Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21350

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
4,782,720	+		HER17_RS21345	0.18	+0.4
4,782,726	+		HER17_RS21345	0.18	+0.5
4,782,726	+		HER17_RS21345	0.18	-0.3
4,782,726	+		HER17_RS21345	0.18	-1.5
4,782,726	+		HER17_RS21345	0.18	+0.7
4,782,726	+		HER17_RS21345	0.18	+0.9
4,782,727	-		HER17_RS21345	0.18	+1.1
4,782,727	-		HER17_RS21345	0.18	-3.1
4,782,727	-		HER17_RS21345	0.18	+0.3
4,782,741	+		HER17_RS21345	0.20	-0.1
4,782,742	-		HER17_RS21345	0.20	+1.0
4,782,793	+		HER17_RS21345	0.25	+0.4
4,782,794	-		HER17_RS21345	0.25	-2.0
4,782,799	+		HER17_RS21345	0.26	+0.4
4,782,800	-		HER17_RS21345	0.26	-1.4
4,782,818	+		HER17_RS21345	0.28	-0.1
4,782,908	+		HER17_RS21345	0.37	-0.1
4,782,909	-		HER17_RS21345	0.38	+0.7
4,782,969	+		HER17_RS21345	0.44	-0.0
4,782,970	-		HER17_RS21345	0.44	+1.0
4,782,970	-		HER17_RS21345	0.44	+0.4
4,782,970	-		HER17_RS21345	0.44	-0.9
4,782,970	-		HER17_RS21345	0.44	-1.3
4,783,008	-		HER17_RS21345	0.48	-0.3
4,783,076	+		HER17_RS21345	0.55	+0.1
4,783,130	+		HER17_RS21345	0.61	+1.4
4,783,130	+		HER17_RS21345	0.61	+2.2
4,783,201	+		HER17_RS21345	0.68	+0.9
4,783,302	-		HER17_RS21345	0.79	-0.5
4,783,307	-		HER17_RS21345	0.79	+0.6
4,783,394	-		HER17_RS21345	0.88	+0.7
4,783,394	-		HER17_RS21345	0.88	+1.4
4,783,433	+				-1.3
4,783,458	+				-1.6
4,783,496	+				+0.4
4,783,496	+				-2.1
4,783,497	-				+1.1
4,783,497	-				-0.1
4,783,509	+				-1.8
4,783,509	+				-2.1
4,783,509	+				+0.1
4,783,509	+				-0.9
4,783,509	+				-0.1
4,783,509	+				-1.7
4,783,509	+				-0.1
4,783,509	+				+1.0
4,783,510	-				-0.5
4,783,510	-				+0.7
4,783,541	+				-0.6
4,783,541	+				+0.7
4,783,542	-				-1.3
4,783,559	-				-0.2
4,783,567	+				-0.4
4,783,594	+				+0.4
4,783,594	+				-0.4
4,783,594	+				-0.8
4,783,595	-				+0.1
4,783,600	+				+0.1
4,783,600	+				+1.6
4,783,601	-				-0.1
4,783,601	-				-2.3
4,783,601	-				+1.0
4,783,602	+				-1.2
4,783,602	+				+0.4
4,783,602	+				-0.2
4,783,602	+				+0.6
4,783,603	-				-1.1
4,783,603	-				-2.9
4,783,603	-				+1.0
4,783,603	-				+0.1
4,783,603	-				+0.6
4,783,605	+				+1.0
4,783,654	+				+1.2
4,783,655	-				-2.0
4,783,655	-				+1.6
4,783,655	-				-0.5
4,783,655	-				-2.2
4,783,658	+				+0.7
4,783,658	+				-0.2
4,783,658	+				+0.1
4,783,658	+				+0.3
4,783,658	+				+1.0
4,783,659	-				+1.2
4,783,659	-				+0.4
4,783,711	+				-0.8
4,783,712	-				+0.0
4,783,722	+				-0.5
4,783,722	+				-0.9
4,783,722	+				-3.4
4,783,722	+				+1.6
4,783,723	-				+0.5
4,783,723	-				-1.7
4,783,723	-				-0.1
4,783,732	-				+0.2
4,783,767	+				+0.7
4,783,801	-				+1.0
4,783,801	-				-0.6
4,783,801	-				+1.4
4,783,852	+		HER17_RS21350	0.10	+0.1
4,783,853	-		HER17_RS21350	0.10	+0.8
4,783,985	-		HER17_RS21350	0.19	-1.8
