Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08905

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,953,890	+		HER17_RS08900	0.39	+0.4
1,953,890	+		HER17_RS08900	0.39	-0.5
1,953,891	-		HER17_RS08900	0.39	-0.7
1,953,897	+		HER17_RS08900	0.40	+0.4
1,953,898	-		HER17_RS08900	0.40	+2.2
1,953,901	-		HER17_RS08900	0.40	+0.8
1,954,022	-		HER17_RS08900	0.51	-0.1
1,954,025	-		HER17_RS08900	0.51	+1.2
1,954,025	-		HER17_RS08900	0.51	-0.1
1,954,123	+		HER17_RS08900	0.60	+1.3
1,954,124	-		HER17_RS08900	0.60	+0.4
1,954,184	+		HER17_RS08900	0.66	-0.5
1,954,184	+		HER17_RS08900	0.66	-0.7
1,954,298	+		HER17_RS08900	0.76	-0.1
1,954,325	+		HER17_RS08900	0.78	-0.1
1,954,325	+		HER17_RS08900	0.78	-0.7
1,954,325	+		HER17_RS08900	0.78	+0.6
1,954,325	+		HER17_RS08900	0.78	+0.1
1,954,325	+		HER17_RS08900	0.78	-0.0
1,954,326	-		HER17_RS08900	0.78	+0.8
1,954,326	-		HER17_RS08900	0.78	+0.3
1,954,326	-		HER17_RS08900	0.78	-0.1
1,954,326	-		HER17_RS08900	0.78	-0.0
1,954,326	-		HER17_RS08900	0.78	-0.1
1,954,329	+		HER17_RS08900	0.79	+0.7
1,954,329	+		HER17_RS08900	0.79	-0.4
1,954,330	-		HER17_RS08900	0.79	-0.6
1,954,330	-		HER17_RS08900	0.79	-0.0
1,954,384	-		HER17_RS08900	0.84	-0.0
1,954,387	-		HER17_RS08900	0.84	+0.2
1,954,433	+		HER17_RS08900	0.88	-0.1
1,954,433	+		HER17_RS08900	0.88	-0.4
1,954,433	+		HER17_RS08900	0.88	+0.2
1,954,433	+		HER17_RS08900	0.88	-0.6
1,954,433	+		HER17_RS08900	0.88	-0.5
1,954,433	+		HER17_RS08900	0.88	+0.1
1,954,433	+		HER17_RS08900	0.88	+0.2
1,954,433	+		HER17_RS08900	0.88	+0.6
1,954,434	-		HER17_RS08900	0.88	+0.7
1,954,434	-		HER17_RS08900	0.88	+0.7
1,954,434	-		HER17_RS08900	0.88	-0.6
1,954,434	-		HER17_RS08900	0.88	+0.3
1,954,434	-		HER17_RS08900	0.88	-0.2
1,954,434	-		HER17_RS08900	0.88	+1.0
1,954,434	-		HER17_RS08900	0.88	-0.0
1,954,434	-		HER17_RS08900	0.88	-1.3
1,954,434	-		HER17_RS08900	0.88	+0.2
1,954,434	-		HER17_RS08900	0.88	+0.8
1,954,457	+				+1.0
1,954,500	-				+0.8
1,954,503	-				-0.7
1,954,650	-				-1.4
1,954,650	-				-0.3
1,954,717	-				+0.2
1,954,761	-				+0.8
1,954,793	+				+0.8
1,954,823	+				-0.3
1,954,823	+				+0.3
1,954,823	+				-0.5
1,954,823	+				-1.0
1,954,824	-				+0.0
1,954,842	+				+0.1
1,954,842	+				-0.4
1,954,843	-				+0.1
1,954,862	-				-1.8
1,954,910	+				-0.0
1,954,962	-				-0.6
1,954,965	+				+0.2
1,954,965	+				-0.4
1,954,966	-				-0.4
1,954,966	-				-0.0
1,955,000	+				-1.0
1,955,000	+				-1.2
1,955,001	-				+0.4
1,955,001	-				-1.5
1,955,005	-				-0.4
1,955,081	+				-0.8
1,955,169	-		HER17_RS08905	0.10	-0.2
1,955,169	-		HER17_RS08905	0.10	-0.5
1,955,169	-		HER17_RS08905	0.10	-1.4
1,955,169	-		HER17_RS08905	0.10	+0.6
1,955,178	+		HER17_RS08905	0.10	+1.3
1,955,179	-		HER17_RS08905	0.10	-1.4
