198,001	-		HER17_RS18680	0.31	+0.8
4,198,094	+		HER17_RS18680	0.39	+1.2
4,198,094	+		HER17_RS18680	0.39	+0.4
4,198,101	+		HER17_RS18680	0.40	+0.2
4,198,102	-		HER17_RS18680	0.40	+0.3
4,198,102	-		HER17_RS18680	0.40	+1.3
4,198,124	+		HER17_RS18680	0.42	-0.4
4,198,124	+		HER17_RS18680	0.42	-0.5
4,198,154	+		HER17_RS18680	0.44	-0.2
4,198,162	+		HER17_RS18680	0.45	-0.7
4,198,163	-		HER17_RS18680	0.45	-1.2
4,198,163	-		HER17_RS18680	0.45	+0.6
4,198,163	-		HER17_RS18680	0.45	+1.0
4,198,170	-		HER17_RS18680	0.46	+0.6
4,198,220	+		HER17_RS18680	0.50	-0.5
4,198,221	-		HER17_RS18680	0.50	+0.4
4,198,221	-		HER17_RS18680	0.50	+0.0
4,198,334	+		HER17_RS18680	0.60	+0.8
4,198,334	+		HER17_RS18680	0.60	+0.4
4,198,334	+		HER17_RS18680	0.60	-0.1
4,198,334	+		HER17_RS18680	0.60	+0.1
4,198,340	+		HER17_RS18680	0.61	-0.1
4,198,341	-		HER17_RS18680	0.61	+0.1
4,198,341	-		HER17_RS18680	0.61	+1.8
4,198,341	-		HER17_RS18680	0.61	-0.2
4,198,341	-		HER17_RS18680	0.61	-0.2
4,198,347	-		HER17_RS18680	0.61	-0.3
4,198,476	+		HER17_RS18680	0.73	+0.7
4,198,477	-		HER17_RS18680	0.73	+0.4
4,198,490	+		HER17_RS18680	0.74	-0.2
4,198,538	+		HER17_RS18680	0.78	-0.4
4,198,538	+		HER17_RS18680	0.78	+0.0
4,198,539	-		HER17_RS18680	0.78	+0.8
4,198,539	-		HER17_RS18680	0.78	-0.4
4,198,564	+		HER17_RS18680	0.80	+0.1
4,198,564	+		HER17_RS18680	0.80	+0.3
4,198,564	+		HER17_RS18680	0.80	+0.8
4,198,565	-		HER17_RS18680	0.80	+0.1
4,198,565	-		HER17_RS18680	0.80	-0.0
4,198,565	-		HER17_RS18680	0.80	+1.2
4,198,565	-		HER17_RS18680	0.80	+0.3
4,198,565	-		HER17_RS18680	0.80	+0.4
4,198,625	+		HER17_RS18680	0.86	+0.1
4,198,625	+		HER17_RS18680	0.86	+0.5
4,198,626	-		HER17_RS18680	0.86	-0.1
4,198,626	-		HER17_RS18680	0.86	+0.7
4,198,626	-		HER17_RS18680	0.86	-1.0
4,198,687	+				+0.0
4,198,687	+				+0.6
4,198,688	-				-0.4
4,198,688	-				-1.3
4,198,788	+				-0.2
4,198,821	+				+0.7
4,198,833	+				+1.5
4,198,844	+				-0.1
4,198,844	+				+0.0
4,198,845	-				+0.5
4,198,845	-				+2.6
4,198,845	-				-0.2
4,198,845	-				-0.4
4,198,904	+				-0.6
4,198,905	-				-0.0
4,198,913	+				+0.3
4,198,913	+				-0.2
4,198,913	+				-0.2
4,198,913	+				-1.7
4,198,932	+				+0.6
4,198,949	-				-0.6
4,198,968	+				+0.7
4,198,969	-				-0.6
4,198,969	-				+1.9
4,198,969	-				+0.0
4,198,975	+				-0.1
4,198,975	+				+0.2
4,199,084	+		HER17_RS18685	0.14	-0.6
4,199,084	+		HER17_RS18685	0.14	-0.2
4,199,085	-		HER17_RS18685	0.14	+1.6
4,199,085	-		HER17_RS18685	0.14	-1.4
4,199,085	-		HER17_RS18685	0.14	-0.0
4,199,150	+		HER17_RS18685	0.20	-1.2
4,199,151	-		HER17_RS18685	0.20	-1.7
4,199,151	-		HER17_RS18685	0.20	+1.4
4,199,269	-		HER17_RS18685	0.32	+0.5
4,199,295	+		HER17_RS18685	0.35	+0.8