4,783,985	-		HER17_RS21350	0.19	-1.3
4,783,987	+		HER17_RS21350	0.19	-0.8
4,783,987	+		HER17_RS21350	0.19	-0.2
4,783,987	+		HER17_RS21350	0.19	-0.5
4,783,987	+		HER17_RS21350	0.19	-0.1
4,783,988	-		HER17_RS21350	0.19	+1.6
4,783,988	-		HER17_RS21350	0.19	+0.4
4,783,997	+		HER17_RS21350	0.19	+0.9
4,783,997	+		HER17_RS21350	0.19	-0.1
4,783,997	+		HER17_RS21350	0.19	-0.5
4,783,997	+		HER17_RS21350	0.19	+0.3
4,783,998	-		HER17_RS21350	0.19	+2.9
4,783,998	-		HER17_RS21350	0.19	+0.9
4,784,017	+		HER17_RS21350	0.20	-3.1
4,784,018	-		HER17_RS21350	0.21	-0.1
4,784,070	-		HER17_RS21350	0.24	-0.2
4,784,070	-		HER17_RS21350	0.24	-1.2
4,784,070	-		HER17_RS21350	0.24	-0.4
4,784,070	-		HER17_RS21350	0.24	+2.6
4,784,107	+		HER17_RS21350	0.26	-2.5
4,784,108	-		HER17_RS21350	0.26	+1.1
4,784,112	+		HER17_RS21350	0.26	+0.4
4,784,190	-		HER17_RS21350	0.31	+0.1
4,784,190	-		HER17_RS21350	0.31	-0.6
4,784,216	-		HER17_RS21350	0.33	-2.0
4,784,239	+		HER17_RS21350	0.34	-1.1
4,784,239	+		HER17_RS21350	0.34	+0.4
4,784,240	-		HER17_RS21350	0.34	+0.1
4,784,287	+		HER17_RS21350	0.37	-0.3
4,784,304	+		HER17_RS21350	0.38	+0.0
4,784,305	-		HER17_RS21350	0.38	-0.2
4,784,312	-		HER17_RS21350	0.39	-0.5
4,784,350	+		HER17_RS21350	0.41	+0.5
4,784,359	+		HER17_RS21350	0.42	+0.4
4,784,360	-		HER17_RS21350	0.42	+0.8
4,784,429	-		HER17_RS21350	0.46	-0.3
4,784,429	-		HER17_RS21350	0.46	+1.3
4,784,429	-		HER17_RS21350	0.46	+0.1
4,784,431	+		HER17_RS21350	0.46	-1.2
4,784,431	+		HER17_RS21350	0.46	+0.5
4,784,480	-		HER17_RS21350	0.49	+1.1
4,784,485	-		HER17_RS21350	0.50	-0.9
4,784,485	-		HER17_RS21350	0.50	+1.1
4,784,485	-		HER17_RS21350	0.50	+0.9
4,784,537	+		HER17_RS21350	0.53	-0.9
4,784,537	+		HER17_RS21350	0.53	+1.0
4,784,538	-		HER17_RS21350	0.53	+0.8
4,784,540	+		HER17_RS21350	0.53	+0.3
4,784,552	+		HER17_RS21350	0.54	-1.2
4,784,552	+		HER17_RS21350	0.54	-1.4
4,784,552	+		HER17_RS21350	0.54	-2.0
4,784,553	-		HER17_RS21350	0.54	-0.8
4,784,553	-		HER17_RS21350	0.54	-1.1
4,784,553	-		HER17_RS21350	0.54	+0.5
4,784,584	-		HER17_RS21350	0.56	+1.0
4,784,593	-		HER17_RS21350	0.56	+0.2
4,784,627	-		HER17_RS21350	0.59	-2.2
4,784,627	-		HER17_RS21350	0.59	-0.0
4,784,637	+		HER17_RS21350	0.59	+0.2
4,784,637	+		HER17_RS21350	0.59	-1.0
4,784,638	-		HER17_RS21350	0.59	-1.7
4,784,638	-		HER17_RS21350	0.59	+0.1
4,784,638	-		HER17_RS21350	0.59	-0.0
4,784,638	-		HER17_RS21350	0.59	+1.5
4,784,638	-		HER17_RS21350	0.59	+1.0
4,784,641	+		HER17_RS21350	0.59	+1.8
4,784,641	+		HER17_RS21350	0.59	-1.4
4,784,641	+		HER17_RS21350	0.59	+0.5
4,784,642	-		HER17_RS21350	0.59	+0.8
4,784,665	+		HER17_RS21350	0.61	-0.2
4,784,665	+		HER17_RS21350	0.61	+0.3
4,784,666	-		HER17_RS21350	0.61	-1.8
4,784,666	-		HER17_RS21350	0.61	-1.2
4,784,666	-		HER17_RS21350	0.61	+0.6
