Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02215 and HER17_RS02220 are separated by 67 nucleotides HER17_RS02220 and HER17_RS02225 are separated by 23 nucleotides HER17_RS02225 and HER17_RS02230 are separated by 128 nucleotides
HER17_RS02215: HER17_RS02215 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 492,702 to 493,991
_RS02215
HER17_RS02220: HER17_RS02220 - methionyl-tRNA formyltransferase, at 494,059 to 495,006
_RS02220
HER17_RS02225: HER17_RS02225 - peptide deformylase, at 495,030 to 495,542
_RS02225
HER17_RS02230: HER17_RS02230 - DNA-protecting protein DprA, at 495,671 to 496,792
_RS02230
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.095 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.202 kb on + strand, within HER17_RS02215 at 493.203 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.378 kb on + strand, within HER17_RS02215 at 493.413 kb on + strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.464 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.629 kb on + strand, within HER17_RS02215 at 493.630 kb on - strand, within HER17_RS02215 at 493.683 kb on + strand, within HER17_RS02215 at 493.721 kb on + strand, within HER17_RS02215 at 493.723 kb on + strand, within HER17_RS02215 at 493.736 kb on - strand, within HER17_RS02215 at 493.756 kb on + strand, within HER17_RS02215 at 493.757 kb on - strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.790 kb on + strand, within HER17_RS02215 at 493.791 kb on - strand, within HER17_RS02215 at 493.808 kb on + strand, within HER17_RS02215 at 493.836 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.905 kb on + strand at 493.905 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.908 kb on + strand at 493.909 kb on - strand at 493.909 kb on - strand at 493.964 kb on + strand at 493.965 kb on - strand at 493.965 kb on - strand at 493.971 kb on + strand at 493.972 kb on - strand at 493.972 kb on - strand at 493.978 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.013 kb on + strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.027 kb on + strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.060 kb on + strand at 494.060 kb on + strand at 494.061 kb on - strand at 494.070 kb on + strand at 494.071 kb on - strand at 495.093 kb on - strand, within HER17_RS02225 at 495.093 kb on - strand, within HER17_RS02225 at 495.559 kb on - strand at 495.641 kb on + strand at 495.641 kb on + strand at 495.659 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.698 kb on - strand at 495.709 kb on - strand at 495.754 kb on + strand at 495.817 kb on - strand, within HER17_RS02230 at 495.817 kb on - strand, within HER17_RS02230 at 495.817 kb on - strand, within HER17_RS02230 at 495.829 kb on + strand, within HER17_RS02230 at 495.830 kb on - strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.841 kb on + strand, within HER17_RS02230 at 495.841 kb on + strand, within HER17_RS02230 at 495.842 kb on - strand, within HER17_RS02230 at 495.876 kb on - strand, within HER17_RS02230 at 495.889 kb on + strand, within HER17_RS02230 at 495.889 kb on + strand, within HER17_RS02230 at 495.999 kb on + strand, within HER17_RS02230 at 496.000 kb on - strand, within HER17_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 493,095 + HER17_RS02215 0.30 +0.1 493,158 + HER17_RS02215 0.35 -1.2 493,158 + HER17_RS02215 0.35 -0.2 493,159 - HER17_RS02215 0.35 -0.6 493,159 - HER17_RS02215 0.35 +0.1 493,159 - HER17_RS02215 0.35 -2.0 493,159 - HER17_RS02215 0.35 +0.1 493,159 - HER17_RS02215 0.35 +0.1 493,174 - HER17_RS02215 0.37 -0.9 493,174 - HER17_RS02215 0.37 -0.2 493,202 + HER17_RS02215 0.39 -0.2 493,203 - HER17_RS02215 0.39 +0.1 493,303 - HER17_RS02215 0.47 -1.6 493,303 - HER17_RS02215 0.47 -0.5 493,303 - HER17_RS02215 0.47 +0.6 493,378 + HER17_RS02215 0.52 +0.8 493,413 + HER17_RS02215 0.55 -0.2 493,414 - HER17_RS02215 0.55 -0.7 493,414 - HER17_RS02215 0.55 -0.4 493,416 + HER17_RS02215 0.55 +0.6 493,416 + HER17_RS02215 0.55 +0.4 493,417 - HER17_RS02215 0.55 +0.0 493,417 - HER17_RS02215 0.55 -0.3 493,429 + HER17_RS02215 0.56 -0.5 493,429 + HER17_RS02215 0.56 -0.3 493,430 - HER17_RS02215 0.56 -0.9 493,430 - HER17_RS02215 0.56 +0.3 493,430 - HER17_RS02215 0.56 +0.1 493,464 + HER17_RS02215 0.59 -0.0 493,502 + HER17_RS02215 0.62 -0.1 493,502 + HER17_RS02215 0.62 +0.5 493,502 + HER17_RS02215 0.62 +0.7 493,503 - HER17_RS02215 0.62 -0.5 493,503 - HER17_RS02215 0.62 +0.2 493,626 + HER17_RS02215 0.72 +0.1 493,626 + HER17_RS02215 0.72 -0.4 493,629 + HER17_RS02215 0.72 -0.6 493,630 - HER17_RS02215 0.72 +1.0 493,683 + HER17_RS02215 0.76 -0.2 493,721 + HER17_RS02215 0.79 -0.9 493,723 + HER17_RS02215 0.79 +0.9 493,736 - HER17_RS02215 0.80 -0.4 493,756 + HER17_RS02215 0.82 +1.6 493,757 - HER17_RS02215 0.82 +0.3 493,775 + HER17_RS02215 0.83 +0.8 493,775 + HER17_RS02215 0.83 -2.4 493,775 + HER17_RS02215 0.83 -0.1 493,790 + HER17_RS02215 0.84 +0.4 493,791 - HER17_RS02215 0.84 +0.2 493,808 + HER17_RS02215 0.86 +0.2 493,836 + HER17_RS02215 0.88 +1.0 493,839 + HER17_RS02215 0.88 -0.5 493,839 + HER17_RS02215 0.88 +0.3 493,839 + HER17_RS02215 0.88 -1.2 493,905 + +1.4 493,905 + +0.8 493,905 + -0.6 493,906 - +0.1 493,908 + +0.2 493,909 - -1.1 493,909 - -0.3 493,964 + -0.4 493,965 - -0.2 493,965 - -0.3 493,971 + +0.1 493,972 - +0.3 493,972 - -1.3 493,978 + +0.2 494,007 + -0.1 494,007 + -0.4 494,007 + +0.2 494,007 + +0.3 494,007 + +0.8 494,007 + -0.0 494,007 + +0.1 494,007 + +1.0 494,008 - +0.7 494,008 - -2.2 494,008 - +1.0 494,008 - -0.7 494,008 - +0.1 494,009 + -0.4 494,009 + +0.4 494,010 - -0.0 494,010 - +0.5 494,010 - -0.4 494,010 - +0.4 494,010 - -0.2 494,013 + -0.8 494,014 - +1.7 494,014 - -1.5 494,014 - -0.3 494,014 - -0.4 494,027 + -0.6 494,028 - -0.3 494,028 - -0.6 494,029 + +1.7 494,029 + +0.6 494,029 + +0.9 494,029 + +1.2 494,060 + +0.5 494,060 + +0.1 494,061 - -0.8 494,070 + +0.8 494,071 - +1.0 495,093 - HER17_RS02225 0.12 -1.1 495,093 - HER17_RS02225 0.12 -0.1 495,559 - -1.4 495,641 + -0.9 495,641 + -0.4 495,659 + -0.2 495,697 + +0.3 495,697 + -2.6 495,697 + -0.5 495,697 + +1.1 495,698 - +0.4 495,709 - -0.2 495,754 + -0.9 495,817 - HER17_RS02230 0.13 +0.8 495,817 - HER17_RS02230 0.13 -0.1 495,817 - HER17_RS02230 0.13 -0.8 495,829 + HER17_RS02230 0.14 -0.2 495,830 - HER17_RS02230 0.14 +0.1 495,833 + HER17_RS02230 0.14 -0.2 495,833 + HER17_RS02230 0.14 +0.2 495,833 + HER17_RS02230 0.14 +2.7 495,833 + HER17_RS02230 0.14 -0.3 495,833 + HER17_RS02230 0.14 +0.7 495,833 + HER17_RS02230 0.14 +0.5 495,834 - HER17_RS02230 0.15 +0.6 495,834 - HER17_RS02230 0.15 +0.5 495,834 - HER17_RS02230 0.15 -0.8 495,834 - HER17_RS02230 0.15 -0.2 495,834 - HER17_RS02230 0.15 -0.2 495,841 + HER17_RS02230 0.15 -1.2 495,841 + HER17_RS02230 0.15 -0.3 495,842 - HER17_RS02230 0.15 -0.3 495,876 - HER17_RS02230 0.18 -0.0 495,889 + HER17_RS02230 0.19 -0.2 495,889 + HER17_RS02230 0.19 -0.3 495,999 + HER17_RS02230 0.29 +0.3 496,000 - HER17_RS02230 0.29 +0.6
Or see this region's nucleotide sequence