Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16645

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,754,307	-				-1.9
3,754,307	-				+0.0
3,754,364	-				+0.4
3,754,426	-		HER17_RS16640	0.15	+1.1
3,754,471	+		HER17_RS16640	0.19	+0.7
3,754,472	-		HER17_RS16640	0.19	-0.4
3,754,754	+		HER17_RS16640	0.45	+0.9
3,754,754	+		HER17_RS16640	0.45	+0.3
3,754,754	+		HER17_RS16640	0.45	-0.7
3,754,754	+		HER17_RS16640	0.45	-0.1
3,754,755	-		HER17_RS16640	0.46	+0.8
3,754,755	-		HER17_RS16640	0.46	-0.6
3,754,755	-		HER17_RS16640	0.46	+0.7
3,754,755	-		HER17_RS16640	0.46	-0.7
3,754,755	-		HER17_RS16640	0.46	+0.0
3,754,755	-		HER17_RS16640	0.46	+1.2
3,754,762	+		HER17_RS16640	0.46	+0.8
3,754,763	-		HER17_RS16640	0.46	-0.2
3,754,774	+		HER17_RS16640	0.47	+1.0
3,754,774	+		HER17_RS16640	0.47	+0.7
3,754,809	-		HER17_RS16640	0.51	+0.3
3,754,843	-		HER17_RS16640	0.54	+0.0
3,754,889	+		HER17_RS16640	0.58	-1.5
3,754,890	-		HER17_RS16640	0.58	-0.2
3,754,918	+		HER17_RS16640	0.61	-0.0
3,754,919	-		HER17_RS16640	0.61	-1.0
3,754,924	+		HER17_RS16640	0.61	-0.4
3,754,924	+		HER17_RS16640	0.61	+0.7
3,754,925	-		HER17_RS16640	0.61	+0.1
3,754,925	-		HER17_RS16640	0.61	-0.7
3,754,925	-		HER17_RS16640	0.61	+0.3
3,754,990	-		HER17_RS16640	0.67	-0.1
3,754,990	-		HER17_RS16640	0.67	-0.2
3,755,016	+		HER17_RS16640	0.70	-0.8
3,755,017	-		HER17_RS16640	0.70	-0.0
3,755,018	+		HER17_RS16640	0.70	-0.1
3,755,019	-		HER17_RS16640	0.70	+0.0
3,755,019	-		HER17_RS16640	0.70	-0.8
3,755,019	-		HER17_RS16640	0.70	-0.1
3,755,019	-		HER17_RS16640	0.70	+0.1
3,755,113	+		HER17_RS16640	0.79	+0.8
3,755,114	-		HER17_RS16640	0.79	-0.5
3,755,432	+		HER17_RS16645	0.12	+0.9
3,755,457	-		HER17_RS16645	0.14	-0.5
3,755,501	+		HER17_RS16645	0.19	+0.6
3,755,502	-		HER17_RS16645	0.19	-0.7
3,755,502	-		HER17_RS16645	0.19	+0.6
3,755,503	+		HER17_RS16645	0.19	+1.8
3,755,503	+		HER17_RS16645	0.19	-1.2
3,755,504	-		HER17_RS16645	0.19	+1.2
3,755,504	-		HER17_RS16645	0.19	+0.9
3,755,504	-		HER17_RS16645	0.19	+0.3
3,755,504	-		HER17_RS16645	0.19	-1.1
3,755,504	-		HER17_RS16645	0.19	+0.3
3,755,573	+		HER17_RS16645	0.25	+0.9
3,755,573	+		HER17_RS16645	0.25	-0.2
3,755,573	+		HER17_RS16645	0.25	+0.3
3,755,574	-		HER17_RS16645	0.26	+0.7
3,755,574	-		HER17_RS16645	0.26	-0.7
3,755,574	-		HER17_RS16645	0.26	-0.4
3,755,574	-		HER17_RS16645	0.26	+1.6
3,755,699	+		HER17_RS16645	0.38	+0.5
3,755,700	-		HER17_RS16645	0.38	+0.6
3,755,715	+		HER17_RS16645	0.39	+0.1
3,755,716	-		HER17_RS16645	0.39	-0.2
3,755,716	-		HER17_RS16645	0.39	+0.3
3,755,716	-		HER17_RS16645	0.39	+1.0
3,755,735	+		HER17_RS16645	0.41	+0.0
3,755,735	+		HER17_RS16645	0.41	-0.3