4,784,692	-		HER17_RS21350	0.63	-0.0
4,784,692	-		HER17_RS21350	0.63	-0.8
4,784,692	-		HER17_RS21350	0.63	-0.0
4,784,711	+		HER17_RS21350	0.64	-0.1
4,784,803	-		HER17_RS21350	0.69	-0.8
4,784,803	-		HER17_RS21350	0.69	+0.9
4,784,803	-		HER17_RS21350	0.69	+0.1
4,784,845	+		HER17_RS21350	0.72	+1.0
4,784,845	+		HER17_RS21350	0.72	+0.6
4,784,846	-		HER17_RS21350	0.72	+0.5
4,784,846	-		HER17_RS21350	0.72	-3.1
4,784,846	-		HER17_RS21350	0.72	+0.7
4,784,846	-		HER17_RS21350	0.72	+0.3
4,784,846	-		HER17_RS21350	0.72	-0.6
4,784,867	-		HER17_RS21350	0.73	-1.6
4,784,867	-		HER17_RS21350	0.73	-0.9
4,784,896	-		HER17_RS21350	0.75	+1.0
4,784,896	-		HER17_RS21350	0.75	+0.5
4,784,929	+		HER17_RS21350	0.77	+1.2
4,784,929	+		HER17_RS21350	0.77	-0.6
4,784,929	+		HER17_RS21350	0.77	-0.0
4,784,929	+		HER17_RS21350	0.77	+0.4
4,784,930	-		HER17_RS21350	0.77	-0.3
4,784,975	+		HER17_RS21350	0.80	-0.3
4,784,975	+		HER17_RS21350	0.80	-0.4
4,784,975	+		HER17_RS21350	0.80	+0.7
4,784,975	+		HER17_RS21350	0.80	-0.6
4,785,010	-		HER17_RS21350	0.82	+0.8
4,785,073	+		HER17_RS21350	0.86	+0.9
4,785,073	+		HER17_RS21350	0.86	+1.0
4,785,143	+				+0.3
4,785,144	-				-0.8
4,785,147	+				+1.5
4,785,148	-				-0.7
4,785,148	-				+0.9
4,785,167	+				-0.6
4,785,167	+				+1.0
4,785,167	+				-0.1
4,785,167	+				-0.1
4,785,167	+				+1.4
4,785,167	+				-0.5
4,785,168	-				+1.5
4,785,168	-				-2.2
4,785,168	-				+1.9
4,785,168	-				-0.6
4,785,168	-				-0.7
4,785,169	+				-1.8
4,785,169	+				-0.3
4,785,169	+				-2.0
4,785,169	+				-0.1
4,785,170	-				+1.5
4,785,171	+				+0.6
4,785,171	+				+0.3
4,785,171	+				+0.3
4,785,172	-				+0.0
4,785,185	+				+0.1
4,785,185	+				+0.7
4,785,190	+				+0.7
4,785,230	+				-1.4
4,785,232	+				+1.3
4,785,259	+				+0.1
4,785,265	+				-1.1
4,785,363	-				-0.9
4,785,368	+				-0.8
4,785,368	+				+0.5
4,785,368	+				-2.7
4,785,368	+				+0.0
4,785,368	+				+1.6
4,785,369	-				+0.3
4,785,372	+				-0.3
4,785,373	-				+2.8
4,785,385	+				+0.6
4,785,403	+		HER17_RS21355	0.13	-0.9
4,785,511	+		HER17_RS21355	0.33	-0.7
4,785,511	+		HER17_RS21355	0.33	+1.1
4,785,560	+		HER17_RS21355	0.42	-0.1
4,785,573	-		HER17_RS21355	0.45	-0.9
4,785,604	+		HER17_RS21355	0.50	-0.5
4,785,605	-		HER17_RS21355	0.51	-0.2
4,785,605	-		HER17_RS21355	0.51	-0.5
4,785,605	-		HER17_RS21355	0.51	+0.4
4,785,607	+		HER17_RS21355	0.51	-1.4
4,785,608	-		HER17_RS21355	0.51	-0.9
4,785,642	-		HER17_RS21355	0.58	-3.9
4,785,673	+		HER17_RS21355	0.63	-0.4
4,785,693	-		HER17_RS21355	0.67	+1.1
4,785,693	-		HER17_RS21355	0.67	-1.8
4,785,721	+		HER17_RS21355	0.73	+1.9
4,785,749	+		HER17_RS21355	0.78	-0.3
4,785,919	-				+0.1
4,785,920	+				-0.3
4,785,921	-				+0.3
4,785,922	+				+0.7
4,785,954	+				+1.0
4,786,055	+				+0.6
4,786,238	-				+0.6
4,786,247	-				-0.9