Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15640

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
3,511,055	-				+1.3
3,511,122	-				-0.2
3,511,122	-				-0.1
3,511,148	-				-0.6
3,511,225	+				-0.1
3,511,230	+		HER17_RS15635	0.10	+0.9
3,511,231	-		HER17_RS15635	0.10	+1.9
3,511,238	+		HER17_RS15635	0.12	+2.0
3,511,238	+		HER17_RS15635	0.12	-1.0
3,511,238	+		HER17_RS15635	0.12	-0.3
3,511,239	-		HER17_RS15635	0.12	-0.8
3,511,313	+		HER17_RS15635	0.28	+0.8
3,511,314	-		HER17_RS15635	0.28	+0.4
3,511,316	-		HER17_RS15635	0.28	-1.2
3,511,316	-		HER17_RS15635	0.28	-0.4
3,511,436	-		HER17_RS15635	0.53	+0.8
3,511,515	+		HER17_RS15635	0.70	+0.4
3,511,516	-		HER17_RS15635	0.70	-1.7
3,511,658	+				+0.3
3,511,658	+				-0.4
3,511,659	-				+1.5
3,511,659	-				+0.5
3,511,671	+				+1.5
3,511,682	-				-1.5
3,511,698	+				-2.8
3,511,699	-				-0.8
3,511,699	-				+0.3
3,511,699	-				+1.4
3,511,699	-				+3.4
3,511,699	-				-0.5
3,511,718	+				-3.7
3,511,719	-				-0.9
3,511,762	+				+0.4
3,511,762	+				+0.1
3,511,762	+				-2.9
3,511,762	+				+0.3
3,511,762	+				+0.2
3,511,763	-				-1.1
3,511,763	-				+1.2
3,511,764	+				+1.5
3,511,765	-				-0.5
3,511,765	-				-1.1
3,511,765	-				-0.9
3,511,773	+				-0.0
3,511,898	+				+0.6
3,511,899	-				+1.4
3,511,899	-				-0.8
3,511,906	+				-0.5
3,511,906	+				+0.2
3,512,023	+				+1.1
3,512,024	-				-1.2
3,512,027	+				+0.1
3,512,032	+				+0.0
3,512,033	-				+0.9
3,512,035	-				+1.2
3,512,134	+				-2.8
3,512,169	+				+1.1
3,512,170	-				+0.8
3,512,212	-		HER17_RS15640	0.12	-2.1
3,512,216	+		HER17_RS15640	0.13	+0.9
3,512,216	+		HER17_RS15640	0.13	+0.5
3,512,216	+		HER17_RS15640	0.13	+0.5
3,512,288	+		HER17_RS15640	0.18	+1.0
3,512,288	+		HER17_RS15640	0.18	-0.5
3,512,288	+		HER17_RS15640	0.18	-0.6
3,512,288	+		HER17_RS15640	0.18	+0.2
3,512,374	+		HER17_RS15640	0.24	+0.4
3,512,374	+		HER17_RS15640	0.24	+0.9
3,512,375	-		HER17_RS15640	0.24	-1.2
3,512,406	-		HER17_RS15640	0.26	-2.1
3,512,409	-		HER17_RS15640	0.27	-0.3
3,512,454	+		HER17_RS15640	0.30	-2.2
3,512,455	-		HER17_RS15640	0.30	+0.6
3,512,455	-		HER17_RS15640	0.30	-0.5
3,512,455	-		HER17_RS15640	0.30	-2.2
3,512,459	+		HER17_RS15640	0.30	-0.6
3,512,488	-		HER17_RS15640	0.32	-0.5
3,512,502	+		HER17_RS15640	0.33	-0.2
3,512,503	-		HER17_RS15640	0.33	+0.5