4,199,377	+		HER17_RS18685	0.43	+0.6
4,199,378	-		HER17_RS18685	0.43	+0.2
4,199,393	+		HER17_RS18685	0.44	+0.0
4,199,393	+		HER17_RS18685	0.44	+0.2
4,199,393	+		HER17_RS18685	0.44	+0.2
4,199,394	-		HER17_RS18685	0.45	-0.1
4,199,402	+		HER17_RS18685	0.45	-0.2
4,199,403	-		HER17_RS18685	0.45	+0.4
4,199,423	+		HER17_RS18685	0.47	-0.5
4,199,423	+		HER17_RS18685	0.47	+0.8
4,199,495	+		HER17_RS18685	0.55	-0.5
4,199,495	+		HER17_RS18685	0.55	+0.3
4,199,495	+		HER17_RS18685	0.55	-1.1
4,199,495	+		HER17_RS18685	0.55	+0.2
4,199,495	+		HER17_RS18685	0.55	-0.1
4,199,495	+		HER17_RS18685	0.55	+1.3
4,199,496	-		HER17_RS18685	0.55	-0.1
4,199,496	-		HER17_RS18685	0.55	+0.0
4,199,604	-		HER17_RS18685	0.66	+0.0
4,199,717	-		HER17_RS18685	0.77	+0.3
4,199,721	+		HER17_RS18685	0.77	-0.3
4,199,722	-		HER17_RS18685	0.77	+0.0
4,199,773	+		HER17_RS18685	0.82	-0.5
4,199,773	+		HER17_RS18685	0.82	+0.3
4,199,773	+		HER17_RS18685	0.82	-1.2
4,199,773	+		HER17_RS18685	0.82	+0.2
4,199,789	+		HER17_RS18685	0.84	-0.3
4,199,790	-		HER17_RS18685	0.84	-0.8
4,199,824	+		HER17_RS18685	0.88	+0.5
4,199,907	+				+0.7
4,199,907	+				+0.4
4,199,907	+				+0.0
4,199,946	-				+0.4
4,199,960	+				+0.5
4,199,986	+				-0.4
4,199,987	-				-0.4
4,200,036	+				-0.2
4,200,036	+				+1.6
4,200,046	+				+0.6
4,200,046	+				+0.7
4,200,088	+				+0.8
4,200,088	+				+1.0
4,200,097	-				+0.8
4,200,097	-				+0.3
4,200,097	-				+0.8
4,200,188	+				+0.2
4,200,188	+				+0.2
4,200,189	-				-0.6
4,200,200	+				-0.8
4,200,200	+				+1.0
4,200,200	+				+1.2
4,200,200	+				-0.0
4,200,251	+				+0.0
4,200,251	+				-0.3
4,200,251	+				+1.1
4,200,253	+				+0.5
4,200,253	+				-0.3
4,200,253	+				+0.9
4,200,253	+				+0.7
4,200,254	-				+0.0
4,200,254	-				-0.4
4,200,254	-				-0.8
4,200,280	-				-0.3
4,200,280	-				+2.6
4,200,335	+		HER17_RS18690	0.14	-0.1
4,200,335	+		HER17_RS18690	0.14	-0.2
4,200,384	+		HER17_RS18690	0.19	+0.6
4,200,384	+		HER17_RS18690	0.19	-0.2
4,200,385	-		HER17_RS18690	0.19	+0.4
4,200,447	+		HER17_RS18690	0.26	+0.2
4,200,448	-		HER17_RS18690	0.26	+0.2
4,200,499	+		HER17_RS18690	0.31	+1.0
4,200,500	-		HER17_RS18690	0.31	+0.4
4,200,507	+		HER17_RS18690	0.32	-0.1
4,200,508	-		HER17_RS18690	0.32	-0.3
4,200,508	-		HER17_RS18690	0.32	+0.6
4,200,550	-		HER17_RS18690	0.37	+0.9
4,200,634	-		HER17_RS18690	0.45	+0.3
4,200,634	-		HER17_RS18690	0.45	+0.2
4,200,634	-		HER17_RS18690	0.45	+0.0
4,200,802	-		HER17_RS18690	0.63	-0.4
4,200,830	+		HER17_RS18690	0.66	-0.1
4,200,863	-		HER17_RS18690	0.69	-0.3
4,200,869	+		HER17_RS18690	0.70	-0.5
4,200,911	-		HER17_RS18690	0.74	+0.3
4,200,933	-		HER17_RS18690	0.77	+0.7
4,200,933	-		HER17_RS18690	0.77	+0.4