1,955,179	-		HER17_RS08905	0.10	+0.3
1,955,180	+		HER17_RS08905	0.10	-0.5
1,955,181	-		HER17_RS08905	0.10	-0.1
1,955,181	-		HER17_RS08905	0.10	-1.2
1,955,181	-		HER17_RS08905	0.10	-2.7
1,955,181	-		HER17_RS08905	0.10	+1.3
1,955,189	+		HER17_RS08905	0.11	-0.3
1,955,189	+		HER17_RS08905	0.11	-0.4
1,955,189	+		HER17_RS08905	0.11	-0.4
1,955,190	-		HER17_RS08905	0.11	-0.5
1,955,243	+		HER17_RS08905	0.12	-0.4
1,955,255	+		HER17_RS08905	0.13	-0.4
1,955,255	+		HER17_RS08905	0.13	-2.5
1,955,255	+		HER17_RS08905	0.13	-0.8
1,955,256	-		HER17_RS08905	0.13	-0.4
1,955,281	-		HER17_RS08905	0.14	+0.3
1,955,370	+		HER17_RS08905	0.17	-1.1
1,955,370	+		HER17_RS08905	0.17	-1.0
1,955,371	-		HER17_RS08905	0.17	-0.6
1,955,371	-		HER17_RS08905	0.17	-0.2
1,955,498	+		HER17_RS08905	0.21	-0.0
1,955,502	+		HER17_RS08905	0.21	+0.1
1,955,503	-		HER17_RS08905	0.21	-0.7
1,955,508	-		HER17_RS08905	0.21	-0.2
1,955,621	+		HER17_RS08905	0.25	-1.7
1,955,672	+		HER17_RS08905	0.26	+0.3
1,955,736	+		HER17_RS08905	0.29	+0.3
1,955,736	+		HER17_RS08905	0.29	-1.7
1,955,737	-		HER17_RS08905	0.29	-0.6
1,955,816	+		HER17_RS08905	0.31	+0.6
1,955,816	+		HER17_RS08905	0.31	-1.0
1,955,816	+		HER17_RS08905	0.31	-0.7
1,955,816	+		HER17_RS08905	0.31	-0.2
1,955,816	+		HER17_RS08905	0.31	-1.0
1,955,817	-		HER17_RS08905	0.31	-0.8
1,955,824	+		HER17_RS08905	0.31	-0.0
1,955,825	-		HER17_RS08905	0.31	-0.6
1,955,843	+		HER17_RS08905	0.32	+0.8
1,955,909	+		HER17_RS08905	0.34	-0.2
1,956,030	-		HER17_RS08905	0.38	-1.0
1,956,054	-		HER17_RS08905	0.39	-0.5
1,956,057	+		HER17_RS08905	0.39	-0.0
1,956,336	+		HER17_RS08905	0.48	-1.2
1,956,336	+		HER17_RS08905	0.48	-0.7
1,956,336	+		HER17_RS08905	0.48	+0.2
1,956,337	-		HER17_RS08905	0.48	+0.4
1,956,337	-		HER17_RS08905	0.48	-0.7
1,956,366	-		HER17_RS08905	0.49	-0.5
1,956,384	+		HER17_RS08905	0.50	+0.3
1,956,414	+		HER17_RS08905	0.51	+0.1
1,956,415	-		HER17_RS08905	0.51	+2.1
1,956,464	+		HER17_RS08905	0.52	-1.2
1,956,497	-		HER17_RS08905	0.54	-1.0
1,956,497	-		HER17_RS08905	0.54	+0.1
1,956,596	+		HER17_RS08905	0.57	-0.0
1,956,596	+		HER17_RS08905	0.57	+0.0
1,956,597	-		HER17_RS08905	0.57	-1.0
1,956,672	-		HER17_RS08905	0.59	-0.2
1,956,672	-		HER17_RS08905	0.59	-0.9
1,956,715	+		HER17_RS08905	0.61	-0.6
1,956,797	+		HER17_RS08905	0.63	-0.0
1,956,815	+		HER17_RS08905	0.64	-0.7
1,956,840	+		HER17_RS08905	0.65	-0.6
1,956,840	+		HER17_RS08905	0.65	+0.4
1,956,890	+		HER17_RS08905	0.66	+0.3
1,956,890	+		HER17_RS08905	0.66	+0.6
1,956,961	-		HER17_RS08905	0.69	+0.6
1,956,973	-		HER17_RS08905	0.69	-0.2
1,956,993	+		HER17_RS08905	0.70	-0.4
1,956,993	+		HER17_RS08905	0.70	+0.6
1,957,017	+		HER17_RS08905	0.71	-0.2
1,957,164	-		HER17_RS08905	0.75	-0.2
