Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15340

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,434,871	+		HER17_RS15330	0.44	+0.7
3,434,871	+		HER17_RS15330	0.44	+0.2
3,434,871	+		HER17_RS15330	0.44	+0.5
3,434,871	+		HER17_RS15330	0.44	+0.4
3,434,872	-		HER17_RS15330	0.45	+0.0
3,434,874	+		HER17_RS15330	0.45	-0.4
3,434,874	+		HER17_RS15330	0.45	-1.7
3,434,874	+		HER17_RS15330	0.45	-0.1
3,434,875	-		HER17_RS15330	0.45	+0.2
3,434,875	-		HER17_RS15330	0.45	-0.4
3,434,945	-		HER17_RS15330	0.56	-0.2
3,434,949	+		HER17_RS15330	0.57	+0.6
3,435,066	+		HER17_RS15330	0.76	+0.4
3,435,067	-		HER17_RS15330	0.76	-1.0
3,435,067	-		HER17_RS15330	0.76	+0.5
3,435,105	-		HER17_RS15330	0.82	+0.3
3,435,200	+				-0.4
3,435,201	-				-0.4
3,435,201	-				+0.7
3,435,201	-				+0.8
3,435,265	+				-0.1
3,435,265	+				-0.0
3,435,266	-				-0.0
3,435,266	-				+1.0
3,435,271	-				+1.1
3,435,271	-				-0.2
3,435,287	-				+1.0
3,435,287	-				+0.1
3,435,288	+				+0.8
3,435,288	+				-0.1
3,435,288	+				+0.3
3,435,289	-				+2.7
3,435,289	-				-0.0
3,435,320	+				+0.2
3,435,320	+				+0.5
3,435,321	-				+0.7
3,435,394	+				-0.4
3,435,395	-				-0.4
3,435,529	-		HER17_RS15335	0.67	+0.8
3,435,539	-		HER17_RS15335	0.71	+0.9
3,435,539	-		HER17_RS15335	0.71	-0.1
3,435,541	-		HER17_RS15335	0.72	+0.7
3,435,541	-		HER17_RS15335	0.72	-0.4
3,435,593	+				+0.1
3,435,662	-				-0.2
3,435,726	+				+0.1
3,435,726	+				-0.1
3,435,726	+				-0.4
3,435,727	-				+0.7
3,435,733	+				+0.4
3,435,734	-				-0.0
3,435,818	+				-0.3
3,435,889	-				-0.1
3,436,045	+				+0.3
3,436,045	+				-0.6
3,436,045	+				-0.0
3,436,046	-				-0.7
3,436,130	+		HER17_RS15340	0.10	-0.2
3,436,131	-		HER17_RS15340	0.10	+0.7
3,436,141	-		HER17_RS15340	0.10	+0.6
3,436,180	+		HER17_RS15340	0.12	+1.3
3,436,248	-		HER17_RS15340	0.14	+0.2
3,436,280	+		HER17_RS15340	0.15	-0.2
3,436,280	+		HER17_RS15340	0.15	+0.4
3,436,281	-		HER17_RS15340	0.15	-0.9
3,436,281	-		HER17_RS15340	0.15	+0.6
3,436,283	-		HER17_RS15340	0.15	-0.7
3,436,283	-		HER17_RS15340	0.15	+1.6
3,436,299	+		HER17_RS15340	0.16	+0.4
3,436,304	-		HER17_RS15340	0.16	+0.0
3,436,375	+		HER17_RS15340	0.18	-0.3
3,436,375	+		HER17_RS15340	0.18	+1.5
3,436,375	+		HER17_RS15340	0.18	+0.8
3,436,375	+		HER17_RS15340	0.18	+0.3
3,436,376	-		HER17_RS15340	0.18	-1.7
3,436,376	-		HER17_RS15340	0.18	+0.5
3,436,376	-		HER17_RS15340	0.18	+1.7
3,436,376	-		HER17_RS15340	0.18	+0.7
3,436,376	-		HER17_RS15340	0.18	-0.7
3,436,382	+		HER17_RS15340	0.19	-1.7
3,436,382	+		HER17_RS15340	0.19	-0.0
3,436,420	+		HER17_RS15340	0.20	+0.9
3,436,421	-		HER17_RS15340	0.20	-0.4
3,436,441	+		HER17_RS15340	0.21	-0.0
3,436,441	+		HER17_RS15340	0.21	-0.4
3,436,442	-		HER17_RS15340	0.21	-0.0
3,436,452	+		HER17_RS15340	0.21	-1.4
3,436,453	-		HER17_RS15340	0.21	+0.3
3,436,607	+		HER17_RS15340	0.26	+0.1
3,436,607	+		HER17_RS15340	0.26	-0.1
3,436,608	-		HER17_RS15340	0.26	+0.3
3,436,609	+		HER17_RS15340	0.26	+0.4
3,436,712	+		HER17_RS15340	0.30	-0.3