3,755,873	+		HER17_RS16645	0.54	-0.1
3,755,936	+		HER17_RS16645	0.60	+0.6
3,755,937	-		HER17_RS16645	0.60	+0.1
3,755,939	+		HER17_RS16645	0.61	-0.4
3,755,940	-		HER17_RS16645	0.61	-1.4
3,755,958	+		HER17_RS16645	0.62	+0.2
3,755,985	-		HER17_RS16645	0.65	+0.9
3,755,990	+		HER17_RS16645	0.65	-0.4
3,756,012	-		HER17_RS16645	0.68	-0.7
3,756,026	+		HER17_RS16645	0.69	-1.7
3,756,026	+		HER17_RS16645	0.69	-0.3
3,756,026	+		HER17_RS16645	0.69	-0.1
3,756,027	-		HER17_RS16645	0.69	-1.6
3,756,028	+		HER17_RS16645	0.69	+0.1
3,756,028	+		HER17_RS16645	0.69	-0.3
3,756,028	+		HER17_RS16645	0.69	-0.1
3,756,028	+		HER17_RS16645	0.69	+0.3
3,756,028	+		HER17_RS16645	0.69	+0.2
3,756,028	+		HER17_RS16645	0.69	-2.6
3,756,029	-		HER17_RS16645	0.69	-0.7
3,756,029	-		HER17_RS16645	0.69	+0.1
3,756,029	-		HER17_RS16645	0.69	+0.0
3,756,029	-		HER17_RS16645	0.69	+0.4
3,756,068	+		HER17_RS16645	0.73	-1.2
3,756,113	-		HER17_RS16645	0.77	-2.5
3,756,236	+		HER17_RS16645	0.89	-1.5
3,756,237	-		HER17_RS16645	0.89	+0.6
3,756,237	-		HER17_RS16645	0.89	+0.6
3,756,261	+				+1.0
3,756,262	-				+0.4
3,756,312	+				+0.1
3,756,350	+				-0.2
3,756,350	+				-1.1
3,756,350	+				+0.4
3,756,350	+				+0.4
3,756,350	+				-0.7
3,756,351	-				+0.5
3,756,354	+				+0.3
3,756,355	-				+0.8
3,756,430	+				-0.8
3,756,435	-				+0.5
3,756,435	-				-0.1
3,756,435	-				+1.1
3,756,438	-				-0.5
3,756,545	+				-0.3
3,756,545	+				-0.0
3,756,545	+				+0.3
3,756,545	+				+0.1
3,756,546	-				+0.3
3,756,547	+				+0.0
3,756,547	+				+0.5
3,756,547	+				+0.0
3,756,548	-				+0.3
3,756,594	+				+0.2
3,756,594	+				+0.1
3,756,594	+				-0.2
3,756,594	+				+0.3
3,756,594	+				-0.6
3,756,595	-				-0.6
3,756,595	-				-0.5
3,756,595	-				+0.1
3,756,598	-				+0.3
3,756,633	+				+0.3
3,756,634	-				-0.0
3,756,634	-				+0.4
3,756,648	-				-0.5
3,756,727	+		HER17_RS16650	0.19	-0.8
3,756,727	+		HER17_RS16650	0.19	-1.8
3,756,727	+		HER17_RS16650	0.19	-0.4
3,756,728	-		HER17_RS16650	0.20	+0.9
3,756,728	-		HER17_RS16650	0.20	+1.2
3,756,728	-		HER17_RS16650	0.20	-0.1
3,756,801	+		HER17_RS16650	0.28	+0.2
3,756,801	+		HER17_RS16650	0.28	-0.4
3,756,801	+		HER17_RS16650	0.28	-0.2
3,756,801	+		HER17_RS16650	0.28	-0.2
3,756,802	-		HER17_RS16650	0.28	-0.5
3,756,802	-		HER17_RS16650	0.28	+0.0
3,756,823	-		HER17_RS16650	0.31	+0.2
3,756,858	+		HER17_RS16650	0.35	+0.2
3,756,858	+		HER17_RS16650	0.35	+0.1
3,756,858	+		HER17_RS16650	0.35	-0.0
3,756,858	+		HER17_RS16650	0.35	+0.2
3,756,858	+		HER17_RS16650	0.35	+0.2
3,756,859	-		HER17_RS16650	0.35	+0.4
3,756,911	+		HER17_RS16650	0.41	-0.0
3,756,911	+		HER17_RS16650	0.41	+0.4
3,756,912	-		HER17_RS16650	0.42	+1.0