3,512,503	-		HER17_RS15640	0.33	-3.1
3,512,516	+		HER17_RS15640	0.34	+0.4
3,512,517	-		HER17_RS15640	0.34	-0.9
3,512,517	-		HER17_RS15640	0.34	-0.3
3,512,627	+		HER17_RS15640	0.42	-1.5
3,512,627	+		HER17_RS15640	0.42	+0.3
3,512,627	+		HER17_RS15640	0.42	+0.9
3,512,627	+		HER17_RS15640	0.42	+0.3
3,512,627	+		HER17_RS15640	0.42	+0.7
3,512,627	+		HER17_RS15640	0.42	-2.2
3,512,627	+		HER17_RS15640	0.42	+1.7
3,512,627	+		HER17_RS15640	0.42	+0.8
3,512,627	+		HER17_RS15640	0.42	+0.8
3,512,627	+		HER17_RS15640	0.42	+0.8
3,512,628	-		HER17_RS15640	0.42	-2.6
3,512,628	-		HER17_RS15640	0.42	-1.7
3,512,628	-		HER17_RS15640	0.42	+0.0
3,512,628	-		HER17_RS15640	0.42	+0.5
3,512,628	-		HER17_RS15640	0.42	-1.1
3,512,628	-		HER17_RS15640	0.42	-3.2
3,512,628	-		HER17_RS15640	0.42	-0.5
3,512,628	-		HER17_RS15640	0.42	+1.3
3,512,628	-		HER17_RS15640	0.42	-2.6
3,512,628	-		HER17_RS15640	0.42	-0.1
3,512,700	+		HER17_RS15640	0.48	+0.1
3,512,700	+		HER17_RS15640	0.48	+2.6
3,512,700	+		HER17_RS15640	0.48	-0.3
3,512,701	-		HER17_RS15640	0.48	-1.0
3,512,701	-		HER17_RS15640	0.48	-2.5
3,512,710	-		HER17_RS15640	0.48	-0.0
3,512,711	+		HER17_RS15640	0.48	-0.1
3,512,711	+		HER17_RS15640	0.48	-2.5
3,512,711	+		HER17_RS15640	0.48	+0.1
3,512,711	+		HER17_RS15640	0.48	+0.6
3,512,711	+		HER17_RS15640	0.48	-0.1
3,512,711	+		HER17_RS15640	0.48	+0.7
3,512,711	+		HER17_RS15640	0.48	-0.2
3,512,711	+		HER17_RS15640	0.48	+0.7
3,512,712	-		HER17_RS15640	0.49	+0.0
3,512,712	-		HER17_RS15640	0.49	+0.7
3,512,712	-		HER17_RS15640	0.49	-0.8
3,512,712	-		HER17_RS15640	0.49	+0.5
3,512,712	-		HER17_RS15640	0.49	+0.0
3,512,712	-		HER17_RS15640	0.49	-0.1
3,512,712	-		HER17_RS15640	0.49	+0.5
3,512,721	+		HER17_RS15640	0.49	+0.4
3,512,722	-		HER17_RS15640	0.49	-0.7
3,512,725	-		HER17_RS15640	0.49	-0.0
3,512,725	-		HER17_RS15640	0.49	-0.3
3,512,763	+		HER17_RS15640	0.52	+0.2
3,512,764	-		HER17_RS15640	0.52	+0.4
3,512,796	+		HER17_RS15640	0.55	-0.2
3,512,883	+		HER17_RS15640	0.61	-0.8
3,512,886	+		HER17_RS15640	0.61	+0.7
3,512,898	+		HER17_RS15640	0.62	-0.9
3,512,900	+		HER17_RS15640	0.62	+0.8
3,512,901	-		HER17_RS15640	0.62	+0.8
3,512,901	-		HER17_RS15640	0.62	+0.2
3,512,901	-		HER17_RS15640	0.62	+1.1
3,513,009	+		HER17_RS15640	0.70	+0.9
3,513,010	-		HER17_RS15640	0.70	+1.4