3,436,712	+		HER17_RS15340	0.30	+0.5
3,436,713	-		HER17_RS15340	0.30	+1.1
3,436,713	-		HER17_RS15340	0.30	-0.7
3,436,713	-		HER17_RS15340	0.30	+1.4
3,436,837	+		HER17_RS15340	0.34	+0.1
3,436,837	+		HER17_RS15340	0.34	-1.7
3,436,889	-		HER17_RS15340	0.36	+1.0
3,436,889	-		HER17_RS15340	0.36	+0.6
3,436,913	+		HER17_RS15340	0.37	-0.1
3,436,917	-		HER17_RS15340	0.37	+0.2
3,436,945	+		HER17_RS15340	0.38	-0.5
3,436,946	-		HER17_RS15340	0.38	+0.8
3,436,973	+		HER17_RS15340	0.39	-0.2
3,436,973	+		HER17_RS15340	0.39	+0.1
3,436,976	-		HER17_RS15340	0.39	-0.3
3,437,009	+		HER17_RS15340	0.40	+1.1
3,437,009	+		HER17_RS15340	0.40	+0.0
3,437,009	+		HER17_RS15340	0.40	-0.4
3,437,009	+		HER17_RS15340	0.40	-1.9
3,437,009	+		HER17_RS15340	0.40	-0.4
3,437,012	-		HER17_RS15340	0.40	-0.3
3,437,056	-		HER17_RS15340	0.41	-0.1
3,437,056	-		HER17_RS15340	0.41	+1.4
3,437,075	+		HER17_RS15340	0.42	-0.4
3,437,114	+		HER17_RS15340	0.43	+0.3
3,437,115	-		HER17_RS15340	0.43	-0.2
3,437,210	+		HER17_RS15340	0.47	-0.2
3,437,210	+		HER17_RS15340	0.47	-1.5
3,437,210	+		HER17_RS15340	0.47	+2.7
3,437,211	-		HER17_RS15340	0.47	-0.1
3,437,211	-		HER17_RS15340	0.47	-0.2
3,437,211	-		HER17_RS15340	0.47	-0.1
3,437,211	-		HER17_RS15340	0.47	-0.0
3,437,211	-		HER17_RS15340	0.47	-0.6
3,437,211	-		HER17_RS15340	0.47	-1.2
3,437,211	-		HER17_RS15340	0.47	+0.9
3,437,212	+		HER17_RS15340	0.47	+0.4
3,437,212	+		HER17_RS15340	0.47	+0.4
3,437,246	+		HER17_RS15340	0.48	-0.6
3,437,246	+		HER17_RS15340	0.48	-0.0
3,437,246	+		HER17_RS15340	0.48	+1.3
3,437,246	+		HER17_RS15340	0.48	+0.5
3,437,247	-		HER17_RS15340	0.48	+0.3
3,437,247	-		HER17_RS15340	0.48	+0.4
3,437,247	-		HER17_RS15340	0.48	-0.1
3,437,387	+		HER17_RS15340	0.53	-0.7
3,437,388	-		HER17_RS15340	0.53	+0.1
3,437,388	-		HER17_RS15340	0.53	-1.0
3,437,494	+		HER17_RS15340	0.56	-0.7
3,437,494	+		HER17_RS15340	0.56	+0.4
3,437,495	-		HER17_RS15340	0.56	-0.2
3,437,495	-		HER17_RS15340	0.56	-0.2
3,437,495	-		HER17_RS15340	0.56	-0.4
3,437,498	+		HER17_RS15340	0.56	-0.2
3,437,499	-		HER17_RS15340	0.56	+0.3
3,437,499	-		HER17_RS15340	0.56	-0.1
3,437,499	-		HER17_RS15340	0.56	-0.9
3,437,499	-		HER17_RS15340	0.56	-0.3
3,437,563	+		HER17_RS15340	0.59	-0.4
3,437,805	+		HER17_RS15340	0.67	+0.3
3,437,952	-		HER17_RS15340	0.72	-0.3
3,438,005	+		HER17_RS15340	0.74	-0.4
3,438,005	+		HER17_RS15340	0.74	-0.0
3,438,006	-		HER17_RS15340	0.74	-0.4
3,438,021	-		HER17_RS15340	0.74	-0.7
3,438,021	-		HER17_RS15340	0.74	+0.2
3,438,092	+		HER17_RS15340	0.76	-0.4
3,438,120	-		HER17_RS15340	0.77	+0.8
3,438,120	-		HER17_RS15340	0.77	+0.3
3,438,127	+		HER17_RS15340	0.78	-0.3
3,438,170	+		HER17_RS15340	0.79	-0.5
3,438,170	+		HER17_RS15340	0.79	+0.5
3,438,171	-		HER17_RS15340	0.79	-0.1
3,438,171	-		HER17_RS15340	0.79	+0.1
3,438,171	-		HER17_RS15340	0.79	+0.1
3,438,179	+		HER17_RS15340	0.79	+0.6
3,438,181	+		HER17_RS15340	0.79	+0.1
3,438,182	-		HER17_RS15340	0.79	-1.7
3,438,201	-		HER17_RS15340	0.80	+0.1