1,957,224	+		HER17_RS08905	0.77	-0.5
1,957,224	+		HER17_RS08905	0.77	-1.0
1,957,224	+		HER17_RS08905	0.77	-1.3
1,957,224	+		HER17_RS08905	0.77	-1.5
1,957,225	-		HER17_RS08905	0.77	-0.6
1,957,225	-		HER17_RS08905	0.77	-1.4
1,957,225	-		HER17_RS08905	0.77	-0.6
1,957,225	-		HER17_RS08905	0.77	+0.5
1,957,225	-		HER17_RS08905	0.77	-0.4
1,957,225	-		HER17_RS08905	0.77	-0.7
1,957,231	+		HER17_RS08905	0.78	-1.5
1,957,257	+		HER17_RS08905	0.78	-0.2
1,957,257	+		HER17_RS08905	0.78	-0.2
1,957,258	-		HER17_RS08905	0.78	-0.9
1,957,258	-		HER17_RS08905	0.78	+0.8
1,957,260	+		HER17_RS08905	0.78	+0.1
1,957,261	-		HER17_RS08905	0.79	-0.5
1,957,261	-		HER17_RS08905	0.79	-1.6
1,957,325	-		HER17_RS08905	0.81	-0.1
1,957,362	-		HER17_RS08905	0.82	-1.7
1,957,362	-		HER17_RS08905	0.82	+0.5
1,957,372	+		HER17_RS08905	0.82	-0.8
1,957,372	+		HER17_RS08905	0.82	-0.7
1,957,373	-		HER17_RS08905	0.82	-0.3
1,957,602	+		HER17_RS08905	0.90	+0.5
1,957,603	-		HER17_RS08905	0.90	+0.6
1,957,732	-				-0.9
1,957,773	+				-0.1
1,957,773	+				-1.2
1,957,774	-				+0.4
1,957,911	-				-0.0
1,957,972	+		HER17_RS08910	0.13	-1.2
1,957,972	+		HER17_RS08910	0.13	+0.2
1,957,973	-		HER17_RS08910	0.14	+0.3
1,957,985	-		HER17_RS08910	0.17	-0.1
1,957,999	+		HER17_RS08910	0.20	-0.4
1,958,000	-		HER17_RS08910	0.20	+0.5
1,958,246	-		HER17_RS08910	0.79	-0.5
1,958,323	+				+0.2
1,958,331	-				-0.2
1,958,339	-				-0.2
1,958,480	+		HER17_RS08915	0.19	-0.4
1,958,480	+		HER17_RS08915	0.19	-0.2
1,958,481	-		HER17_RS08915	0.19	+0.3
1,958,481	-		HER17_RS08915	0.19	+0.2
1,958,520	+		HER17_RS08915	0.29	-0.6
1,958,521	-		HER17_RS08915	0.29	+0.2
1,958,521	-		HER17_RS08915	0.29	-1.0
1,958,521	-		HER17_RS08915	0.29	-0.4
1,958,521	-		HER17_RS08915	0.29	-0.6
1,958,521	-		HER17_RS08915	0.29	-0.1
1,958,521	-		HER17_RS08915	0.29	-0.2
1,958,521	-		HER17_RS08915	0.29	-0.4
1,958,523	+		HER17_RS08915	0.29	-0.5
1,958,563	+		HER17_RS08915	0.39	-0.4
1,958,572	+		HER17_RS08915	0.42	+0.3
1,958,610	+		HER17_RS08915	0.51	+0.4
1,958,610	+		HER17_RS08915	0.51	+0.5
1,958,610	+		HER17_RS08915	0.51	-1.6
1,958,611	-		HER17_RS08915	0.51	-0.4
1,958,666	-		HER17_RS08915	0.65	-0.5
1,958,679	-		HER17_RS08915	0.68	+0.4
1,958,679	-		HER17_RS08915	0.68	+0.2
1,958,679	-		HER17_RS08915	0.68	+0.0
1,958,679	-		HER17_RS08915	0.68	+1.7
1,958,679	-		HER17_RS08915	0.68	-1.6
1,958,689	+		HER17_RS08915	0.71	+0.6
1,958,690	-		HER17_RS08915	0.71	-0.0
1,958,690	-		HER17_RS08915	0.71	-2.3
1,958,690	-		HER17_RS08915	0.71	+0.8
1,958,726	-		HER17_RS08915	0.80	-0.1
1,958,727	+		HER17_RS08915	0.80	-0.7
1,958,728	-		HER17_RS08915	0.80	+0.4
1,958,762	-		HER17_RS08915	0.89	-1.2
1,958,762	-		HER17_RS08915	0.89	-0.7
1,958,763	+		HER17_RS08915	0.89	-2.1
1,958,846	-				-0.2