3,513,010	-		HER17_RS15640	0.70	-0.0
3,513,013	-		HER17_RS15640	0.70	+0.5
3,513,036	+		HER17_RS15640	0.72	-0.9
3,513,074	+		HER17_RS15640	0.75	-0.2
3,513,075	-		HER17_RS15640	0.75	-0.1
3,513,155	-		HER17_RS15640	0.81	-0.2
3,513,155	-		HER17_RS15640	0.81	-0.6
3,513,159	+		HER17_RS15640	0.81	-0.5
3,513,160	-		HER17_RS15640	0.81	+0.7
3,513,160	-		HER17_RS15640	0.81	+0.7
3,513,160	-		HER17_RS15640	0.81	+0.8
3,513,188	+		HER17_RS15640	0.83	+0.6
3,513,188	+		HER17_RS15640	0.83	+0.1
3,513,188	+		HER17_RS15640	0.83	+1.9
3,513,188	+		HER17_RS15640	0.83	-0.7
3,513,188	+		HER17_RS15640	0.83	-0.5
3,513,189	-		HER17_RS15640	0.83	-0.6
3,513,189	-		HER17_RS15640	0.83	-0.0
3,513,189	-		HER17_RS15640	0.83	+0.4
3,513,193	-		HER17_RS15640	0.83	-0.2
3,513,280	+		HER17_RS15640	0.90	-1.7
3,513,310	+				+1.1
3,513,398	-				+0.3
3,513,423	+				-0.2
3,513,423	+				+1.8
3,513,423	+				+0.5
3,513,423	+				+0.4
3,513,423	+				+0.6
3,513,423	+				+1.8
3,513,423	+				+0.6
3,513,424	-				-0.2
3,513,424	-				-2.6
3,513,424	-				-0.5
3,513,424	-				-0.7
3,513,424	-				-2.1
3,513,424	-				-0.1
3,513,424	-				+1.2
3,513,427	+				+1.4
3,513,428	-				+1.2
3,513,525	+				+0.9
3,513,579	+				-2.2
3,513,579	+				-2.1
3,513,583	+				-0.5
3,513,584	-				-0.2
3,513,606	-				+1.5
3,513,634	-				-1.3
3,513,681	+				+0.2
3,513,682	-				-3.3
3,513,811	+		HER17_RS15645	0.12	+1.0
3,513,811	+		HER17_RS15645	0.12	-0.2
3,513,811	+		HER17_RS15645	0.12	-1.7
3,513,811	+		HER17_RS15645	0.12	+0.2
3,513,812	-		HER17_RS15645	0.12	-1.0
3,513,812	-		HER17_RS15645	0.12	+0.5
3,513,812	-		HER17_RS15645	0.12	+0.3
3,513,876	-		HER17_RS15645	0.19	-2.2
3,513,878	-		HER17_RS15645	0.19	-0.3
3,513,961	+		HER17_RS15645	0.27	-0.6
3,513,962	-		HER17_RS15645	0.28	-0.6
3,513,984	-		HER17_RS15645	0.30	+0.1
3,514,061	+		HER17_RS15645	0.38	+0.3
3,514,095	+		HER17_RS15645	0.41	-0.1
3,514,096	-		HER17_RS15645	0.41	-0.1
3,514,096	-		HER17_RS15645	0.41	+0.5
3,514,096	-		HER17_RS15645	0.41	-0.2
3,514,096	-		HER17_RS15645	0.41	+1.4
3,514,103	-		HER17_RS15645	0.42	+0.3
3,514,251	+		HER17_RS15645	0.57	+0.4
3,514,251	+		HER17_RS15645	0.57	+1.0
3,514,251	+		HER17_RS15645	0.57	+1.1
3,514,271	+		HER17_RS15645	0.59	+0.1
3,514,302	-		HER17_RS15645	0.62	-1.3
3,514,388	+		HER17_RS15645	0.71	-3.1