3,438,201	-		HER17_RS15340	0.80	-0.0
3,438,201	-		HER17_RS15340	0.80	-0.1
3,438,221	+		HER17_RS15340	0.81	+0.4
3,438,221	+		HER17_RS15340	0.81	-0.2
3,438,349	+		HER17_RS15340	0.85	-0.1
3,438,350	-		HER17_RS15340	0.85	+1.9
3,438,356	-		HER17_RS15340	0.85	+0.6
3,438,389	+		HER17_RS15340	0.86	-0.3
3,438,390	-		HER17_RS15340	0.87	+0.0
3,438,390	-		HER17_RS15340	0.87	+1.5
3,438,390	-		HER17_RS15340	0.87	-0.9
3,438,468	+		HER17_RS15340	0.89	-0.7
3,438,469	-		HER17_RS15340	0.89	+0.8
3,438,628	+				-1.4
3,438,689	-				+0.1
3,438,785	+				-0.2
3,438,785	+				-0.3
3,438,785	+				+0.4
3,438,785	+				-0.4
3,438,786	-				+0.4
3,438,786	-				+0.8
3,438,788	+				-0.3
3,438,789	-				-1.2
3,438,789	-				+0.0
3,438,836	-				-0.1
3,438,836	-				-0.6
3,438,836	-				-0.4
3,438,838	+				+1.0
3,438,839	-				-2.2
3,438,839	-				-1.1
3,438,841	+				-1.3
3,438,841	+				+0.9
3,438,841	+				+0.3
3,438,841	+				-0.4
3,438,842	-				-2.0
3,438,842	-				-0.4
3,438,842	-				-0.7
3,438,855	+				-0.2
3,438,855	+				-0.4
3,438,856	-				+0.1
3,438,877	-				+0.2
3,438,895	+				+0.1
3,438,897	+				+0.6
3,438,898	-				-1.8
3,438,898	-				-0.4
3,438,913	+				-0.4
3,438,914	-				+0.6
3,438,915	+				+0.0
3,438,915	+				+0.6
3,438,915	+				+0.2
3,438,916	-				+0.4
3,438,916	-				-0.4
3,438,916	-				+0.6
3,438,916	-				-0.4
3,438,916	-				+0.5
3,438,916	-				-0.3
3,438,919	+				+1.0
3,438,919	+				+1.3
3,438,945	+				-2.1
3,438,945	+				+0.6
3,438,946	-				-0.3
3,438,946	-				-0.6
3,438,946	-				-1.0
3,438,946	-				-0.1
3,438,946	-				-0.0
3,438,946	-				+0.9
3,438,946	-				+0.9
3,438,946	-				-0.3
3,438,946	-				+0.1
3,438,960	+				-0.5
3,438,961	-				+1.1
3,438,972	-				+1.0
3,438,972	-				+1.3
3,439,071	-				-0.1
3,439,076	+				-0.0
3,439,077	-				-1.2
3,439,079	+				-0.8
3,439,079	+				-0.7
3,439,080	-				-0.2
3,439,080	-				+0.3
3,439,080	-				+1.0
3,439,142	+				+0.3
3,439,142	+				+0.6
3,439,142	+				+0.8
3,439,142	+				+0.2
3,439,142	+				-0.3
3,439,142	+				+0.3
3,439,142	+				+0.8
3,439,142	+				-0.9
3,439,142	+				+0.2
3,439,142	+				+0.6
3,439,143	-				-0.9
3,439,143	-				+0.3
3,439,143	-				-0.8
3,439,143	-				+0.9
3,439,143	-				+0.6
3,439,143	-				+0.6
3,439,143	-				-0.6
3,439,169	+		HER17_RS15345	0.10	+0.1
3,439,169	+		HER17_RS15345	0.10	-0.3
3,439,256	-		HER17_RS15345	0.13	+0.4
3,439,366	+		HER17_RS15345	0.17	-0.9
3,439,366	+		HER17_RS15345	0.17	+0.5
3,439,366	+		HER17_RS15345	0.17	-0.4
3,439,367	-		HER17_RS15345	0.17	+0.3
3,439,367	-		HER17_RS15345	0.17	+0.5
3,439,367	-		HER17_RS15345	0.17	-0.3
3,439,367	-		HER17_RS15345	0.17	+1.1
3,439,531	-		HER17_RS15345	0.23	+0.1
3,439,531	-		HER17_RS15345	0.23	-1.3
3,439,536	+		HER17_RS15345	0.24	-0.0
3,439,536	+		HER17_RS15345	0.24	-1.2
3,439,536	+		HER17_RS15345	0.24	-0.7
3,439,536	+		HER17_RS15345	0.24	+0.7
3,439,536	+		HER17_RS15345	0.24	-1.2
3,439,536	+		HER17_RS15345	0.24	+0.1
3,439,537	-		HER17_RS15345	0.24	-0.1
3,439,652	+		HER17_RS15345	0.28	-0.3
3,439,705	+		HER17_RS15345	0.30	-2.7